Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

20859836 .. 20861119

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGGGAAATCATCTTTGCCTCCCGGTTTTCGGTTTAATCCAACTGATGTTGAGCTGGTACAATATTATTTGAAGAGGAAGGTAATGGGGAAAAGACTCCATGTTCAAGTTATTGCTGAGGTGGATATTTACAAGTCGGCTCCTTGGGATCTTCCGGACAAATCTTGTTGGAGAAGTGGAGATTTGAAATGGTACTTCTTTTCTCCTAGAGAGAAAAAATATGCACGCGGAGCTAGAATGAATCGTGCCACCGACTGTGGGTACTGGAAGACCTCGGGAAAGGATAGGTCTGTTGTTTACGATAGTGAAGTTGTCGGGTGGATAAAAACATTGATTTTTCACACAGGTCGAGCACCACAAGGAGAACGGACTAATTGGGTTTTACATGAGTATAGGCTTGAAGACAAGAACCTGGTTGATATGGGTGTGCCTCAGGATTCTTATGTGCTCTGTATGGTTTTCCAGAAGGATGGGATCGGACCGAGAAGTAATAAACAATATGGTGCACCCTTCAAAGAGGAAGACTGGACTGATGATGAGGTTGAAACTGATGTAGTTCCATATGTAAACATGTCTGAGCCAAACCTTGTTCATGCAAACATGCATGAGCCAGAGCCAGACCTTGTTCAAGCAATGTTACCTGATCAAGTACTTGTTAATTCAAACATCACTGAGCCCGATCATGTTTATGGAAATGTGCCCGACCCATACCTTGTTTATCCAAACATGCCTCAATCAGACCTTGGTTGTGCAAACATGCCTGAGCCATACCTGGTCTTGCCCAGCAACTATAATAGTTCTATTGCTACTCGAACCAATTCCCATGTGTCTTGCGTTTCTGATATCTTGCCACCTTCAAGCAATGTTCTCCAGTCTGTTTCCAGTAATTATGTTACAACAGAGAAACCTCATGTCGCAACCGATGATGATATCATGTCGATGCTTAATTGCTTTACAGAAGAAGGAACTTTCTCCATGGGTGACATTGACAAAAATGAGGAGCTTGATAATTTCATTTATTCTGGAGATGCTAATCCTATAGCTGTTCTCGAAATACGTGATACTTATGAAGATCTGGGAGGTTTGAGCAAAGATGCATATAATATCCCCAGTGGAGCTATTTCTGGAGCTCCAGGTGAGAATGAGCCATATCTGGAGCTAGTTGATCTTGACAAACATTTGAATGACAATAATTCTCTGTTTCCAATGATTAGTCCATCTCGTTCTTTTATTGGAGAGAAACCTTATGAAGATTTGTTCTTTTCATGGAGAGATGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

428

Amino Acids

48.37

Weight (kDa)

