Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

11631812 .. 11635211

Gene Structure 3400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGGAAATCATCTTTGCCTCCTGGGTTTCGGTTTAATCCTACTGATGTTGAGTTGGTACAATACTATTTGAAGAGGAAGATAATGGGAAAGAAACTCCATGTTAAGGTTGTTGCTGAGGTGGACATATACAAATGGGCTCCTTGGGATCTTCCAGACAAATCTTGTTGGCGAAGTGGAGATTTGAAATGGTACTTCTTTTGTCCTAGAGAGAAGAAATATGCAAGCGGAGGTAGAGTGAATCGTGCAACTGACTGTGGTTACTGGAAGACCACGGGGAAGGATAGATCTGTTCTTTACAATAGTGAAGTTGTTGGGTGGATAAAAACATTAATTTTTCACGGTGGTCGAGCTCCACGAGGAGAGCGCACAAACTGGGTTTTACATGAGTATAGGCTTGAAGATAAGAACCTGGCTGAGAAGGGTGTCGCTCAGGATTCTCATGTGCTCTGTTTAATTTTCCAAAAGGATGGGATAGGACCAAAAAGTTCTAAACAATATGGTGCACCTTTCAAAGAAGAAGACTGGACTGATGATGAGGTTGAAACAGACATTTCACATGTAAACATTTCTGAGACCAACCTTGTTCATACAAACATGCTTGAGCCAGAGCCAAATCTTACTCATTCATATACCCCTGAGCCAGACATTGTTCAGGCAAACATGCATGATCAAGTGCTTGTTAATACAAACATCACTGAGCCCCATCTTGTTTATGGAAACATGCCCGACCCATACGTTGTTTATCCAAATATGCCTCAGTCAGACTTTTCTTATGCAAACATGTCTGAGCCATACCTTGCCCTTCCCAGCAACCATAATAGTTCTATTACTCGCACCAATTCCCATGAGTCATGTGTTTCTGATATCTTGCCACCTTCTGGCAATGTCCTCCAGTCTGTGTGTAGTAATTATGAAACAACAGATCATGTTTCACCTGATGAAGATATCTTGTCGATGCTTAATTGCTTTACAGAAGACGGAACTTTCTCCATGGATCACATTGACAAAAATGAGTGTCTGACTTTTTTCATGGGTTTACAGAAGCTGGAGACTCTCATTTATTCTGGAGATGCTAATCCTATAGCTGGTGTCGGAAAACATGATGATACTAATAAAGATCTGGGAGGATTGAGCAAAGATGGATATATTTTCCCCAATGGAGCTATTTCTGGAGCTTCAAGTGAGAATGAGCCATATCTGGAGCTATTTGATCTCGATATTGAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

411

Amino Acids

46.36

Weight (kDa)

