Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

58566776 .. 58570919

Gene Structure 4144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATATAATATCTCCAATGGAGCTAATTCTGGAGTTCCAGATGTCGAATTCTGAATTAGATGACAAGATTTTCAGCTTGTTCAAGGATTTTATGGCCGGTTTGAGGAATTGGTGCATGGGAAGCACATTTCTCAATGGCTTTCAGCATGCACTGGGTAGTTCTGATATGTTCCTGAACATTGTTTGGTCCTTTTTCCCCTTTGACTTTGGCAAAATGCAATCATGCCAACTTGGACTTCATGACCATATATGTAAAGGAAAAGGTATACTTAACGAACTGGAATGCCTACTGGAAGATGTAAGTGGTGCAATGCAAGATAAATCCTTGTTCCAGGATGACAATTTGGGTGAAAGGTTGAATGAACAAGCATGTATCAATGACAAGGAGGAAATTGCCCCGCCTTGTCCCAGAAGAAATGAAGTTACTGATTATGTTGTCCTGATGGCAGTCATTTATCGTATGGAAAGAATTGTTTCTGCGTTAAGTCTCAAGTCATCTTCCGGAGAATTAGAGAGCTACTGCCTTATGTGGTCTTTGCGTCCTTACATAGATGAAGAAATTATAGGTCATGCTTGGAAACTTATACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.59

Weight (kDa)

4.64

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7795	PF25071	72 - 107	4e-09	Domain of unknown function (DUF7795)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	503
AciI	CCGC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	85, 361
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	3 cut(s)	25, 78, 519
AluI	AGCT	3 cut(s)	25, 78, 519
Alw26I	GTCTC	1 cut(s)	494
Aor13HI	TCCGGA	1 cut(s)	503
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	189
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	159, 285, 297
Bse3DI	GCAATG	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	3 cut(s)	159, 285, 297
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	99, 504
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	98
Bsp13I	TCCGGA	1 cut(s)	503
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	98
BspEI	TCCGGA	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	159, 285, 297
BssAI	RCCGGY	1 cut(s)	98
BssNAI	GTATAC	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	2 cut(s)	152, 375
BstSCI	CCNGG	1 cut(s)	333
BstZ17I	GTATAC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	2 cut(s)	152, 589
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	530
CviAII	CATG	6 cut(s)	118, 149, 225, 242, 372, 572
CviJI	RGCY	5 cut(s)	25, 78, 98, 141, 519
CviKI_1	RGCY	5 cut(s)	25, 78, 98, 141, 519
EaeI	YGGCCR	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	6 cut(s)	121, 152, 228, 245, 375, 575
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	6 cut(s)	117, 148, 224, 241, 371, 571
FauI	CCCGC	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	268
FokI	GGATG	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	99, 504
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	6 cut(s)	121, 152, 228, 245, 375, 575
HpaII	CCGG	2 cut(s)	99, 504
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	55, 166
Hpy188III	TCNNGA	6 cut(s)	32, 40, 175, 242, 442, 504
Hpy8I	GTNNAC	1 cut(s)	269
HpyCH4V	TGCA	5 cut(s)	117, 152, 220, 311, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
Hsp92II	CATG	6 cut(s)	121, 152, 228, 245, 375, 575
Kpn2I	TCCGGA	1 cut(s)	503
LmnI	GCTCC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	424
MboII	GAAGA	4 cut(s)	308, 426, 492, 569
MluCI	AATT	9 cut(s)	27, 49, 56, 109, 343, 393, 471, 509, 561
MnlI	CCTC	2 cut(s)	99, 382
MroI	TCCGGA	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	475
MseI	TTAA	2 cut(s)	273, 485
MspI	CCGG	2 cut(s)	99, 504
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	123
NlaIII	CATG	6 cut(s)	121, 152, 228, 245, 375, 575
NspI	RCATGY	2 cut(s)	152, 375
PaeI	GCATGC	1 cut(s)	152
PagI	TCATGA	1 cut(s)	241
PctI	GAATGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	273, 485
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	6 cut(s)	27, 80, 268, 359, 521, 571
SinI	GGWCC	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	9 cut(s)	27, 49, 56, 109, 343, 393, 471, 509, 561
SsiI	CCGC	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	333
TaqI	TCGA	1 cut(s)	47
TasI	AATT	9 cut(s)	27, 49, 56, 109, 343, 393, 471, 509, 561
Tru1I	TTAA	2 cut(s)	273, 485
Tru9I	TTAA	2 cut(s)	273, 485
TscAI	CASTG	1 cut(s)	159
TspDTI	ATGAA	4 cut(s)	230, 378, 435, 570
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	2 cut(s)	152, 375
XmiI	GTMKAC	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.