Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Reverse (-)

9792523 .. 9793259

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17585.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCCAACAAGGTTCACGTAGGGAACATTGAGATGGAGGAAGGTTTGAGCAAGACGAAGTGGATGGTTCTAGAACCTTCTGAGAAGATCAAGAAGATTCCGAAAAGGCTTTGGAGTGTTGGAAAAGAAGATCCGAGGAGAGTGATACATGCATTTAAAGTAGGTCATTCCTTGACACTCGTTTCTTTGCTATATTTCATGGAGAATCTCTTCAAAGGCATTGGAAGCAATGCTATTTGGGCCGTCATGACTGTCGTCGCCGTCCTCCTCGAGTTCTTTGCCGTGGAGGGCTTGACGATAAGCGAGAAAGTAATCCTTTCGATGGCAGCCCGAGGCAGAGAATCAGCTGCGGAACCACACGAGCGGAATGAGGCAGGCAATGTTTGCCACTCTATCAAGTTCCTCCCGAAGTCAATAGCACGGGCAAAGCAACATCATGTCCTTAACCAGCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.1

Weight (kDa)

9.55

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	38 - 92	3.1e-21	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	2 cut(s)	350, 364
AclWI	GGATC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	2 cut(s)	269, 330
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	326, 347
Asp700I	GAANNNNTTC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	240
AvaI	CYCGRG	2 cut(s)	269, 330
BauI	CACGAG	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	334, 338
BccI	CCATC	3 cut(s)	28, 58, 316
BceAI	ACGGC	3 cut(s)	227, 245, 266
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BfaI	CTAG	2 cut(s)	71, 457
BisI	GCNGC	2 cut(s)	327, 348
BlsI	GCNGC	2 cut(s)	328, 349
BmeT110I	CYCGRG	2 cut(s)	269, 330
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	354
BoxI	GACNNNNGTC	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	134, 282, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	235, 385
BseDI	CCNNGG	3 cut(s)	134, 282, 331
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	2 cut(s)	235, 385
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	151, 257
BseXI	GCAGC	2 cut(s)	334, 338
BshFI	GGCC	1 cut(s)	242
BsiHKCI	CYCGRG	2 cut(s)	269, 330
BslI	CCNNNNNNNGG	1 cut(s)	322
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	2 cut(s)	269, 330
Bsp143I	GATC	2 cut(s)	87, 130
BspACI	CCGC	2 cut(s)	350, 364
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	2 cut(s)	235, 385
BssECI	CCNNGG	3 cut(s)	134, 282, 331
BssMI	GATC	2 cut(s)	87, 130
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	90, 133
BstMBI	GATC	2 cut(s)	87, 130
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 239, 384
BstNSI	RCATGY	1 cut(s)	152
BstPAI	GACNNNNGTC	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	334, 338
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	376
CciI	TCATGA	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	240
CviAII	CATG	4 cut(s)	149, 199, 247, 437
CviJI	RGCY	6 cut(s)	109, 242, 291, 329, 347, 451
CviKI_1	RGCY	6 cut(s)	109, 242, 291, 329, 347, 451
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	89, 132
DpnII	GATC	2 cut(s)	87, 130
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco88I	CYCGRG	2 cut(s)	269, 330
EcoT22I	ATGCAT	1 cut(s)	154
FaeI	CATG	4 cut(s)	152, 202, 250, 440
FaiI	YATR	6 cut(s)	150, 193, 200, 248, 438, 454
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	4 cut(s)	148, 198, 246, 436
Fnu4HI	GCNGC	2 cut(s)	327, 348
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	327, 348
FspBI	CTAG	2 cut(s)	71, 457
GluI	GCNGC	2 cut(s)	327, 348
HaeIII	GGCC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	152, 202, 250, 440
HinfI	GANTC	3 cut(s)	97, 205, 341
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	82, 102, 135
Hpy188III	TCNNGA	4 cut(s)	71, 91, 247, 406
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	35, 87
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 239, 384
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	152, 202, 250, 440
Kzo9I	GATC	2 cut(s)	87, 130
LpnPI	CCDG	1 cut(s)	360
Lsp1109I	GCAGC	2 cut(s)	334, 338
MaeI	CTAG	2 cut(s)	71, 457
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	89, 132
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	2 cut(s)	87, 130
MboII	GAAGA	4 cut(s)	97, 106, 140, 202
MflI	RGATCY	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	30, 100
MnlI	CCTC	8 cut(s)	31, 129, 275, 278, 280, 326, 364, 413
Mph1103I	ATGCAT	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	2 cut(s)	156, 444
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	225, 239, 384
NdeII	GATC	2 cut(s)	87, 130
NlaIII	CATG	4 cut(s)	152, 202, 250, 440
NlaIV	GGNNCC	1 cut(s)	354
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	269
PagI	TCATGA	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	97, 205, 341
PkrI	GCNGC	2 cut(s)	328, 349
Ppu21I	YACGTR	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	240
PspXI	VCTCGAGB	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	156, 444
SatI	GCNGC	2 cut(s)	327, 348
Sau3AI	GATC	2 cut(s)	87, 130
Sau96I	GGNCC	1 cut(s)	240
SetI	ASST	6 cut(s)	15, 21, 46, 79, 166, 349
Sfr274I	CTCGAG	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SsiI	CCGC	2 cut(s)	350, 364
SspMI	CTAG	2 cut(s)	71, 457
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	270, 320
TfiI	GAWTC	3 cut(s)	97, 205, 341
Tru1I	TTAA	2 cut(s)	156, 444
Tru9I	TTAA	2 cut(s)	156, 444
TseI	GCWGC	2 cut(s)	326, 347
TspDTI	ATGAA	1 cut(s)	187
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	71, 457
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.