4.62

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	2.3e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	156, 482
AfaI	GTAC	4 cut(s)	60, 194, 263, 651
AfiI	CCNNNNNNNGG	2 cut(s)	30, 258
AflIII	ACRYGT	1 cut(s)	570
AjnI	CCWGG	3 cut(s)	411, 771, 1132
AluBI	AGCT	7 cut(s)	55, 233, 1003, 1043, 1118, 1130, 1159
AluI	AGCT	7 cut(s)	55, 233, 1003, 1043, 1118, 1130, 1159
Alw21I	GWGCWC	4 cut(s)	355, 450, 508, 1132
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	156, 482
Ama87I	CYCGRG	1 cut(s)	274
Aor13HI	TCCGGA	1 cut(s)	154
ApaLI	GTGCAC	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	992, 1148
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	2 cut(s)	508, 702
BanII	GRGCYC	2 cut(s)	678, 1132
BbsI	GAAGAC	3 cut(s)	275, 408, 528
Bbv12I	GWGCWC	4 cut(s)	355, 450, 508, 1132
BbvCI	CCTCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	464, 1225
BciT130I	CCWGG	3 cut(s)	413, 773, 1134
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	3 cut(s)	207, 234, 1160
BfmI	CTRYAG	1 cut(s)	1038
BglII	AGATCT	1 cut(s)	1072
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	4 cut(s)	24, 413, 773, 1134
Bme18I	GGWCC	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	4 cut(s)	24, 413, 773, 1134
BmrI	ACTGGG	1 cut(s)	1104
BmsI	GCATC	3 cut(s)	930, 1018, 1084
BmuI	ACTGGG	1 cut(s)	1104
BpiI	GAAGAC	3 cut(s)	275, 408, 528
BpmI	CTGGAG	5 cut(s)	854, 1044, 1116, 1146, 1175
Bpu10I	CCTNAGC	2 cut(s)	117, 762
BpuMI	CCSGG	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	1032
BsaJI	CCNNGG	4 cut(s)	143, 273, 742, 975
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 258
Bse1I	ACTGG	5 cut(s)	269, 530, 871, 882, 1110
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	2 cut(s)	639, 868
Bse8I	GATNNNNATC	1 cut(s)	1032
BseAI	TCCGGA	1 cut(s)	154
BseBI	CCWGG	3 cut(s)	413, 773, 1134
BseDI	CCNNGG	4 cut(s)	143, 273, 742, 975
BseGI	GGATG	1 cut(s)	475
BseJI	GATNNNNATC	1 cut(s)	1032
BseLI	CCNNNNNNNGG	2 cut(s)	30, 258
BseMI	GCAATG	2 cut(s)	639, 868
BseMII	CTCAG	5 cut(s)	108, 446, 567, 663, 753
BseNI	ACTGG	5 cut(s)	269, 530, 871, 882, 1110
BseRI	GAGGAG	1 cut(s)	1013
BseSI	GKGCMC	2 cut(s)	508, 702
BseYI	CCCAGC	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	228
BsiHKAI	GWGCWC	4 cut(s)	355, 450, 508, 1132
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	24, 155
BslI	CCNNNNNNNGG	2 cut(s)	30, 258
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	6 cut(s)	355, 450, 508, 678, 702, 1132
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
Bsp19I	CCATGG	1 cut(s)	975
BspACI	CCGC	1 cut(s)	228
BspCNI	CTCAG	5 cut(s)	109, 445, 568, 664, 754
BspEI	TCCGGA	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	156, 482
BsrDI	GCAATG	2 cut(s)	639, 868
BsrI	ACTGG	5 cut(s)	269, 530, 871, 882, 1110
BssECI	CCNNGG	4 cut(s)	143, 273, 742, 975
BssMI	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
BssT1I	CCWWGG	3 cut(s)	143, 742, 975
Bst2UI	CCWGG	3 cut(s)	413, 773, 1134
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	1058
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	5 cut(s)	117, 432, 576, 672, 762
BstDSI	CCRYGG	1 cut(s)	975
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	6 cut(s)	151, 477, 646, 682, 1075, 1168
BstMBI	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	3 cut(s)	413, 773, 1134
BstNSI	RCATGY	4 cut(s)	574, 604, 730, 760
BstSCI	CCNGG	4 cut(s)	22, 411, 771, 1132
BstSFI	CTRYAG	1 cut(s)	1038
BstSLI	GKGCMC	2 cut(s)	508, 702
BstUI	CGCG	1 cut(s)	228
BstV2I	GAAGAC	3 cut(s)	275, 408, 528
BstX2I	RGATCY	2 cut(s)	148, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	148, 1072
Bsu36I	CCTNAGG	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	975
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	2 cut(s)	669, 1117
Cac8I	GCNNGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	479
CpoI	CGGWCCG	1 cut(s)	479
CsiI	ACCWGGT	2 cut(s)	411, 771
Csp6I	GTAC	4 cut(s)	59, 193, 262, 650
CspI	CGGWCCG	1 cut(s)	479
CviQI	GTAC	4 cut(s)	59, 193, 262, 650
DdeI	CTNAG	5 cut(s)	117, 432, 576, 672, 762
DpnI	GATC	6 cut(s)	150, 476, 645, 681, 1074, 1167
DpnII	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	1130
Eco130I	CCWWGG	3 cut(s)	143, 742, 975
Eco24I	GRGCYC	2 cut(s)	678, 1132
Eco32I	GATATC	2 cut(s)	844, 931
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	1130
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	1130
