FvH4_3g26530

aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
19603192 .. 19605660
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26530.t1

Sequence Viewer

Length: 1317 bp
ATGGCATCTTCAAACAATGAGCAGGATCATGTTAAAGCTGCAGGACTCTTCGACAGGTTATGGGGGAAGATAGTTAAGTTTGGCTTGATGTTAAAGAAACTAGGGCAAGATGATCCAAGAAGAGTCGTTCATTCTCTTAAAGTGGCACTTGCTCTTACGTTGGTCTCCATGTTATTCTACTTTGAACCTCTCTACGAAGGTTTCGGTCTTGCTGCTATGTGGGCTATTCTCACTGTTGTGGTAGTTTTTGAATTTTCTGTCGGTGCAACGATAGGACGAGGTTTGAATAGAATGTTGTCAACTGTAGTTGCTGCTGCTCTTGGTATTGGAGCTCATCGATTAGCAACTCTTTCTGGAAATGAAGGAGAGCCTATACTTATTGCTCTCTTTGTCTTCGTAGAAGCTGCAATAGTGACATTCTTCAGATTCATTCCCCAAATGAAGGCAAGATACGATTATGGATTGCTAATATTCAACTTGACATTCTGCCTGGTATCGGTGTCTGGCTATCGTGACGAAGAGGTTATACGATTGGGATTCGAGAGGGTAATTACTATCATCATCGGAAGCATTACAGCTGTTGCTGTTTGTCTTTTCATTCGTCCAGTATGGATTGGGGTGGAGCTTCACAATCAGATTGCTAACAACATGGACAAGCTTGCTAATTTCTTACAAGGATTTGGAGATGAATACTTTAAAGTATCTGAGGATGGACACAGCAGAGATAAGCCGTCGTGTCTTGAGGGATATAAAAGTGTTCTAACGTCAAAAGGCAGTGAAGATACCATGGCTAATTTGGCAAGATGGGAACCGGGACATGGGAGGTTCAGGTTTCGTCATCCATGGAAACAATACTTGAAAGTTGGAGCCCTAACTCGCCAATGTGCGTTCAAAATTGAAGCTCTCAACAACTACCTTACCTCCGAAACCCAAACTCCTCAAGAAGTTAAAAGCATAATACAGGGACCAAGCGTGGTTATAAGCTCAGAGTGTGGGAAAGCATTGAAGGAGTTAGCAACCTTTATGAGGAAAATGACCAAATCATCGTCAAATGAAGCTCACATTGCAAAGTCAAAAGATGCTGCTGAAGAACTCAAAGCTGTAATAAGATCAAGCTTGTGTAAACACCCAGGTGATTCCCTACATATAATACAAGAAGGTGCAGTGGCTTCACTACTCTTTGAGATCATCACATGTACAGAGAAAATTGCTGAGGCTGCGCATAAGCTAGCATCCCAAGCACATTTTAAGGATGTGAAGCCAAGAGTAACACCGGGTCAGGATGGGTCGTCACACCATGTTATTACGATTGAGTGA

Protein Analysis

439

Amino Acids

48.41

Weight (kDa)

