Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Reverse (-)

21949625 .. 21952927

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G211100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTCTCCTTCTCTGCTTCTTCAGTTCTTCAATTTATTCTTCGGTTCCATGTAGGTCTCTACTTCTTCCTTCTTCGCTTGTTCTTATTTTTCCAGTTCTTCGCTATGTTGAATTCTGAAATAGAAGACCAAGTTTTCAACTTGTTCAAGGATTTCATGGCCAGGGTGGCCAAGTTTGATGATTTAGTGAATCTGGGAAGCATATTACTCACTGGCTTTCAGCAGGGGCTGGAGTTTCTTAGGCGGCCTCCGGTAGAGAAGACATCTGAGTTGGTTAAAAACATAATCCGAGCTAATGAAACACAGAGAGTTAAGTCATATATTGAAGCTGGATGCATCAACAGTGACGATGGCGTGCAAAATACAAACAAGTTGCATGCATGCCAACTTGGACTCCGTGACCATTTAAGCAAAGGCAAAAGCGTACTTAATGAACTTGAATGCCTCGTGGAGGATGTAAATGGTGCAATGGAAAATTTGTCCCCTTTCCAGGACGACAGTTTTGCTGACAGGCTGAATGAAGAAGCAAGTACTGATGACAAGGAGGAAATTGCTTCATCCCGTCCCAAAAGAAATGAAGTTACCGATTATGCTGAGTGTATGGGGATCATTTACAGTATGGTCAAGCAAGACTACATGATGCAGGAAAGGGTTGTTTCTGCTCTGAATGCTAAGTCATCTTCAGGAGAGTTAGAGAGCTACTGCCTGATGTGGTCTTTGCGTCCCTTCATAAATAGCGAAGTTATGGATCATGCTTGGAAACTTATTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.47

Weight (kDa)