4.96

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	3.3e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	881
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	156, 1005
AfaI	GTAC	2 cut(s)	60, 194
AfiI	CCNNNNNNNGG	3 cut(s)	106, 881, 1088
AflIII	ACRYGT	2 cut(s)	559, 783
AgsI	TTSAA	7 cut(s)	73, 187, 401, 514, 545, 1182, 1226
AjnI	CCWGG	2 cut(s)	22, 411
AluBI	AGCT	6 cut(s)	353, 1048, 1088, 1166, 1178, 1207
AluI	AGCT	6 cut(s)	353, 1048, 1088, 1166, 1178, 1207
Alw21I	GWGCWC	3 cut(s)	355, 450, 508
Alw26I	GTCTC	2 cut(s)	569, 1046
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	156, 1005
AlwNI	CAGNNNCTG	1 cut(s)	1048
ApaLI	GTGCAC	1 cut(s)	504
AseI	ATTAAT	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	927
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	3 cut(s)	142, 355, 705
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	3 cut(s)	275, 528, 984
Bbv12I	GWGCWC	3 cut(s)	355, 450, 508
BbvCI	CCTCAGC	1 cut(s)	117
BccI	CCATC	3 cut(s)	464, 714, 1136
BciT130I	CCWGG	2 cut(s)	24, 413
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	2 cut(s)	569, 1046
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	1083
BglII	AGATCT	2 cut(s)	287, 1120
Bme1390I	CCNGG	2 cut(s)	24, 413
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	24, 413
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	948, 1063
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	3 cut(s)	275, 528, 984
BpmI	CTGGAG	5 cut(s)	878, 1070, 1089, 1194, 1223
Bpu10I	CCTNAGC	3 cut(s)	117, 432, 639
BpuEI	CTTGAG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	1077
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	4 cut(s)	23, 143, 273, 993
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 881, 1088
Bse1I	ACTGG	4 cut(s)	269, 380, 530, 895
Bse3DI	GCAATG	1 cut(s)	892
Bse8I	GATNNNNATC	1 cut(s)	1077
BseBI	CCWGG	2 cut(s)	24, 413
BseDI	CCNNGG	4 cut(s)	23, 143, 273, 993
BseGI	GGATG	1 cut(s)	475
BseJI	GATNNNNATC	1 cut(s)	1077
BseLI	CCNNNNNNNGG	3 cut(s)	106, 881, 1088
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	8 cut(s)	108, 408, 446, 564, 630, 690, 773, 780
BseNI	ACTGG	4 cut(s)	269, 380, 530, 895
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	809
BsiHKAI	GWGCWC	3 cut(s)	355, 450, 508
BslI	CCNNNNNNNGG	3 cut(s)	106, 881, 1088
BsmAI	GTCTC	2 cut(s)	569, 1046
Bso31I	GGTCTC	1 cut(s)	569
Bsp1286I	GDGCHC	5 cut(s)	142, 355, 450, 508, 705
Bsp143I	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
Bsp19I	CCATGG	1 cut(s)	993
BspACI	CCGC	1 cut(s)	228
BspCNI	CTCAG	8 cut(s)	109, 409, 445, 565, 631, 691, 772, 781
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	156, 1005
BspTNI	GGTCTC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	892
BsrI	ACTGG	4 cut(s)	269, 380, 530, 895
BssECI	CCNNGG	4 cut(s)	23, 143, 273, 993
BssMI	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	143, 993
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	24, 413
Bst4CI	ACNGT	2 cut(s)	257, 344
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	8 cut(s)	117, 417, 432, 573, 639, 699, 759, 789
BstDSI	CCRYGG	2 cut(s)	273, 993
BstF5I	GGATG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	7 cut(s)	151, 290, 673, 928, 1000, 1123, 1216
BstMAI	GTCTC	2 cut(s)	569, 1046
BstMBI	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
BstNI	CCWGG	2 cut(s)	24, 413
BstNSI	RCATGY	5 cut(s)	563, 601, 667, 727, 787
BstSCI	CCNGG	2 cut(s)	22, 411
BstSFI	CTRYAG	1 cut(s)	1083
BstSLI	GKGCMC	1 cut(s)	508
BstV2I	GAAGAC	3 cut(s)	275, 528, 984
BstX2I	RGATCY	3 cut(s)	148, 287, 1120
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	3 cut(s)	148, 287, 1120
BtgI	CCRYGG	2 cut(s)	273, 993
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	1048
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	59, 193
CviQI	GTAC	2 cut(s)	59, 193
