Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001304

Physical Location & Seq

Genomic Coordinates Forward (+)

36299874 .. 36304047

Gene Structure 4174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGGAAATCATCTCTGCCTCCTGGTTTTCGGTTCAATCCTACTGATGTTGAGCTGGTGCAATATTATTTGAAGAGGAAGGTAATGGGAAAGAGACTCCTTGTTAAAGTTATTGCTGAGGTGGACATTTACAAATGGGCTCCTTGGGATCTTCCAGACAAGTCTTGTTGGCGAAGTGGAGATTTGAAGTGGTACTTCTTTTGTCCTAGAGAGAAAAAATATGCAAGTGGAGCTAGAATGAATCGTGCCACTGACTGTGGTTACTGGAAAACCACAGGAAAGGATAGATCTGTTCTTTACAGTAATGAAGTTGTTGGGTGGATTAAAACATTAATTTTCCACACCGGTCGAGCTCCACGAGGACAGCGGACTGATTGGGTTTTACATGAGTATAGGCTTGAAGACAAGAAACTGGTTGATATGGGTGTGCCTCAGGATTCTTATGTGCTCTGTATGGTTTTCCAAAAGGATGGGATAGGACCAAGAAGCAATAAACAATATGGTGCACCCTTCAAAGAGGAAGATTGGACTGATGATGAGGTTGAAACTGATGTAGTTCCACATGTAAACATGCCTGAGCCAAACCTTGGTCATGCAAACATTCATCAGCCAGAGCCACATCTTATTCATTCAAACATGCCTGAGCCAGACCTTGTTCAAGCAAACATACCTGATCAAGTACCTGTTAATTCAAACATCACTGAGCCCGATCTTGTTTATGGAAACATGCCCGACCCATACCTTGTTTATCCAAACATGCCTGAATCAGACCTTGATTATGCAAACATGCCTCAATCAGACCTTGGTTATGCAAACATGTCTGAGCCATCCCTTGTCTTGCCCAGCAACTATAATAGCTCTATTGCTACTCGCACCAATTCCCGTGAGTCTTGTGTTTCTGATATCTTGCCACCTTCTTGCAATGTTCTGCAGTCTGTTTCCAGTAATTATGTTACAACAGAGAAACCTCATGTTTCAACTGATGATGATATCATGTCGATGCTTAATTGCTTTACAGAAGAAGGAACTTTCTCCATGAGTGACATTGACAAAAATGAGCTTGATAATCTCATTTATTCTGGAGACGCTAATCCTATAGCTGATTTCGAAAGACATGATGATGCTCATGAAGATCGGGGAGGATTGAGCAAAAATGGATATAATATCCCCAATGGAGCTATGTCTGGAGCTCCAGGTGAGAATGAGCCATATCTGGAGCTAGTTGATCTTGACAAACCTTTGAATGGCAATAATTCCCTGTTTCCAATGATTAGTCCACCTCATACTTTTCTTGGAGAGACACCTTATGAAGACTCGTTGTTTCCATGGAGTGATGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

447

Amino Acids

50.54

Weight (kDa)

