Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001938.1

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

42 .. 1599

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001938.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgggtgtgcctcaggattcttatgtgctctgtatggttttccaaaaggatgggataggaccaagaagtaataaacaatatggtgcacccttcaaagaggaagattggactgatgatgaggttgaaactgatgtagttccacatgtaaccatgtctgagccaaaccttgttcatgcaaacattcatcagccagagccacatcttattcattcaaacatgcctgagcctgaccttgttcaagcaaacatacctgatcaagtacctgttaattcaaacatcactgagcccgatcttgtttatggaaacatgcccttcccataccttgtttgtccaaacatgcctgaatcagaccttgattatgcaaacatgcctcaatcagaccttgattatgcaaacatgcctcaatcagaccttggttatgcaaacatgtctgagccatcccttgtcttgcccagcaactataatagctctattgctactcgcaccaattcccgtgcgtcttgtgtttctgatatcttgccaccttctagcaatgttctgcagtctgtttccagtaattatgttacaacagagaaacctcatgtttcaactgatgatgatatcatgtcgatgcttaattgctttacagaagaaggaactttctccatgagtgacattgacaaaaatgagcagcttgataatctcatttattctggggacgctaatcctatagctgattttgaaagacatgatgatgctcatgaagatcggggaggattgagcaaaaatggatataatatccccaatggagctacgtctggagctccaggtgagaatgagccatatctggagctagttgatcttgacaaacctttgaatggcaataattccctgtttccaatgattagtccacctcatacttttcttggagagacaccttatgaagactcgttgttccatggagtgatgacttatgaagactggatgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

323

Amino Acids

35.79

Weight (kDa)

