Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Reverse (-)

41093284 .. 41096411

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGACTTCTGCAGATTTGGTTGATATGGAGAACAGCAGCTGCGGCGGAGGGCCTTTCGGTCGCGTGGTGCGGTGGCTGAAGGCGGTGCCGGAGAGGTCATGGGGTAAGGTACTGGAGGCGGCGAGGGAGGCGAAGAAGCTCGGGGAGGATGATCCGAGAAGGATTGTGCATTCGTTCAAAGTAGGGTTGGCTCTGACGTTGGTGTCTCTTTTTTTTTACTATCGACCGCTTTATGATGGCTTCGGTGTCGATGCAATGTGGGCTGTCTTGACCGTGATCGTTGTCTTTGAGTTCTCAGTTGGAGCAACCCTAGGGAAGGGTATAAATAGGATGTTGGCAACTTTGCTGGCTGGTGCTCTAGCTGTTGGAGTTCATCACATATCAACTCTTTGGGGAGGAGAAGTCGGGGAGCCCATATTGATTGCATTTTTCGTCTTTGTTGTAGCTGCAAGTGTGACCTTCATGAGATTCTTCCCCGCATTGAAGGCAAGGTATGACTACGGGATGTTGATATTCATACTGACCTTCTGCTTGGTTTCGGTATCTGGCTACCGCGAAACGCAGGTACTAGACATGGCACACAAGAGGCTATCAACGATTGCGATAGGAAGCTGTACTCCTATTATGGTTTGTATTTGCATTTGCCCCGTGTGGATTGGAGTTGATCTCCACAATTTGGTTGCTGGTAACATGGAAAAGCTTGGGGATTTTATGGAAGGATTTGGATTTGAATACTTTGTCATAAAAGAGAATGGGTTGTCATTAAGTGATAATCAATCTTTTCTTCAGCAATATAAAAGTGTTCTTTCATCAAAAAGCCTTGAAGAAACCATGGCTAACTTGGCAAGATGGGAACCAGGTCATGGCGGGTTCAAGTTCGGCCACCCATGGGAGAAGTATTTGAATGTTGGAAGCCAAACTCGGCAATGTGCTTATAAAATTGAAGCTCTTAACACTTACCTGAACACTGATATCCAAGTGCCCGCTGAAATTCGAAGCAAAATTCAAGAACCATGCATAGATATTTGCACTGAATCCGGAAAAGCATTGAAGGAATTAGCAGCAGCCCTCAAGAAAATGACTCGGTCATCATCAGCTGATTCCCACATTGCATGCTCAAAAGCAGCAGTTGAGAGTCTCAAGTTGTCACTCAAAAGAGGCATATGGAAAGATGCTAATCTGCTGGAAACAATACCATCTGCTGCAGTGGCGTCACTTCTTATTGAAGTCGTAGCTTGTGTTGAGAAGATTGCTGAAGCAGTTCACGAACTAGCATCCGTCGCACATTTCAAGACTGAACAACCACAATTACTTCAGGAGCCGGTGCTTTCTGAAGAATATCATATTACTATTACAATTGATCGTAATTCAACTGAGGGGCTACCCAAAAATGGAAGTTCAGATGGGATCACTACTAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

474

Amino Acids

51.99

Weight (kDa)

