Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Reverse (-)

58511289 .. 58511923

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCGGAAAAGACTCCATGTTCAAGTTATTGCTAAGGTGGATATTTACAAGTCAGCTCCTTGGGATCTTCCGAACAAATCTTGTTGGAGAAGTGGATATTTGAGATGGTACTTCTTTTCTCCTAGAGAGAGAAAATATGCACGCGGAGCTAGAATGAATCGTGCCACCGACTGTGAGTACTGGAAGACCTCGGGAAAGGATAGGATTCTTGTGCTCTGTATGGTTTTCCAAAAGGATGGGATAGGACCGAGAAGTAATAAACAATATGGTGCACCCTTCAAAGAGGAAGACTGGACTGATGATGTGGTTGAAACTGATGTAGTTCCATATGTAGACATGTTTGAGCCAAACCTTGTTCATGCAAACATGCAAGAGCCAGAGCCAAACCTTGTTCAAGAAAACATACATGATCAAGTACTTGTTAATTCAAACATCACTGGGCCCGATCTTGTTTATGGAAATGTGCCCAACCCATACCTTGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

163

Amino Acids

18.99

Weight (kDa)

6.82

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	3 - 70	4.9e-17	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	4, 144
AclWI	GGATC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	110, 179, 417
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	5 cut(s)	23, 280, 311, 395, 429
AluBI	AGCT	2 cut(s)	56, 149
AluI	AGCT	2 cut(s)	56, 149
Alw21I	GWGCWC	2 cut(s)	216, 274
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	440
ApaI	GGGCCC	1 cut(s)	444
ApaLI	GTGCAC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	245, 440, 441
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	3 cut(s)	274, 444, 468
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	2 cut(s)	191, 294
Bbv12I	GWGCWC	2 cut(s)	216, 274
BccI	CCATC	2 cut(s)	99, 230
BclI	TGATCA	1 cut(s)	409
BfaI	CTAG	2 cut(s)	123, 150
BmcAI	AGTACT	2 cut(s)	179, 417
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	245, 440, 441
BmiI	GGNNCC	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	2 cut(s)	191, 294
Bpu10I	CCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	59, 189
Bse1I	ACTGG	3 cut(s)	185, 296, 442
BseDI	CCNNGG	2 cut(s)	59, 189
BseGI	GGATG	1 cut(s)	241
BseNI	ACTGG	3 cut(s)	185, 296, 442
BseSI	GKGCMC	3 cut(s)	274, 444, 468
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	216, 274
BsiHKCI	CYCGRG	1 cut(s)	190
BsnI	GGCC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	190
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	4 cut(s)	216, 274, 444, 468
Bsp143I	GATC	3 cut(s)	64, 409, 445
BspACI	CCGC	2 cut(s)	4, 144
BspANI	GGCC	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	72
BsrI	ACTGG	3 cut(s)	185, 296, 442
BssECI	CCNNGG	2 cut(s)	59, 189
BssMI	GATC	3 cut(s)	64, 409, 445
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	67, 412, 448
BstMBI	GATC	3 cut(s)	64, 409, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	2 cut(s)	340, 370
BstSLI	GKGCMC	3 cut(s)	274, 444, 468
BstUI	CGCG	1 cut(s)	144
BstV2I	GAAGAC	2 cut(s)	191, 294
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	142
Cfr13I	GGNCC	3 cut(s)	245, 440, 441
Csp6I	GTAC	3 cut(s)	109, 178, 416
CviAII	CATG	5 cut(s)	17, 337, 359, 367, 407
CviJI	RGCY	6 cut(s)	56, 149, 346, 376, 382, 442
CviKI_1	RGCY	6 cut(s)	56, 149, 346, 376, 382, 442
CviQI	GTAC	3 cut(s)	109, 178, 416
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	3 cut(s)	66, 411, 447
DpnII	GATC	3 cut(s)	64, 409, 445
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	5 cut(s)	20, 340, 362, 370, 410
FatI	CATG	5 cut(s)	16, 336, 358, 366, 406
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	444
FspBI	CTAG	2 cut(s)	123, 150
HaeIII	GGCC	1 cut(s)	442
Hin1II	CATG	5 cut(s)	20, 340, 362, 370, 410
HinfI	GANTC	3 cut(s)	12, 157, 205
Hpy166II	GTNNAC	2 cut(s)	272, 334
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	192, 395
Hpy8I	GTNNAC	2 cut(s)	272, 334
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	140, 272, 362, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	20, 340, 362, 370, 410
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	64, 409, 445
LmnI	GCTCC	2 cut(s)	61, 146
LpnPI	CCDG	4 cut(s)	166, 277, 390, 423
MaeI	CTAG	2 cut(s)	123, 150
MalI	GATC	3 cut(s)	66, 411, 447
MboI	GATC	3 cut(s)	64, 409, 445
MboII	GAAGA	3 cut(s)	59, 196, 299
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	4 cut(s)	216, 274, 444, 468
MluCI	AATT	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	199, 277
MseI	TTAA	2 cut(s)	423, 487
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	3 cut(s)	64, 409, 445
NlaIII	CATG	5 cut(s)	20, 340, 362, 370, 410
NlaIV	GGNNCC	1 cut(s)	442
NspI	RCATGY	2 cut(s)	340, 370
PciI	ACATGT	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	157, 205
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
PscI	ACATGT	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	442
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	3 cut(s)	245, 440, 441
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	3 cut(s)	110, 179, 417
RsaNI	GTAC	3 cut(s)	109, 178, 416
SaqAI	TTAA	2 cut(s)	423, 487
Sau3AI	GATC	3 cut(s)	64, 409, 445
Sau96I	GGNCC	3 cut(s)	245, 440, 441
ScaI	AGTACT	2 cut(s)	179, 417
SchI	GAGTC	1 cut(s)	6
SduI	GDGCHC	4 cut(s)	216, 274, 444, 468
SetI	ASST	7 cut(s)	39, 58, 151, 191, 354, 390, 480
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	2 cut(s)	4, 144
SspMI	CTAG	2 cut(s)	123, 150
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	173
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	424
TatI	WGTACW	2 cut(s)	177, 415
TfiI	GAWTC	2 cut(s)	157, 205
Tru1I	TTAA	2 cut(s)	423, 487
Tru9I	TTAA	2 cut(s)	423, 487
TscAI	CASTG	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	170, 347
TspRI	CASTG	1 cut(s)	442
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	2 cut(s)	340, 370
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	123, 150
ZrmI	AGTACT	2 cut(s)	179, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.