Rorug06G0083900
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
11128623 .. 11131432
2810 bp
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UTR
Exon/CDS
Intron
Rorug06G0083900.1

Sequence Viewer

Length: 264 bp
ATGTCTAGATCTGAATCAGATGGTGCTGGTTTGGTTGCCAAGATGAGCAGAGGCACCCTCTTCTCTCATCTGTTTATCAGTATTGTGAAGGTTATTGATCTTCAAGAAGTTTTTGATGAGGAGGAGGTGATTGTGCCTGAGCTTAATCAGAAAGATGATTCAAGTTATGTTGCAGTGGAGATATGTGGGCTGCTATTGATGGTGTATCAAAGGCTTCTCAAGGTTATGATTGAAGATATTGGGAAGCAGATTAAGCAACTATAA

Protein Analysis

87

Amino Acids

9.8

Weight (kDa)

4.7

Isoelectric Point (pI)

64.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AgsI TTSAA 3 cut(s) 104, 162, 233
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 14, 193
BfaI CTAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 8
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 55
BplI GAGNNNNNCTC 2 cut(s) 42, 74
Bpu10I CCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 13
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 134, 137
BseXI GCAGC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 8, 97
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 53
BssMI GATC 2 cut(s) 8, 97
Bst6I CTCTTC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 138
BstKTI GATC 2 cut(s) 11, 100
BstMBI GATC 2 cut(s) 8, 97
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
CviJI RGCY 3 cut(s) 142, 190, 214
CviKI_1 RGCY 3 cut(s) 142, 190, 214
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 10, 99
DpnII GATC 2 cut(s) 8, 97
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
FaiI YATR 4 cut(s) 168, 184, 227, 262
Fnu4HI GCNGC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 14, 158
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 13, 19, 150
Hpy188III TCNNGA 2 cut(s) 6, 104
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 138
Kzo9I GATC 2 cut(s) 8, 97
LpnPI CCDG 2 cut(s) 12, 150
Lsp1109I GCAGC 1 cut(s) 177
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 10, 99
MboI GATC 2 cut(s) 8, 97
MboII GAAGA 3 cut(s) 52, 92, 245
MflI RGATCY 1 cut(s) 8
MnlI CCTC 5 cut(s) 44, 68, 112, 115, 118
MseI TTAA 2 cut(s) 144, 252
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 2 cut(s) 8, 97
NlaIV GGNNCC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 14, 158
PkrI GCNGC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 8
SaqAI TTAA 2 cut(s) 144, 252
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 8, 97
SetI ASST 4 cut(s) 93, 129, 144, 225
SgeI CNNG 7 cut(s) 18, 39, 52, 116, 149, 174, 232
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SspMI CTAG 1 cut(s) 6
TfiI GAWTC 2 cut(s) 14, 158
Tru1I TTAA 2 cut(s) 144, 252
Tru9I TTAA 2 cut(s) 144, 252
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 190
TspRI CASTG 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.