4.91

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	614, 756
AcoI	YGGCCR	2 cut(s)	159, 168
AcsI	RAATTY	2 cut(s)	112, 475
AcuI	CTGAAG	2 cut(s)	6, 666
AfaI	GTAC	2 cut(s)	426, 532
AfiI	CCNNNNNNNGG	2 cut(s)	451, 490
AgsI	TTSAA	6 cut(s)	32, 112, 139, 148, 326, 440
AjnI	CCWGG	2 cut(s)	161, 489
AluBI	AGCT	3 cut(s)	293, 329, 699
AluI	AGCT	3 cut(s)	293, 329, 699
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	614, 756
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	3 cut(s)	159, 168, 245
ApoI	RAATTY	2 cut(s)	112, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
BalI	TGGCCA	2 cut(s)	161, 170
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	132, 266
BccI	CCATC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciT130I	CCWGG	2 cut(s)	163, 491
BcoDI	GTCTC	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	2 cut(s)	163, 491
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	163, 491
BmsI	GCATC	3 cut(s)	323, 345, 630
BpiI	GAAGAC	2 cut(s)	132, 266
BpmI	CTGGAG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 490
Bse1I	ACTGG	2 cut(s)	94, 217
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	163, 491
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	338, 460, 557
BseLI	CCNNNNNNNGG	2 cut(s)	451, 490
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	258, 585
BseNI	ACTGG	2 cut(s)	94, 217
BshFI	GGCC	3 cut(s)	161, 170, 247
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	3 cut(s)	466, 549, 708
BslI	CCNNNNNNNGG	2 cut(s)	451, 490
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	3 cut(s)	466, 549, 708
BsmI	GAATGC	2 cut(s)	446, 673
BsnI	GGCC	3 cut(s)	161, 170, 247
Bso31I	GGTCTC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	606, 748
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	3 cut(s)	161, 170, 247
BspCNI	CTCAG	2 cut(s)	259, 586
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	614, 756
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	94, 217
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	606, 748
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	2 cut(s)	163, 491
Bst4CI	ACNGT	3 cut(s)	344, 500, 617
BstC8I	GCNNGC	3 cut(s)	356, 378, 382
BstDEI	CTNAG	4 cut(s)	239, 267, 594, 672
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	338, 460, 557
BstKTI	GATC	2 cut(s)	609, 751
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	606, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 668
BstNI	CCWGG	2 cut(s)	163, 491
BstNSI	RCATGY	2 cut(s)	380, 384
BstSCI	CCNGG	2 cut(s)	161, 489
BstV2I	GAAGAC	2 cut(s)	132, 266
BsuRI	GGCC	3 cut(s)	161, 170, 247
BtsCI	GGATG	3 cut(s)	338, 460, 557
BtsIMutI	CAGTG	2 cut(s)	210, 349
Cac8I	GCNNGC	3 cut(s)	356, 378, 382
CaiI	CAGNNNCTG	1 cut(s)	229
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	2 cut(s)	425, 531
CviAII	CATG	6 cut(s)	50, 157, 377, 381, 637, 752
CviJI	RGCY	9 cut(s)	161, 170, 216, 229, 247, 293, 329, 514, 699
CviKI_1	RGCY	9 cut(s)	161, 170, 216, 229, 247, 293, 329, 514, 699
CviQI	GTAC	2 cut(s)	425, 531
DdeI	CTNAG	4 cut(s)	239, 267, 594, 672
DpnI	GATC	2 cut(s)	608, 750
DpnII	GATC	2 cut(s)	606, 748
EaeI	YGGCCR	2 cut(s)	159, 168
Eco31I	GGTCTC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	6, 666
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	161, 489
EcoT22I	ATGCAT	2 cut(s)	338, 382
FaeI	CATG	6 cut(s)	53, 160, 380, 384, 640, 755
FaqI	GGGAC	3 cut(s)	466, 549, 708
FatI	CATG	6 cut(s)	49, 156, 376, 380, 636, 751
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	3 cut(s)	345, 467, 544
Fsp4HI	GCNGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	161, 170, 247
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	710
Hin1II	CATG	6 cut(s)	53, 160, 380, 384, 640, 755
HinfI	GANTC	2 cut(s)	190, 393
HpaII	CCGG	1 cut(s)	251
Hpy188I	TCNGA	4 cut(s)	118, 268, 290, 666
Hpy188III	TCNNGA	1 cut(s)	684
HpyAV	CCTTC	3 cut(s)	19, 80, 736
HpyCH4III	ACNGT	3 cut(s)	344, 500, 617
HpyCH4V	TGCA	6 cut(s)	336, 358, 376, 380, 467, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 668
HpyF3I	CTNAG	4 cut(s)	239, 267, 594, 672
Hsp92II	CATG	6 cut(s)	53, 160, 380, 384, 640, 755
Kzo9I	GATC	2 cut(s)	606, 748
LweI	GCATC	3 cut(s)	323, 345, 630
MaeIII	GTNAC	3 cut(s)	344, 398, 580
MalI	GATC	2 cut(s)	608, 750
MboI	GATC	2 cut(s)	606, 748
MlsI	TGGCCA	2 cut(s)	161, 170
MluCI	AATT	4 cut(s)	32, 112, 475, 549
MluNI	TGGCCA	2 cut(s)	161, 170
MlyI	GAGTC	1 cut(s)	387
MnlI	CCTC	4 cut(s)	258, 445, 455, 538
Mox20I	TGGCCA	2 cut(s)	161, 170
Mph1103I	ATGCAT	2 cut(s)	338, 382
MscI	TGGCCA	2 cut(s)	161, 170
MseI	TTAA	4 cut(s)	276, 312, 407, 429
Msp20I	TGGCCA	2 cut(s)	161, 170
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	163, 491
Mva1269I	GAATGC	2 cut(s)	446, 673
MvaI	CCWGG	2 cut(s)	163, 491
MwoI	GCNNNNNNNGC	2 cut(s)	167, 668
NdeII	GATC	2 cut(s)	606, 748
NlaIII	CATG	6 cut(s)	53, 160, 380, 384, 640, 755
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	344, 398
NsiI	ATGCAT	2 cut(s)	338, 382
NspI	RCATGY	2 cut(s)	380, 384
PaeI	GCATGC	2 cut(s)	380, 384
PctI	GAATGC	2 cut(s)	446, 673
PfeI	GAWTC	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	161, 489
PspGI	CCWGG	2 cut(s)	161, 489
PspN4I	GGNNCC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	229
RsaI	GTAC	2 cut(s)	426, 532
RsaNI	GTAC	2 cut(s)	425, 531
SaqAI	TTAA	4 cut(s)	276, 312, 407, 429
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	606, 748
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	2 cut(s)	163, 491
SetI	ASST	4 cut(s)	58, 295, 331, 701
SfaNI	GCATC	3 cut(s)	323, 345, 630
SfiI	GGCCNNNNNGGCC	1 cut(s)	167
SphI	GCATGC	2 cut(s)	380, 384
Sse9I	AATT	4 cut(s)	32, 112, 475, 549
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	2 cut(s)	161, 489
TaaI	ACNGT	3 cut(s)	344, 500, 617
TasI	AATT	4 cut(s)	32, 112, 475, 549
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	4 cut(s)	276, 312, 407, 429
Tru9I	TTAA	4 cut(s)	276, 312, 407, 429
TscAI	CASTG	2 cut(s)	217, 349
TseFI	GTSAC	2 cut(s)	344, 398
Tsp45I	GTSAC	2 cut(s)	344, 398
TspDTI	ATGAA	7 cut(s)	145, 312, 447, 534, 546, 591, 718
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	217, 349
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	2 cut(s)	112, 475
XceI	RCATGY	2 cut(s)	380, 384
ZrmI	AGTACT	1 cut(s)	532
Zsp2I	ATGCAT	2 cut(s)	338, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.