6.16

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	46 - 386	2.2e-142	Aluminium activated malate transporter
FUSC_2	PF13515	84 - 206	4.7e-08	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AasI	GACNNNNNNGTC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	85
AccB7I	CCANNNNNTGG	2 cut(s)	676, 863
AccII	CGCG	2 cut(s)	63, 555
AccIII	TCCGGA	1 cut(s)	1037
AclWI	GGATC	2 cut(s)	146, 1415
AcoI	YGGCCR	1 cut(s)	880
AcsI	RAATTY	2 cut(s)	990, 1002
AcuI	CTGAAG	5 cut(s)	98, 770, 1275, 1298, 1353
AcyI	GRCGYC	1 cut(s)	1211
AfaI	GTAC	3 cut(s)	111, 567, 616
AfiI	CCNNNNNNNGG	5 cut(s)	316, 676, 863, 889, 1391
AjnI	CCWGG	1 cut(s)	856
AluBI	AGCT	9 cut(s)	39, 139, 362, 446, 612, 700, 947, 1097, 1235
AluI	AGCT	9 cut(s)	39, 139, 362, 446, 612, 700, 947, 1097, 1235
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	210, 1142
AlwI	GGATC	2 cut(s)	146, 1415
AlwNI	CAGNNNCTG	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	1037
AoxI	GGCC	2 cut(s)	50, 880
ApeKI	GCWGC	7 cut(s)	36, 39, 446, 1061, 1064, 1124, 1202
ApoI	RAATTY	2 cut(s)	990, 1002
Asp700I	GAANNNNTTC	1 cut(s)	1260
AspA2I	CCTAGG	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	994
AvaI	CYCGRG	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	984
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	7 cut(s)	26, 48, 433, 1073, 1076, 1136, 1189
BccI	CCATC	4 cut(s)	230, 843, 1204, 1397
BciT130I	CCWGG	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	210, 1142
BfaI	CTAG	4 cut(s)	311, 359, 569, 1271
BfmI	CTRYAG	2 cut(s)	9, 1203
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1062, 1065, 1125, 1203
BlnI	CCTAGG	1 cut(s)	310
BlsI	GCNGC	9 cut(s)	38, 41, 44, 121, 448, 1063, 1066, 1126, 1204
Bme1390I	CCNGG	1 cut(s)	858
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	4 cut(s)	87, 411, 855, 1320
BmrFI	CCNGG	1 cut(s)	858
BmsI	GCATC	3 cut(s)	241, 1162, 1283
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpmI	CTGGAG	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	994
BpuEI	CTTGAG	2 cut(s)	1055, 1124
BsaBI	GATNNNNATC	1 cut(s)	1176
BsaHI	GRCGYC	1 cut(s)	1211
BsaJI	CCNNGG	3 cut(s)	310, 831, 887
BsaWI	WCCGGW	1 cut(s)	1037
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 676, 863, 889, 1391
Bse118I	RCCGGY	1 cut(s)	1321
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	3 cut(s)	261, 932, 1107
Bse8I	GATNNNNATC	1 cut(s)	1176
BseAI	TCCGGA	1 cut(s)	1037
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	3 cut(s)	310, 831, 887
BseGI	GGATG	4 cut(s)	154, 336, 510, 1274
BseJI	GATNNNNATC	1 cut(s)	1176
BseLI	CCNNNNNNNGG	5 cut(s)	316, 676, 863, 889, 1391
BseMI	GCAATG	3 cut(s)	261, 932, 1107
BseMII	CTCAG	2 cut(s)	309, 1365
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	984
BseXI	GCAGC	7 cut(s)	26, 48, 433, 1073, 1076, 1136, 1189
Bsh1236I	CGCG	2 cut(s)	63, 555
Bsh1285I	CGRYCG	2 cut(s)	61, 227
BshFI	GGCC	2 cut(s)	52, 882
BshNI	GGYRCC	1 cut(s)	85
BsiEI	CGRYCG	2 cut(s)	61, 227
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	89, 1038, 1322
BslI	CCNNNNNNNGG	5 cut(s)	316, 676, 863, 889, 1391
BsmAI	GTCTC	2 cut(s)	210, 1142
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	52, 882
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	994
Bsp1286I	GDGCHC	3 cut(s)	358, 414, 984
Bsp13I	TCCGGA	1 cut(s)	1037
Bsp143I	GATC	5 cut(s)	151, 276, 664, 1360, 1407
Bsp19I	CCATGG	2 cut(s)	831, 887
BspANI	GGCC	2 cut(s)	52, 882
BspCNI	CTCAG	2 cut(s)	308, 1366
BspEI	TCCGGA	1 cut(s)	1037
BspFNI	CGCG	2 cut(s)	63, 555
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	4 cut(s)	87, 411, 855, 1320
BspMAI	CTGCAG	2 cut(s)	13, 1207
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	2 cut(s)	146, 1415
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	3 cut(s)	261, 932, 1107