EcoRII	CCWGG	3 cut(s)	411, 771, 1132
EcoRV	GATATC	2 cut(s)	844, 931
EcoT14I	CCWWGG	3 cut(s)	143, 742, 975
EcoT22I	ATGCAT	2 cut(s)	606, 1099
EcoT38I	GRGCYC	2 cut(s)	678, 1132
ErhI	CCWWGG	3 cut(s)	143, 742, 975
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	643
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	2 cut(s)	678, 1132
FspBI	CTAG	3 cut(s)	207, 234, 1160
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	5 cut(s)	854, 1044, 1116, 1146, 1175
HapII	CCGG	2 cut(s)	24, 155
HinfI	GANTC	3 cut(s)	96, 241, 437
HpaII	CCGG	2 cut(s)	24, 155
HphI	GGTGA	2 cut(s)	992, 1148
Hpy166II	GTNNAC	3 cut(s)	298, 506, 568
Hpy188I	TCNGA	4 cut(s)	479, 577, 739, 841
Hpy188III	TCNNGA	9 cut(s)	155, 276, 434, 463, 1023, 1049, 1125, 1154, 1169
Hpy8I	GTNNAC	3 cut(s)	298, 506, 568
HpyAV	CCTTC	5 cut(s)	73, 460, 520, 864, 956
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	1057
HpyCH4V	TGCA	6 cut(s)	224, 506, 596, 604, 752, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	5 cut(s)	117, 432, 576, 672, 762
HpySE526I	ACGT	1 cut(s)	1057
Kpn2I	TCCGGA	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
LmnI	GCTCC	7 cut(s)	145, 230, 1000, 1115, 1127, 1135, 1156
LweI	GCATC	3 cut(s)	930, 1018, 1084
MabI	ACCWGGT	2 cut(s)	411, 771
MaeI	CTAG	3 cut(s)	207, 234, 1160
MaeII	ACGT	1 cut(s)	1057
MaeIII	GTNAC	3 cut(s)	636, 892, 980
MalI	GATC	6 cut(s)	150, 476, 645, 681, 1074, 1167
MboI	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
MboII	GAAGA	8 cut(s)	85, 143, 280, 413, 533, 971, 1082, 1262
MflI	RGATCY	2 cut(s)	148, 1072
MhlI	GDGCHC	6 cut(s)	355, 450, 508, 678, 702, 1132
MluCI	AATT	7 cut(s)	373, 658, 817, 886, 946, 1009, 1192
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	65, 149
Mph1103I	ATGCAT	2 cut(s)	606, 1099
MroI	TCCGGA	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	817
MseI	TTAA	3 cut(s)	36, 657, 945
MslI	CAYNNNNRTG	3 cut(s)	687, 938, 1182
MspI	CCGG	2 cut(s)	24, 155
MspR9I	CCNGG	4 cut(s)	24, 413, 773, 1134
MvaI	CCWGG	3 cut(s)	413, 773, 1134
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	975
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	980
NsiI	ATGCAT	2 cut(s)	606, 1099
NspI	RCATGY	4 cut(s)	574, 604, 730, 760
PciI	ACATGT	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	2 cut(s)	241, 437
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	1058
PscI	ACATGT	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	1132
Psp6I	CCWGG	3 cut(s)	411, 771, 1132
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	3 cut(s)	411, 771, 1132
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	148, 1072
RsaI	GTAC	4 cut(s)	60, 194, 263, 651
RsaNI	GTAC	4 cut(s)	59, 193, 262, 650
RseI	CAYNNNNRTG	3 cut(s)	687, 938, 1182
Rsr2I	CGGWCCG	1 cut(s)	479
RsrII	CGGWCCG	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	1132
SaqAI	TTAA	3 cut(s)	36, 657, 945
Sau3AI	GATC	6 cut(s)	148, 474, 643, 679, 1072, 1165
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	651
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	4 cut(s)	24, 413, 773, 1134
SduI	GDGCHC	6 cut(s)	355, 450, 508, 678, 702, 1132
SexAI	ACCWGGT	2 cut(s)	411, 771
SfaNI	GCATC	3 cut(s)	930, 1018, 1084
SfcI	CTRYAG	1 cut(s)	1038
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	3 cut(s)	687, 938, 1182
Sse9I	AATT	7 cut(s)	373, 658, 817, 886, 946, 1009, 1192
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	3 cut(s)	207, 234, 1160
SstI	GAGCTC	1 cut(s)	1132
StyD4I	CCNGG	4 cut(s)	22, 411, 771, 1132
StyI	CCWWGG	3 cut(s)	143, 742, 975
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	1060
TaqI	TCGA	4 cut(s)	349, 811, 938, 1050
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	7 cut(s)	373, 658, 817, 886, 946, 1009, 1192
TatI	WGTACW	1 cut(s)	649
TfiI	GAWTC	2 cut(s)	241, 437
Tru1I	TTAA	3 cut(s)	36, 657, 945
Tru9I	TTAA	3 cut(s)	36, 657, 945
TscAI	CASTG	2 cut(s)	676, 1117
TseFI	GTSAC	1 cut(s)	980
Tsp45I	GTSAC	1 cut(s)	980
TspDTI	ATGAA	6 cut(s)	254, 581, 1003, 1083, 1254, 1263
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	2 cut(s)	676, 1117
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	479
XceI	RCATGY	4 cut(s)	574, 604, 730, 760
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	3 cut(s)	207, 234, 1160
ZrmI	AGTACT	1 cut(s)	651
Zsp2I	ATGCAT	2 cut(s)	606, 1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.