4.66

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	1.9e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49645 AT3G49645
fragaria_vesca	FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_1g18830 FvH4_2g13330 FvH4_2g13330 FvH4_2g13330
malus_domestica	MD00G1139600.v1.1 MD01G1046300.v1.1 MD04G1240700.v1.1 MD15G1405500.v1.1
prunus_persica	Prupe.6G211100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109701 RchiOBHm_Chr5g0054161 RchiOBHm_Chr6g0274761
rosa_laevigata	RLG00000013524 RLG00000017757 RLG00000017758 RLG00000030253 RLG00000030255 RLG00000030257 RLG00000030259 RLG00000030260 RLG00000030262 RLG00000030263
rosa_multiflora	Rmu_sc0000507.1_g000008 Rmu_sc0000509.1_g000038 Rmu_sc0001938.1_g000001 Rmu_sc0002076.1_g000012 Rmu_sc0006223.1_g000006 Rmu_sc0006889.1_g000015
rosa_roxburghii	Rroxscaffold_2G00134010 Rroxscaffold_4G00326300 Rroxscaffold_4G00326330 Rroxscaffold_7G00193960
rosa_rugosa	Rorug02G0162000 Rorug06G0083900 Rorug06G0084000 Rorug06G0084100
rosa_samantha	Rh2AG214500 Rh2BG224800 Rh2CG216700 Rh2DG220000 Rh5AG354600 Rh6AG199700 Rh6BG203400 Rh6CG203600 Rh6DG195100
rosa_wichuraiana	Rw0G009640 Rw1G004950 Rw6G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	587
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	194, 681
AfiI	CCNNNNNNNGG	2 cut(s)	587, 1244
AflIII	ACRYGT	2 cut(s)	562, 816
AgeI	ACCGGT	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	22, 1192
AluBI	AGCT	9 cut(s)	55, 233, 353, 858, 1060, 1100, 1178, 1190, 1219
AluI	AGCT	9 cut(s)	55, 233, 353, 858, 1060, 1100, 1178, 1190, 1219
Alw21I	GWGCWC	4 cut(s)	355, 450, 508, 1192
Alw26I	GTCTC	3 cut(s)	88, 1077, 1292
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	504
AseI	ATTAAT	1 cut(s)	332
AsiGI	ACCGGT	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	1208
AsuII	TTCGAA	1 cut(s)	1107
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	4 cut(s)	142, 355, 708, 1192
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	408, 1317
Bbv12I	GWGCWC	4 cut(s)	355, 450, 508, 1192
BbvCI	CCTCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	464, 835
BciT130I	CCWGG	2 cut(s)	24, 1194
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	3 cut(s)	88, 1077, 1292
BfaI	CTAG	3 cut(s)	207, 234, 1220
BfmI	CTRYAG	2 cut(s)	929, 1095
BglII	AGATCT	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	24, 1194
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	24, 1194
BmsI	GCATC	2 cut(s)	990, 1111
BpiI	GAAGAC	2 cut(s)	408, 1317
BpmI	CTGGAG	4 cut(s)	1101, 1176, 1206, 1235
Bpu10I	CCTNAGC	3 cut(s)	117, 576, 642
Bpu14I	TTCGAA	1 cut(s)	1107
BsaJI	CCNNGG	4 cut(s)	143, 586, 802, 1325
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	587, 1244
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	3 cut(s)	269, 417, 942
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	928
BseBI	CCWGG	2 cut(s)	24, 1194
BseDI	CCNNGG	4 cut(s)	143, 586, 802, 1325
BseGI	GGATG	2 cut(s)	475, 827
BseLI	CCNNNNNNNGG	2 cut(s)	587, 1244
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	6 cut(s)	108, 446, 567, 633, 693, 813
BseNI	ACTGG	3 cut(s)	269, 417, 942
BseSI	GKGCMC	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	842
