Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

11147147 .. 11147995

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0084000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGATCCTACTTATCTAAATGTGTTCAACCTTGTAGAAGACGTAGAGAAGGGAACTGCATATATCTCTTTTAATACATACAACAGCTCCCCTGTCACAAATCTGGTGATTTCACCTGAAGGCGTTTTAAAGCAAATGCGTAAGAGAGAAGGCAAAGATTGGTATGTAGCTTGGGAGGCTCCTAATAGGTTTGTGCCAAAGTCAGAGGAGGAGTGGCGCAAAGAAATCTGGACTGGAGGGTGCGTGAGGCGAACTAACTTATCTTCATGTGGTAAGTCATTGAGAGGGAAAAGCGATGGATTTTGGAAGATGGATGGTATCAAACTTTCAGATTTTTATGAATTTGTGCAGCTTGGTCAGAATGCTGACAATTGCCGCATATGGTGCTTGAATAACTGTTCTTGCTTGGCATATGCACATGTAATTGGAATAGGATGTTTGGTCTGGTCCAAAAGCCTTGTTGACATCCAACAGTTCTCCTTTGGTGGACAACAACTTTTCCTCCGTCTCGCAAATTCAGAACTAGTTGGTGATAACAAGACACGAAAAACCATCTACAGTGTTGTAGCTGTTTCTGTCGTTACCATCTCTGGAACCATCTTAGTTTTCATTTTCCATGAGCGCAGAGCTGATGAAAGGGGTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

216

Amino Acids

24.57

Weight (kDa)

8.8

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	96 - 156	1.2e-15	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	341, 514
AcuI	CTGAAG	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	28, 391
AhlI	ACTAGT	1 cut(s)	523
AluBI	AGCT	5 cut(s)	87, 170, 352, 569, 629
AluI	AGCT	5 cut(s)	87, 170, 352, 569, 629
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	2 cut(s)	341, 514
AspLEI	GCGC	2 cut(s)	219, 624
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	105, 118, 542
AvaII	GGWCC	1 cut(s)	447
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	6 cut(s)	290, 304, 308, 560, 593, 605
BcoDI	GTCTC	1 cut(s)	512
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	556
BisI	GCNGC	2 cut(s)	350, 376
BlsI	GCNGC	2 cut(s)	351, 377
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	3 cut(s)	6, 180, 595
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 228, 258, 486, 516
Bse1I	ACTGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	319, 440, 465
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	221, 224
BseXI	GCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	512
BsmBI	CGTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	6, 180, 595
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	3 cut(s)	398, 474, 560
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	601
BstF5I	GGATG	3 cut(s)	319, 440, 465
BstHHI	GCGC	2 cut(s)	219, 624
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 384
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	556
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	319, 440, 465
BtsIMutI	CAGTG	1 cut(s)	565
CfoI	GCGC	2 cut(s)	219, 624
Cfr13I	GGNCC	1 cut(s)	447
CviAII	CATG	3 cut(s)	267, 419, 617
CviJI	RGCY	7 cut(s)	87, 170, 179, 352, 456, 569, 629
CviKI_1	RGCY	7 cut(s)	87, 170, 179, 352, 456, 569, 629
DdeI	CTNAG	1 cut(s)	601
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	3 cut(s)	270, 422, 620
FatI	CATG	3 cut(s)	266, 418, 616
FauNDI	CATATG	2 cut(s)	380, 412
Fnu4HI	GCNGC	2 cut(s)	350, 376
FokI	GGATG	3 cut(s)	326, 447, 452
Fsp4HI	GCNGC	2 cut(s)	350, 376
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	2 cut(s)	218, 623
GluI	GCNGC	2 cut(s)	350, 376
GsuI	CTGGAG	1 cut(s)	255
HhaI	GCGC	2 cut(s)	219, 624
Hin1II	CATG	3 cut(s)	270, 422, 620
Hin6I	GCGC	2 cut(s)	217, 622
HinP1I	GCGC	2 cut(s)	217, 622
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HphI	GGTGA	3 cut(s)	105, 118, 542
Hpy166II	GTNNAC	2 cut(s)	463, 488
Hpy188I	TCNGA	4 cut(s)	205, 331, 360, 520
Hpy188III	TCNNGA	2 cut(s)	229, 591
Hpy8I	GTNNAC	2 cut(s)	463, 488
HpyAV	CCTTC	3 cut(s)	43, 113, 143
HpyCH4III	ACNGT	3 cut(s)	398, 474, 560
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	59, 349, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 384
HpyF3I	CTNAG	1 cut(s)	601
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	270, 422, 620
HspAI	GCGC	2 cut(s)	217, 622
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	92, 184
LpnPI	CCDG	7 cut(s)	89, 105, 129, 214, 219, 430, 576
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	94, 580
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	50, 255, 319
MfeI	CAATTG	1 cut(s)	370
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	341, 370, 423, 514
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	7 cut(s)	169, 199, 202, 230, 240, 278, 512
MseI	TTAA	2 cut(s)	72, 128
MunI	CAATTG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	176, 384
NdeI	CATATG	2 cut(s)	380, 412
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	270, 422, 620
NlaIV	GGNNCC	3 cut(s)	6, 180, 595
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	422
PciI	ACATGT	1 cut(s)	418
PctI	GAATGC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	351, 377
PscI	ACATGT	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	6, 180, 595
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	72, 128
SatI	GCNGC	2 cut(s)	350, 376
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	447
SetI	ASST	9 cut(s)	33, 45, 89, 118, 172, 191, 354, 571, 631
SfcI	CTRYAG	1 cut(s)	556
SinI	GGWCC	1 cut(s)	447
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	4 cut(s)	341, 370, 423, 514
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	524
TaaI	ACNGT	3 cut(s)	398, 474, 560
TaiI	ACGT	1 cut(s)	45
TasI	AATT	4 cut(s)	341, 370, 423, 514
TauI	GCSGC	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	72, 128
Tru9I	TTAA	2 cut(s)	72, 128
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	4 cut(s)	255, 354, 598, 648
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	2 cut(s)	341, 514
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.