Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

58514002 .. 58514388

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030259

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGGAAATCATCTTTGCCTCCTAGTTTTCGGTTTAATTCTACTGACGTTGAGCTGGTACAATATTATTTGAAGAGGAAGGTAATGCGGAAAAGACTCCATGTTCAAGTTATTGCTGAGGTGGATATTTACAAGTCGGCTCCTTGGGATCTTCCGGACAAATCTTGTTGGAGAAGTGGATATTTGAGATGGTACTTCTTTTCTCCTAGAGAGAGAAAATATGCACGTGGAGCTAGAATGAATCGTGCCACCGACTGTGGGTACTGGAAGACCTCGGGAAAGGATAGGTCTGTTGTTTACGATAGTGAAGTTGTCGGGTGGATAAGAACATTGATTTTTCACACAGGTCGAGCTCCACAATTAGAACGGACTAATTGGGTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

129

Amino Acids

15.25

Weight (kDa)

10.05

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 127	2.2e-37	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	227
AfaI	GTAC	3 cut(s)	60, 194, 263
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	73, 107
AluBI	AGCT	3 cut(s)	55, 233, 353
AluI	AGCT	3 cut(s)	55, 233, 353
Alw21I	GWGCWC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	274
Aor13HI	TCCGGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	183
BfaI	CTAG	3 cut(s)	24, 207, 234
BmeT110I	CYCGRG	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	143, 273
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	269
BseAI	TCCGGA	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	143, 273
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	143, 273
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	59, 193, 262
CviAII	CATG	2 cut(s)	101, 384
CviJI	RGCY	4 cut(s)	55, 140, 233, 353
CviKI_1	RGCY	4 cut(s)	55, 140, 233, 353
CviQI	GTAC	3 cut(s)	59, 193, 262
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	353
Eco72I	CACGTG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	2 cut(s)	104, 387
FaiI	YATR	3 cut(s)	102, 222, 385
FatI	CATG	2 cut(s)	100, 383
FriOI	GRGCYC	1 cut(s)	355
FspBI	CTAG	3 cut(s)	24, 207, 234
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	2 cut(s)	104, 387
HinfI	GANTC	2 cut(s)	96, 241
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	155, 276
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	48, 226
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	2 cut(s)	48, 226
Hsp92II	CATG	2 cut(s)	104, 387
Kpn2I	TCCGGA	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	3 cut(s)	145, 230, 358
LpnPI	CCDG	4 cut(s)	41, 168, 250, 330
MaeI	CTAG	3 cut(s)	24, 207, 234
MaeII	ACGT	2 cut(s)	48, 226
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	3 cut(s)	85, 143, 280
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	3 cut(s)	37, 359, 373
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	30, 69, 112, 283
MroI	TCCGGA	1 cut(s)	154
MseI	TTAA	1 cut(s)	36
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	104, 387
NlaIV	GGNNCC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	227
PmlI	CACGTG	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	355
PspCI	CACGTG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	3 cut(s)	60, 194, 263
RsaNI	GTAC	3 cut(s)	59, 193, 262
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	355
Sse9I	AATT	3 cut(s)	37, 359, 373
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	3 cut(s)	24, 207, 234
SstI	GAGCTC	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	51, 229
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	37, 359, 373
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	382
XspI	CTAG	3 cut(s)	24, 207, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.