Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Reverse (-)

14719935 .. 14724215

Gene Structure 4281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1046300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCGAATTTTGAATTCGAATACAAAATTTTCAATTGGTTCAAAGATTTCATGGCCAGGCTTAGCAATTTTGACGAGTTGGTGGCCACCGGAAGCACATTACTCGTCAACTTTCAGCAGGGGCTGGAGTTTCTTCGACGACCTCGGATAGATGAGACATCGGATTTGGTTAAAAACATAATCCGAGGTAATGAAACAAAGAAGGTTAAGTCATATGTTGAAGCTGGATGTCTCAACGCTGATGATGGCAGGCGAAATATAAGCAAGTTGCATACATGCCAACTTGGACTTTGTGACCATCTAAGTAAAGGCAGAAACGTACTTAATGAACTTGAATGCCTCCTGGAGGATGTAAATGGTGCAATGCGAACTGCAATGGGAAATTTACCCGACTTTCAGGGTGACAGTTTTGCGGACAGGTTGAATGAAGAAGCATGCAACGGTGACAAGGAGGAATTTACGTCATCCCATCCGAAAAGAAATGAAGTTATCGATTATGTTGTCGTGATGGGTGTCATTTACAGTATGGTCAAGCAAGACTATATGATGCAGGATTATGCTTGGAAACTTATTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

22.09

Weight (kDa)

5.06

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7795	PF25071	6 - 125	6.4e-53	Domain of unknown function (DUF7795)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	413
AcoI	YGGCCR	2 cut(s)	54, 84
AcsI	RAATTY	5 cut(s)	7, 14, 27, 382, 455
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	6 cut(s)	14, 34, 43, 221, 335, 424
AjnI	CCWGG	2 cut(s)	56, 342
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	149, 236
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	2 cut(s)	54, 84
ApoI	RAATTY	5 cut(s)	7, 14, 27, 382, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AsuHPI	GGTGA	2 cut(s)	413, 455
AsuII	TTCGAA	1 cut(s)	18
BalI	TGGCCA	2 cut(s)	56, 86
BccI	CCATC	4 cut(s)	239, 306, 477, 502
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	2 cut(s)	58, 344
BcoDI	GTCTC	2 cut(s)	149, 236
BlpI	GCTNAGC	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	58, 344
BmrFI	CCNGG	2 cut(s)	58, 344
BmsI	GCATC	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	146, 365
Bpu1102I	GCTNAGC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	18
Bsa29I	ATCGAT	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	143, 184
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse3DI	GCAATG	2 cut(s)	369, 381
BseBI	CCWGG	2 cut(s)	58, 344
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	143, 184
BseGI	GGATG	4 cut(s)	233, 355, 464, 469
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	2 cut(s)	369, 381
BshFI	GGCC	2 cut(s)	56, 86
BshVI	ATCGAT	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	149, 236
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	56, 86
Bsp119I	TTCGAA	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	2 cut(s)	56, 86
BspDI	ATCGAT	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	18
BsrDI	GCAATG	2 cut(s)	369, 381
BssECI	CCNNGG	2 cut(s)	143, 184
Bst2UI	CCWGG	2 cut(s)	58, 344
Bst4CI	ACNGT	3 cut(s)	407, 443, 524
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	251, 436
BstDEI	CTNAG	2 cut(s)	62, 302
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	4 cut(s)	233, 355, 464, 469
BstMAI	GTCTC	2 cut(s)	149, 236
BstNI	CCWGG	2 cut(s)	58, 344
BstNSI	RCATGY	2 cut(s)	279, 438
BstSCI	CCNGG	2 cut(s)	56, 342
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	56, 86
BsuTUI	ATCGAT	1 cut(s)	492
BtsCI	GGATG	4 cut(s)	233, 355, 464, 469
Cac8I	GCNNGC	2 cut(s)	251, 436
CaiI	CAGNNNCTG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	3 cut(s)	52, 276, 435
CviJI	RGCY	5 cut(s)	56, 61, 86, 124, 224
CviKI_1	RGCY	5 cut(s)	56, 61, 86, 124, 224
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	2 cut(s)	62, 302
EaeI	YGGCCR	2 cut(s)	54, 84
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	56, 342
FaeI	CATG	3 cut(s)	55, 279, 438
FatI	CATG	3 cut(s)	51, 275, 434
FauNDI	CATATG	1 cut(s)	214
FokI	GGATG	4 cut(s)	240, 362, 451, 456
GsuI	CTGGAG	2 cut(s)	146, 365
HaeIII	GGCC	2 cut(s)	56, 86
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	3 cut(s)	55, 279, 438
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	413, 455
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	147, 163, 185, 474
Hpy188III	TCNNGA	1 cut(s)	505
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	3 cut(s)	407, 443, 524
HpyCH4IV	ACGT	2 cut(s)	318, 461
HpyCH4V	TGCA	5 cut(s)	271, 362, 374, 438, 550
HpyF3I	CTNAG	2 cut(s)	62, 302
HpySE526I	ACGT	2 cut(s)	318, 461
Hsp92II	CATG	3 cut(s)	55, 279, 438
LweI	GCATC	1 cut(s)	537
MaeII	ACGT	2 cut(s)	318, 461
MaeIII	GTNAC	3 cut(s)	293, 401, 443
MboII	GAAGA	2 cut(s)	125, 440
MfeI	CAATTG	1 cut(s)	34
MlsI	TGGCCA	2 cut(s)	56, 86
MluCI	AATT	7 cut(s)	7, 14, 27, 34, 67, 382, 455
MluNI	TGGCCA	2 cut(s)	56, 86
MnlI	CCTC	5 cut(s)	153, 179, 340, 350, 445
Mox20I	TGGCCA	2 cut(s)	56, 86
MscI	TGGCCA	2 cut(s)	56, 86
MseI	TTAA	3 cut(s)	171, 207, 324
Msp20I	TGGCCA	2 cut(s)	56, 86
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	58, 344
MunI	CAATTG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	2 cut(s)	58, 344
NdeI	CATATG	1 cut(s)	214
NlaIII	CATG	3 cut(s)	55, 279, 438
NmuCI	GTSAC	3 cut(s)	293, 401, 443
NspI	RCATGY	2 cut(s)	279, 438
NspV	TTCGAA	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	56, 342
PspGI	CCWGG	2 cut(s)	56, 342
PstNI	CAGNNNCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	171, 207, 324
ScrFI	CCNGG	2 cut(s)	58, 344
SetI	ASST	7 cut(s)	145, 190, 207, 226, 321, 422, 464
SfaNI	GCATC	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	18
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	7 cut(s)	7, 14, 27, 34, 67, 382, 455
SsiI	CCGC	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	56, 342
TaaI	ACNGT	3 cut(s)	407, 443, 524
TaiI	ACGT	2 cut(s)	321, 464
TaqI	TCGA	4 cut(s)	5, 18, 136, 492
TasI	AATT	7 cut(s)	7, 14, 27, 34, 67, 382, 455
Tru1I	TTAA	3 cut(s)	171, 207, 324
Tru9I	TTAA	3 cut(s)	171, 207, 324
TseFI	GTSAC	3 cut(s)	293, 401, 443
Tsp45I	GTSAC	3 cut(s)	293, 401, 443
TspDTI	ATGAA	5 cut(s)	40, 207, 342, 441, 498
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	5 cut(s)	7, 14, 27, 382, 455
XceI	RCATGY	2 cut(s)	279, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.