BsrFI	RCCGGY	1 cut(s)	1321
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	1321
BssECI	CCNNGG	3 cut(s)	310, 831, 887
BssMI	GATC	5 cut(s)	151, 276, 664, 1360, 1407
BssNI	GRCGYC	1 cut(s)	1211
BssT1I	CCWWGG	3 cut(s)	310, 831, 887
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	1211
BstBI	TTCGAA	1 cut(s)	994
BstC8I	GCNNGC	3 cut(s)	348, 984, 1114
BstDEI	CTNAG	2 cut(s)	295, 1374
BstDSI	CCRYGG	2 cut(s)	831, 887
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	4 cut(s)	154, 336, 510, 1274
BstFNI	CGCG	2 cut(s)	63, 555
BstKTI	GATC	5 cut(s)	154, 279, 667, 1363, 1410
BstMAI	GTCTC	2 cut(s)	210, 1142
BstMBI	GATC	5 cut(s)	151, 276, 664, 1360, 1407
BstMCI	CGRYCG	2 cut(s)	61, 227
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 128, 260, 485, 842, 1208, 1280
BstNI	CCWGG	1 cut(s)	858
BstNSI	RCATGY	1 cut(s)	1116
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	2 cut(s)	9, 1203
BstSLI	GKGCMC	1 cut(s)	984
BstUI	CGCG	2 cut(s)	63, 555
BstV1I	GCAGC	7 cut(s)	26, 48, 433, 1073, 1076, 1136, 1189
BsuRI	GGCC	2 cut(s)	52, 882
BtgI	CCRYGG	2 cut(s)	831, 887
BtsCI	GGATG	4 cut(s)	154, 336, 510, 1274
BtsI	GCAGTG	1 cut(s)	1212
BtsIMutI	CAGTG	3 cut(s)	966, 1029, 1212
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	3 cut(s)	348, 984, 1114
CaiI	CAGNNNCTG	1 cut(s)	39
CciI	TCATGA	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	1321
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	1 cut(s)	1200
CsiI	ACCWGGT	1 cut(s)	856
Csp6I	GTAC	3 cut(s)	110, 566, 615
CviAII	CATG	9 cut(s)	99, 463, 574, 691, 832, 863, 888, 1014, 1113
CviQI	GTAC	3 cut(s)	110, 566, 615
DdeI	CTNAG	2 cut(s)	295, 1374
DpnI	GATC	5 cut(s)	153, 278, 666, 1362, 1409
DpnII	GATC	5 cut(s)	151, 276, 664, 1360, 1407
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	880
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	3 cut(s)	310, 831, 887
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	973
Eco57I	CTGAAG	5 cut(s)	98, 770, 1275, 1298, 1353
Eco88I	CYCGRG	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	856
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	3 cut(s)	310, 831, 887
EcoT22I	ATGCAT	1 cut(s)	1019
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	3 cut(s)	310, 831, 887
FaeI	CATG	9 cut(s)	102, 466, 577, 694, 835, 866, 891, 1017, 1116
FatI	CATG	9 cut(s)	98, 462, 573, 690, 831, 862, 887, 1013, 1112
FauI	CCCGC	3 cut(s)	484, 860, 991
FauNDI	CATATG	1 cut(s)	1163
Fnu4HI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1062, 1065, 1125, 1203
FokI	GGATG	4 cut(s)	161, 343, 517, 1261
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1062, 1065, 1125, 1203
FspBI	CTAG	4 cut(s)	311, 359, 569, 1271
GluI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1062, 1065, 1125, 1203
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	52, 882
HapII	CCGG	3 cut(s)	89, 1038, 1322
HgaI	GACGC	1 cut(s)	1200
Hin1I	GRCGYC	1 cut(s)	1211
Hin1II	CATG	9 cut(s)	102, 466, 577, 694, 835, 866, 891, 1017, 1116
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	5 cut(s)	468, 1034, 1081, 1100, 1135
HpaII	CCGG	3 cut(s)	89, 1038, 1322
Hpy166II	GTNNAC	1 cut(s)	1264
Hpy188I	TCNGA	4 cut(s)	156, 195, 1333, 1402
Hpy188III	TCNNGA	8 cut(s)	268, 463, 1007, 1038, 1072, 1265, 1291, 1316
Hpy8I	GTNNAC	1 cut(s)	1264
Hpy99I	CGWCG	1 cut(s)	1283
HpyAV	CCTTC	8 cut(s)	73, 153, 310, 469, 478, 535, 710, 1045
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 128, 260, 485, 842, 1208, 1280
HpyF3I	CTNAG	2 cut(s)	295, 1374
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	1211
Hsp92II	CATG	9 cut(s)	102, 466, 577, 694, 835, 866, 891, 1017, 1116
Kpn2I	TCCGGA	1 cut(s)	1037
Kzo9I	GATC	5 cut(s)	151, 276, 664, 1360, 1407
LmnI	GCTCC	3 cut(s)	302, 409, 1318