DdeI	CTNAG	8 cut(s)	117, 417, 432, 573, 639, 699, 759, 789
DpnI	GATC	7 cut(s)	150, 289, 672, 927, 999, 1122, 1215
DpnII	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	143, 993
Eco24I	GRGCYC	3 cut(s)	142, 355, 705
Eco31I	GGTCTC	1 cut(s)	569
Eco32I	GATATC	2 cut(s)	868, 949
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	22, 411
EcoRV	GATATC	2 cut(s)	868, 949
EcoT14I	CCWWGG	2 cut(s)	143, 993
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	3 cut(s)	142, 355, 705
ErhI	CCWWGG	2 cut(s)	143, 993
FbaI	TGATCA	1 cut(s)	670
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	3 cut(s)	142, 355, 705
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	368
GsaI	CCCAGC	1 cut(s)	813
GsuI	CTGGAG	5 cut(s)	878, 1070, 1089, 1194, 1223
HhaI	GCGC	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	4 cut(s)	241, 437, 851, 1054
HphI	GGTGA	1 cut(s)	927
Hpy166II	GTNNAC	4 cut(s)	124, 506, 565, 1040
Hpy188I	TCNGA	6 cut(s)	574, 766, 790, 865, 1023, 1097
Hpy188III	TCNNGA	6 cut(s)	155, 434, 1068, 1173, 1202, 1217
Hpy8I	GTNNAC	4 cut(s)	124, 506, 565, 1040
HpyAV	CCTTC	4 cut(s)	274, 415, 815, 888
HpyCH4III	ACNGT	2 cut(s)	257, 344
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	5 cut(s)	224, 248, 506, 667, 779
HpyF3I	CTNAG	8 cut(s)	117, 417, 432, 573, 639, 699, 759, 789
HpySE526I	ACGT	1 cut(s)	738
HspAI	GCGC	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
LmnI	GCTCC	5 cut(s)	145, 358, 1163, 1175, 1204
LweI	GCATC	2 cut(s)	948, 1063
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	7 cut(s)	150, 289, 672, 927, 999, 1122, 1215
MboI	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
MflI	RGATCY	3 cut(s)	148, 287, 1120
MhlI	GDGCHC	5 cut(s)	142, 355, 450, 508, 705
MluCI	AATT	5 cut(s)	333, 456, 841, 910, 964
MlyI	GAGTC	2 cut(s)	860, 1048
MmeI	TCCRAC	1 cut(s)	1075
MnlI	CCTC	9 cut(s)	30, 69, 112, 224, 353, 532, 768, 902, 1121
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	6 cut(s)	36, 105, 332, 455, 684, 963
MspR9I	CCNGG	2 cut(s)	24, 413
MvaI	CCWGG	2 cut(s)	24, 413
NcoI	CCATGG	1 cut(s)	993
NdeII	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
NlaIV	GGNNCC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	5 cut(s)	563, 601, 667, 727, 787
PciI	ACATGT	2 cut(s)	559, 783
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	241, 437
PflMI	CCANNNNNTGG	1 cut(s)	881
PleI	GAGTC	2 cut(s)	859, 1048
PpsI	GAGTC	2 cut(s)	859, 1048
PscI	ACATGT	2 cut(s)	559, 783
PshBI	ATTAAT	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	22, 411
PspFI	CCCAGC	1 cut(s)	809
PspGI	CCWGG	2 cut(s)	22, 411
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	1048
PsuI	RGATCY	3 cut(s)	148, 287, 1120
RsaI	GTAC	2 cut(s)	60, 194
RsaNI	GTAC	2 cut(s)	59, 193
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	6 cut(s)	36, 105, 332, 455, 684, 963
Sau3AI	GATC	7 cut(s)	148, 287, 670, 925, 997, 1120, 1213
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	860, 1048
ScrFI	CCNGG	2 cut(s)	24, 413
SduI	GDGCHC	5 cut(s)	142, 355, 450, 508, 705
SfaNI	GCATC	2 cut(s)	948, 1063
SfcI	CTRYAG	1 cut(s)	1083
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	5 cut(s)	333, 456, 841, 910, 964
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	22, 411
StyI	CCWWGG	2 cut(s)	143, 993
TaaI	ACNGT	2 cut(s)	257, 344
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	3 cut(s)	349, 956, 1218
TasI	AATT	5 cut(s)	333, 456, 841, 910, 964
TfiI	GAWTC	2 cut(s)	241, 437
Tru1I	TTAA	6 cut(s)	36, 105, 332, 455, 684, 963
Tru9I	TTAA	6 cut(s)	36, 105, 332, 455, 684, 963
TscAI	CASTG	1 cut(s)	703
TspDTI	ATGAA	5 cut(s)	578, 618, 930, 957, 1021
TspGWI	ACGGA	1 cut(s)	996
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	1 cut(s)	881
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	332
XceI	RCATGY	5 cut(s)	563, 601, 667, 727, 787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.