Bsh1285I	CGRYCG	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	4 cut(s)	355, 450, 508, 1192
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	587, 1244
BsmAI	GTCTC	3 cut(s)	88, 1077, 1292
BsmBI	CGTCTC	1 cut(s)	1077
Bsp119I	TTCGAA	1 cut(s)	1107
Bsp1286I	GDGCHC	6 cut(s)	142, 355, 450, 508, 708, 1192
Bsp143I	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
Bsp19I	CCATGG	1 cut(s)	1325
BspACI	CCGC	1 cut(s)	367
BspCNI	CTCAG	6 cut(s)	109, 445, 568, 634, 694, 814
BspHI	TCATGA	1 cut(s)	1126
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	933
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	1107
BsrDI	GCAATG	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	269, 417, 942
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	4 cut(s)	143, 586, 802, 1325
BssMI	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	4 cut(s)	143, 586, 802, 1325
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	24, 1194
Bst4CI	ACNGT	2 cut(s)	257, 302
Bst6I	CTCTTC	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	1107
BstDEI	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
BstDSI	CCRYGG	1 cut(s)	1325
BstF5I	GGATG	2 cut(s)	475, 827
BstKTI	GATC	6 cut(s)	151, 290, 676, 712, 1135, 1228
BstMAI	GTCTC	3 cut(s)	88, 1077, 1292
BstMBI	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	2 cut(s)	24, 1194
BstNSI	RCATGY	7 cut(s)	566, 574, 640, 730, 760, 790, 820
BstSCI	CCNGG	2 cut(s)	22, 1192
BstSFI	CTRYAG	2 cut(s)	929, 1095
BstSLI	GKGCMC	1 cut(s)	508
BstV2I	GAAGAC	2 cut(s)	408, 1317
BstX2I	RGATCY	2 cut(s)	148, 287
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	148, 287
Bsu36I	CCTNAGG	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	1325
BtsCI	GGATG	2 cut(s)	475, 827
BtsIMutI	CAGTG	2 cut(s)	249, 699
CciI	TCATGA	1 cut(s)	1126
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	1094
Csp6I	GTAC	2 cut(s)	193, 680
CspAI	ACCGGT	1 cut(s)	344
CviQI	GTAC	2 cut(s)	193, 680
DdeI	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
DpnI	GATC	6 cut(s)	150, 289, 675, 711, 1134, 1227
DpnII	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	2 cut(s)	353, 1190
Eco130I	CCWWGG	4 cut(s)	143, 586, 802, 1325
Eco24I	GRGCYC	4 cut(s)	142, 355, 708, 1192
Eco32I	GATATC	2 cut(s)	904, 991
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	2 cut(s)	353, 1190
Eco81I	CCTNAGG	1 cut(s)	432
EcoICRI	GAGCTC	2 cut(s)	353, 1190
EcoRII	CCWGG	2 cut(s)	22, 1192
EcoRV	GATATC	2 cut(s)	904, 991
EcoT14I	CCWWGG	4 cut(s)	143, 586, 802, 1325
EcoT38I	GRGCYC	4 cut(s)	142, 355, 708, 1192
ErhI	CCWWGG	4 cut(s)	143, 586, 802, 1325
Esp3I	CGTCTC	1 cut(s)	1077
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FbaI	TGATCA	1 cut(s)	673
FokI	GGATG	2 cut(s)	482, 814
FriOI	GRGCYC	4 cut(s)	142, 355, 708, 1192
FspBI	CTAG	3 cut(s)	207, 234, 1220
GsaI	CCCAGC	1 cut(s)	846
GsuI	CTGGAG	4 cut(s)	1101, 1176, 1206, 1235
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	1094
HinfI	GANTC	6 cut(s)	96, 241, 437, 764, 887, 1313
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	1208
Hpy166II	GTNNAC	4 cut(s)	124, 506, 568, 1277
Hpy188I	TCNGA	4 cut(s)	769, 799, 823, 901