8.69

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 33 - 372 1.7e-138 Aluminium activated malate transporter
FUSC_2 PF13515 72 - 196 7e-10 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis pycom03g10930 pycom11g14730
rosa_chinensis RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
Acc16I TGCGCA 1 cut(s) 1221
AclWI GGATC 2 cut(s) 33, 107
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 406, 1107
AfaI GTAC 1 cut(s) 1198
AfiI CCNNNNNNNGG 4 cut(s) 442, 496, 818, 1026
AflIII ACRYGT 1 cut(s) 1193
AgsI TTSAA 9 cut(s) 12, 185, 251, 286, 475, 859, 892, 899, 1006
AjnI CCWGG 2 cut(s) 489, 1129
AleI CACNNNNGTG 2 cut(s) 236, 1131
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 33, 107
ApeKI GCWGC 7 cut(s) 38, 212, 311, 314, 404, 1082, 1217
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 1 cut(s) 1222
AspS9I GGNCC 1 cut(s) 965
AsuC2I CCSGG 2 cut(s) 813, 1275
AsuHPI GGTGA 1 cut(s) 1145
AsuNHI GCTAGC 1 cut(s) 1228
AvaII GGWCC 1 cut(s) 965
BanII GRGCYC 2 cut(s) 334, 871
BarI GAAGNNNNNNTAC 4 cut(s) 434, 466, 510, 542
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 1212
BbvI GCAGC 7 cut(s) 25, 199, 298, 301, 391, 1069, 1204
BccI CCATC 3 cut(s) 704, 798, 1277
BceAI ACGGC 1 cut(s) 715
BciT130I CCWGG 2 cut(s) 491, 1131
BcnI CCSGG 2 cut(s) 813, 1275
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 101, 1229
BfmI CTRYAG 2 cut(s) 39, 303
BisI GCNGC 7 cut(s) 39, 213, 312, 315, 405, 1083, 1218
BlsI GCNGC 7 cut(s) 40, 214, 313, 316, 406, 1084, 1219
Bme1390I CCNGG 4 cut(s) 491, 813, 1131, 1275
Bme18I GGWCC 1 cut(s) 965
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 3 cut(s) 810, 868, 966
BmrFI CCNGG 4 cut(s) 491, 813, 1131, 1275
BmsI GCATC 3 cut(s) 14, 1069, 1241
BmtI GCTAGC 1 cut(s) 1232
BpiI GAAGAC 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 1212
BpuEI CTTGAG 2 cut(s) 761, 924
BpuMI CCSGG 2 cut(s) 813, 1275
Bsa29I ATCGAT 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 3 cut(s) 786, 842, 1129
BsaXI ACNNNNNCTCC 4 cut(s) 905, 919, 935, 949
Bsc4I CCNNNNNNNGG 4 cut(s) 442, 496, 818, 1026
Bse1I ACTGG 1 cut(s) 605
Bse3DI GCAATG 1 cut(s) 1062
BseBI CCWGG 2 cut(s) 491, 1131
BseCI ATCGAT 1 cut(s) 337
BseDI CCNNGG 3 cut(s) 786, 842, 1129
BseGI GGATG 5 cut(s) 715, 838, 1232, 1258, 1288
BseLI CCNNNNNNNGG 4 cut(s) 442, 496, 818, 1026
BseMI GCAATG 1 cut(s) 1062
BseMII CTCAG 3 cut(s) 696, 999, 1203
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 1 cut(s) 927
BseXI GCAGC 7 cut(s) 25, 199, 298, 301, 391, 1069, 1204
BsgI GTGCAG 1 cut(s) 1182
BshVI ATCGAT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 812, 1274
BslFI GGGAC 2 cut(s) 828, 978
BslI CCNNNNNNNGG 4 cut(s) 442, 496, 818, 1026
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 2 cut(s) 828, 978
Bso31I GGTCTC 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 334, 871
Bsp1407I TGTACA 1 cut(s) 1196
Bsp143I GATC 4 cut(s) 25, 112, 1109, 1185
Bsp19I CCATGG 2 cut(s) 786, 842
BspCNI CTCAG 3 cut(s) 697, 998, 1204
BspDI ATCGAT 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 810, 868, 966
BspMAI CTGCAG 1 cut(s) 43
BspOI GCTAGC 1 cut(s) 1232
BspPI GGATC 2 cut(s) 33, 107
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 1062
BsrGI TGTACA 1 cut(s) 1196
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 786, 842, 1129
BssMI GATC 4 cut(s) 25, 112, 1109, 1185