Lsp1109I	GCAGC	7 cut(s)	26, 48, 433, 1073, 1076, 1136, 1189
LweI	GCATC	3 cut(s)	241, 1162, 1283
MabI	ACCWGGT	1 cut(s)	856
MaeI	CTAG	4 cut(s)	311, 359, 569, 1271
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	4 cut(s)	454, 686, 1146, 1212
MalI	GATC	5 cut(s)	153, 278, 666, 1362, 1409
MboI	GATC	5 cut(s)	151, 276, 664, 1360, 1407
MboII	GAAGA	6 cut(s)	145, 463, 776, 836, 1258, 1346
MfeI	CAATTG	1 cut(s)	1356
MhlI	GDGCHC	3 cut(s)	358, 414, 984
MluCI	AATT	8 cut(s)	673, 939, 990, 1002, 1055, 1307, 1356, 1366
MlyI	GAGTC	2 cut(s)	1075, 1144
MmeI	TCCRAC	3 cut(s)	280, 346, 889
Mph1103I	ATGCAT	1 cut(s)	1019
MroI	TCCGGA	1 cut(s)	1037
MroXI	GAANNNNTTC	1 cut(s)	1260
MseI	TTAA	3 cut(s)	764, 951, 1423
MspA1I	CMGCKG	3 cut(s)	39, 986, 1097
MspI	CCGG	3 cut(s)	89, 1038, 1322
MspR9I	CCNGG	1 cut(s)	858
MunI	CAATTG	1 cut(s)	1356
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	858
MvnI	CGCG	2 cut(s)	63, 555
MwoI	GCNNNNNNNGC	7 cut(s)	42, 128, 260, 485, 842, 1208, 1280
NcoI	CCATGG	2 cut(s)	831, 887
NdeI	CATATG	1 cut(s)	1163
NdeII	GATC	5 cut(s)	151, 276, 664, 1360, 1407
NlaIII	CATG	9 cut(s)	102, 466, 577, 694, 835, 866, 891, 1017, 1116
NlaIV	GGNNCC	4 cut(s)	87, 411, 855, 1320
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	3 cut(s)	454, 1146, 1212
NsiI	ATGCAT	1 cut(s)	1019
NspI	RCATGY	1 cut(s)	1116
NspV	TTCGAA	1 cut(s)	994
PaeI	GCATGC	1 cut(s)	1116
PagI	TCATGA	1 cut(s)	462
PctI	GAATGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	1260
PfeI	GAWTC	3 cut(s)	468, 1034, 1100
PflFI	GACNNNGTC	1 cut(s)	1084
PflMI	CCANNNNNTGG	2 cut(s)	676, 863
PkrI	GCNGC	9 cut(s)	38, 41, 44, 121, 448, 1063, 1066, 1126, 1204
PleI	GAGTC	2 cut(s)	1075, 1143
PpsI	GAGTC	2 cut(s)	1075, 1143
PsiI	TTATAA	1 cut(s)	936
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PspN4I	GGNNCC	4 cut(s)	87, 411, 855, 1320
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	2 cut(s)	13, 1207
PstNI	CAGNNNCTG	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	1084
PvuII	CAGCTG	2 cut(s)	39, 1097
RsaI	GTAC	3 cut(s)	111, 567, 616
RsaNI	GTAC	3 cut(s)	110, 566, 615
SaqAI	TTAA	3 cut(s)	764, 951, 1423
SatI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1062, 1065, 1125, 1203
Sau3AI	GATC	5 cut(s)	151, 276, 664, 1360, 1407
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	1075, 1144
ScrFI	CCNGG	1 cut(s)	858
SduI	GDGCHC	3 cut(s)	358, 414, 984
SexAI	ACCWGGT	1 cut(s)	856
SfaNI	GCATC	3 cut(s)	241, 1162, 1283
SfcI	CTRYAG	2 cut(s)	9, 1203
SfuI	TTCGAA	1 cut(s)	994
SmlI	CTYRAG	2 cut(s)	1070, 1139
SmoI	CTYRAG	2 cut(s)	1070, 1139
SphI	GCATGC	1 cut(s)	1116
Sse9I	AATT	8 cut(s)	673, 939, 990, 1002, 1055, 1307, 1356, 1366
SspMI	CTAG	4 cut(s)	311, 359, 569, 1271
StyD4I	CCNGG	1 cut(s)	856
StyI	CCWWGG	3 cut(s)	310, 831, 887
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	223, 249, 994
TaqII	GACCGA	2 cut(s)	47, 1074
TasI	AATT	8 cut(s)	673, 939, 990, 1002, 1055, 1307, 1356, 1366
TatI	WGTACW	1 cut(s)	614
TauI	GCSGC	2 cut(s)	45, 122
TfiI	GAWTC	3 cut(s)	468, 1034, 1100
Tru1I	TTAA	3 cut(s)	764, 951, 1423
Tru9I	TTAA	3 cut(s)	764, 951, 1423
TscAI	CASTG	3 cut(s)	973, 1036, 1212
TseFI	GTSAC	3 cut(s)	454, 1146, 1212
TseI	GCWGC	7 cut(s)	36, 39, 446, 1061, 1064, 1124, 1202
Tsp45I	GTSAC	3 cut(s)	454, 1146, 1212
TspDTI	ATGAA	4 cut(s)	362, 451, 505, 798
TspGWI	ACGGA	1 cut(s)	1267
TspRI	CASTG	3 cut(s)	973, 1036, 1212
Tth111I	GACNNNGTC	1 cut(s)	1084
Van91I	CCANNNNNTGG	2 cut(s)	676, 863
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	2 cut(s)	990, 1002
XceI	RCATGY	1 cut(s)	1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XmaJI	CCTAGG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	1260
XspI	CTAG	4 cut(s)	311, 359, 569, 1271
Zsp2I	ATGCAT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.