Hpy188III	TCNNGA	7 cut(s)	155, 434, 1080, 1127, 1185, 1214, 1229
Hpy8I	GTNNAC	4 cut(s)	124, 506, 568, 1277
HpyAV	CCTTC	4 cut(s)	73, 520, 924, 1016
HpyCH4III	ACNGT	2 cut(s)	257, 302
HpyCH4V	TGCA	8 cut(s)	61, 224, 506, 596, 782, 812, 921, 931
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
LmnI	GCTCC	7 cut(s)	145, 230, 358, 1175, 1187, 1195, 1216
LweI	GCATC	2 cut(s)	990, 1111
MaeI	CTAG	3 cut(s)	207, 234, 1220
MaeIII	GTNAC	3 cut(s)	260, 952, 1040
MalI	GATC	6 cut(s)	150, 289, 675, 711, 1134, 1227
MboI	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
MboII	GAAGA	7 cut(s)	85, 143, 413, 533, 1031, 1142, 1322
MflI	RGATCY	2 cut(s)	148, 287
MhlI	GDGCHC	6 cut(s)	142, 355, 450, 508, 708, 1192
MluCI	AATT	6 cut(s)	333, 688, 877, 946, 1006, 1252
MlyI	GAGTC	3 cut(s)	90, 896, 1307
MseI	TTAA	5 cut(s)	105, 324, 332, 687, 1005
MslI	CAYNNNNRTG	2 cut(s)	998, 1119
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	24, 1194
MvaI	CCWGG	2 cut(s)	24, 1194
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	1325
NdeII	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	1040
NspI	RCATGY	7 cut(s)	566, 574, 640, 730, 760, 790, 820
NspV	TTCGAA	1 cut(s)	1107
PagI	TCATGA	1 cut(s)	1126
PciI	ACATGT	2 cut(s)	562, 816
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	241, 437, 764
PflMI	CCANNNNNTGG	1 cut(s)	587
PinAI	ACCGGT	1 cut(s)	344
PleI	GAGTC	3 cut(s)	90, 895, 1307
PpsI	GAGTC	3 cut(s)	90, 895, 1307
PscI	ACATGT	2 cut(s)	562, 816
PshBI	ATTAAT	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	355, 1192
Psp6I	CCWGG	2 cut(s)	22, 1192
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	2 cut(s)	22, 1192
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	933
PsuI	RGATCY	2 cut(s)	148, 287
RsaI	GTAC	2 cut(s)	194, 681
RsaNI	GTAC	2 cut(s)	193, 680
RseI	CAYNNNNRTG	2 cut(s)	998, 1119
SacI	GAGCTC	2 cut(s)	355, 1192
SaqAI	TTAA	5 cut(s)	105, 324, 332, 687, 1005
Sau3AI	GATC	6 cut(s)	148, 287, 673, 709, 1132, 1225
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	3 cut(s)	90, 896, 1307
ScrFI	CCNGG	2 cut(s)	24, 1194
SduI	GDGCHC	6 cut(s)	142, 355, 450, 508, 708, 1192
SfaNI	GCATC	2 cut(s)	990, 1111
SfcI	CTRYAG	2 cut(s)	929, 1095
SfuI	TTCGAA	1 cut(s)	1107
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	2 cut(s)	998, 1119
Sse9I	AATT	6 cut(s)	333, 688, 877, 946, 1006, 1252
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	3 cut(s)	207, 234, 1220
SstI	GAGCTC	2 cut(s)	355, 1192
StyD4I	CCNGG	2 cut(s)	22, 1192
StyI	CCWWGG	4 cut(s)	143, 586, 802, 1325
TaaI	ACNGT	2 cut(s)	257, 302
TaqI	TCGA	3 cut(s)	349, 998, 1107
TasI	AATT	6 cut(s)	333, 688, 877, 946, 1006, 1252
TfiI	GAWTC	3 cut(s)	241, 437, 764
Tru1I	TTAA	5 cut(s)	105, 324, 332, 687, 1005
Tru9I	TTAA	5 cut(s)	105, 324, 332, 687, 1005
TscAI	CASTG	2 cut(s)	256, 706
TseFI	GTSAC	1 cut(s)	1040
Tsp45I	GTSAC	1 cut(s)	1040
TspDTI	ATGAA	6 cut(s)	254, 321, 593, 617, 1143, 1323
TspRI	CASTG	2 cut(s)	256, 706
Van91I	CCANNNNNTGG	1 cut(s)	587
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	332
XceI	RCATGY	7 cut(s)	566, 574, 640, 730, 760, 790, 820
XspI	CTAG	3 cut(s)	207, 234, 1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.