4.08

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	857
AflIII	ACRYGT	2 cut(s)	142, 426
AgsI	TTSAA	8 cut(s)	94, 125, 213, 239, 273, 588, 722, 856
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	6 cut(s)	468, 673, 713, 791, 803, 832
AluI	AGCT	6 cut(s)	468, 673, 713, 791, 803, 832
Alw21I	GWGCWC	3 cut(s)	30, 88, 805
Alw26I	GTCTC	1 cut(s)	905
Alw44I	GTGCAC	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	12
BaeGI	GKGCMC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	288, 805
BbsI	GAAGAC	2 cut(s)	930, 963
Bbv12I	GWGCWC	3 cut(s)	30, 88, 805
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	2 cut(s)	44, 445
BciT130I	CCWGG	1 cut(s)	807
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	905
BfaI	CTAG	2 cut(s)	528, 833
BfmI	CTRYAG	2 cut(s)	539, 708
BisI	GCNGC	1 cut(s)	671
BlsI	GCNGC	1 cut(s)	672
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	2 cut(s)	600, 724
BpiI	GAAGAC	2 cut(s)	930, 963
BpmI	CTGGAG	3 cut(s)	789, 819, 848
Bpu10I	CCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	412, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	857
Bse1I	ACTGG	2 cut(s)	552, 965
Bse21I	CCTNAGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	412, 937
BseGI	GGATG	3 cut(s)	55, 437, 969
BseLI	CCNNNNNNNGG	1 cut(s)	857
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	5 cut(s)	26, 147, 213, 273, 423
BseNI	ACTGG	2 cut(s)	552, 965
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	682
BseYI	CCCAGC	1 cut(s)	452
BsiHKAI	GWGCWC	3 cut(s)	30, 88, 805
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	1 cut(s)	857
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	710
Bsp1286I	GDGCHC	4 cut(s)	30, 88, 288, 805
Bsp143I	GATC	4 cut(s)	253, 289, 745, 838
Bsp19I	CCATGG	1 cut(s)	937
BspCNI	CTCAG	5 cut(s)	25, 148, 214, 274, 424
BspHI	TCATGA	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	552, 965
BssECI	CCNNGG	2 cut(s)	412, 937
BssMI	GATC	4 cut(s)	253, 289, 745, 838
BssT1I	CCWWGG	2 cut(s)	412, 937
Bst2UI	CCWGG	1 cut(s)	807
BstDEI	CTNAG	5 cut(s)	12, 156, 222, 282, 432
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	3 cut(s)	55, 437, 969
BstKTI	GATC	4 cut(s)	256, 292, 748, 841
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	4 cut(s)	253, 289, 745, 838
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	7 cut(s)	146, 220, 310, 340, 370, 400, 430
BstSCI	CCNGG	1 cut(s)	805
BstSFI	CTRYAG	2 cut(s)	539, 708
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	2 cut(s)	930, 963
BstXI	CCANNNNNNTGG	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	937
BtsCI	GGATG	3 cut(s)	55, 437, 969
BtsIMutI	CAGTG	1 cut(s)	279
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	59
CseI	GACGC	2 cut(s)	486, 707
Csp6I	GTAC	1 cut(s)	260
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	5 cut(s)	12, 156, 222, 282, 432
DpnI	GATC	4 cut(s)	255, 291, 747, 840
DpnII	GATC	4 cut(s)	253, 289, 745, 838
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	2 cut(s)	412, 937
Eco24I	GRGCYC	2 cut(s)	288, 805
Eco32I	GATATC	2 cut(s)	514, 601
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	803
Eco81I	CCTNAGG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	803
EcoRII	CCWGG	1 cut(s)	805
EcoRV	GATATC	2 cut(s)	514, 601
EcoT14I	CCWWGG	2 cut(s)	412, 937
EcoT38I	GRGCYC	2 cut(s)	288, 805
ErhI	CCWWGG	2 cut(s)	412, 937
FaqI	GGGAC	1 cut(s)	710
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	671
FokI	GGATG	2 cut(s)	62, 424
FriOI	GRGCYC	2 cut(s)	288, 805
Fsp4HI	GCNGC	1 cut(s)	671
FspBI	CTAG	2 cut(s)	528, 833
GluI	GCNGC	1 cut(s)	671
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	3 cut(s)	789, 819, 848
HgaI	GACGC	2 cut(s)	486, 707
HinfI	GANTC	3 cut(s)	17, 344, 926
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	2 cut(s)	86, 890
Hpy188I	TCNGA	6 cut(s)	157, 349, 379, 409, 433, 511
Hpy188III	TCNNGA	5 cut(s)	14, 740, 798, 827, 842
Hpy8I	GTNNAC	2 cut(s)	86, 890
HpyAV	CCTTC	4 cut(s)	100, 322, 534, 626
HpyCH4IV	ACGT	1 cut(s)	794
HpyCH4V	TGCA	6 cut(s)	86, 176, 362, 392, 422, 541
HpyF3I	CTNAG	5 cut(s)	12, 156, 222, 282, 432
HpySE526I	ACGT	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	253, 289, 745, 838
LmnI	GCTCC	4 cut(s)	788, 800, 808, 829
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	2 cut(s)	600, 724
MaeI	CTAG	2 cut(s)	528, 833
MaeII	ACGT	1 cut(s)	794
MaeIII	GTNAC	3 cut(s)	145, 562, 650
MalI	GATC	4 cut(s)	255, 291, 747, 840
MboI	GATC	4 cut(s)	253, 289, 745, 838
MboII	GAAGA	5 cut(s)	113, 641, 755, 935, 968
MhlI	GDGCHC	4 cut(s)	30, 88, 288, 805
MluCI	AATT	5 cut(s)	268, 487, 556, 616, 865
MlyI	GAGTC	1 cut(s)	920
MnlI	CCTC	8 cut(s)	21, 91, 112, 381, 411, 588, 746, 903
MseI	TTAA	2 cut(s)	267, 615
MslI	CAYNNNNRTG	2 cut(s)	608, 732
MspR9I	CCNGG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	807
NcoI	CCATGG	1 cut(s)	937
NdeII	GATC	4 cut(s)	253, 289, 745, 838
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	7 cut(s)	146, 220, 310, 340, 370, 400, 430
PagI	TCATGA	1 cut(s)	739
PciI	ACATGT	2 cut(s)	142, 426
PfeI	GAWTC	2 cut(s)	17, 344
PkrI	GCNGC	1 cut(s)	672
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
PscI	ACATGT	2 cut(s)	142, 426
Psp124BI	GAGCTC	1 cut(s)	805
Psp6I	CCWGG	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	805
PspPI	GGNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	543
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	608, 732
SacI	GAGCTC	1 cut(s)	805
SaqAI	TTAA	2 cut(s)	267, 615
SatI	GCNGC	1 cut(s)	671
Sau3AI	GATC	4 cut(s)	253, 289, 745, 838
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	4 cut(s)	30, 88, 288, 805
SfaNI	GCATC	2 cut(s)	600, 724
SfcI	CTRYAG	2 cut(s)	539, 708
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	608, 732
Sse9I	AATT	5 cut(s)	268, 487, 556, 616, 865
SspMI	CTAG	2 cut(s)	528, 833
SstI	GAGCTC	1 cut(s)	805
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	2 cut(s)	412, 937
TaiI	ACGT	1 cut(s)	797
TaqI	TCGA	1 cut(s)	608
TasI	AATT	5 cut(s)	268, 487, 556, 616, 865
TfiI	GAWTC	2 cut(s)	17, 344
Tru1I	TTAA	2 cut(s)	267, 615
Tru9I	TTAA	2 cut(s)	267, 615
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	6 cut(s)	161, 173, 197, 756, 936, 969
TspRI	CASTG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	59
XceI	RCATGY	7 cut(s)	146, 220, 310, 340, 370, 400, 430
XspI	CTAG	2 cut(s)	528, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.