BssT1I CCWWGG 2 cut(s) 786, 842
Bst2UI CCWGG 2 cut(s) 491, 1131
Bst4CI ACNGT 2 cut(s) 235, 304
Bst6I CTCTTC 3 cut(s) 53, 115, 513
BstAUI TGTACA 1 cut(s) 1196
BstC8I GCNNGC 2 cut(s) 660, 1230
BstDEI CTNAG 3 cut(s) 705, 985, 1212
BstDSI CCRYGG 2 cut(s) 786, 842
BstENI CCTNNNNNAGG 1 cut(s) 1024
BstF5I GGATG 5 cut(s) 715, 838, 1232, 1258, 1288
BstHHI GCGC 1 cut(s) 1222
BstKTI GATC 4 cut(s) 28, 115, 1112, 1188
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 25, 112, 1109, 1185
BstMWI GCNNNNNNNGC 5 cut(s) 221, 797, 1064, 1217, 1238
BstNI CCWGG 2 cut(s) 491, 1131
BstNSI RCATGY 1 cut(s) 1197
BstSCI CCNGG 4 cut(s) 489, 811, 1129, 1273
BstSFI CTRYAG 2 cut(s) 39, 303
BstV1I GCAGC 7 cut(s) 25, 199, 298, 301, 391, 1069, 1204
BstV2I GAAGAC 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 337
BsuTUI ATCGAT 1 cut(s) 337
BtgI CCRYGG 2 cut(s) 786, 842
BtsCI GGATG 5 cut(s) 715, 838, 1232, 1258, 1288
BtsI GCAGTG 2 cut(s) 781, 1170
BtsIMutI CAGTG 3 cut(s) 231, 781, 1170
Cac8I GCNNGC 2 cut(s) 660, 1230
CfoI GCGC 1 cut(s) 1222
Cfr13I GGNCC 1 cut(s) 965
ClaI ATCGAT 1 cut(s) 337
Csp6I GTAC 1 cut(s) 1197
CviAII CATG 8 cut(s) 29, 169, 649, 787, 818, 843, 1194, 1298
CviQI GTAC 1 cut(s) 1197
DdeI CTNAG 3 cut(s) 705, 985, 1212
DpnI GATC 4 cut(s) 27, 114, 1111, 1187
DpnII GATC 4 cut(s) 25, 112, 1109, 1185
DraI TTTAAA 1 cut(s) 697
Eam1104I CTCTTC 3 cut(s) 53, 115, 513
EarI CTCTTC 3 cut(s) 53, 115, 513
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 786, 842
Eco24I GRGCYC 2 cut(s) 334, 871
Eco31I GGTCTC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 965
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 406, 1107
EcoICRI GAGCTC 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 1024
EcoRII CCWGG 2 cut(s) 489, 1129
EcoT14I CCWWGG 2 cut(s) 786, 842
EcoT38I GRGCYC 2 cut(s) 334, 871
ErhI CCWWGG 2 cut(s) 786, 842
FaeI CATG 8 cut(s) 32, 172, 652, 790, 821, 846, 1197, 1301
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 132, 164
FaqI GGGAC 2 cut(s) 828, 978
FatI CATG 8 cut(s) 28, 168, 648, 786, 817, 842, 1193, 1297
Fnu4HI GCNGC 7 cut(s) 39, 213, 312, 315, 405, 1083, 1218
FokI GGATG 5 cut(s) 722, 825, 1219, 1265, 1295
FriOI GRGCYC 2 cut(s) 334, 871
Fsp4HI GCNGC 7 cut(s) 39, 213, 312, 315, 405, 1083, 1218
FspBI CTAG 2 cut(s) 101, 1229
FspI TGCGCA 1 cut(s) 1221
GlaI GCGC 1 cut(s) 1221
GluI GCNGC 7 cut(s) 39, 213, 312, 315, 405, 1083, 1218
HapII CCGG 2 cut(s) 812, 1274
HhaI GCGC 1 cut(s) 1222
Hin1II CATG 8 cut(s) 32, 172, 652, 790, 821, 846, 1197, 1301
Hin6I GCGC 1 cut(s) 1220
HinP1I GCGC 1 cut(s) 1220
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 2 cut(s) 656, 1114
HinfI GANTC 5 cut(s) 45, 123, 426, 537, 1136
HpaII CCGG 2 cut(s) 812, 1274
HphI GGTGA 1 cut(s) 1145
Hpy166II GTNNAC 2 cut(s) 300, 1124
Hpy188I TCNGA 6 cut(s) 425, 566, 636, 706, 925, 988
Hpy188III TCNNGA 6 cut(s) 354, 512, 541, 740, 941, 1280
Hpy8I GTNNAC 2 cut(s) 300, 1124
Hpy99I CGWCG 1 cut(s) 736
HpyAV CCTTC 5 cut(s) 191, 356, 436, 1000, 1151
HpyCH4III ACNGT 2 cut(s) 235, 304
HpyCH4IV ACGT 2 cut(s) 158, 764
HpyCH4V TGCA 5 cut(s) 41, 266, 407, 1067, 1163
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 797, 1064, 1217, 1238
HpyF3I CTNAG 3 cut(s) 705, 985, 1212
HpySE526I ACGT 2 cut(s) 158, 764
Hsp92II CATG 8 cut(s) 32, 172, 652, 790, 821, 846, 1197, 1301
HspAI GCGC 1 cut(s) 1220
Kzo9I GATC 4 cut(s) 25, 112, 1109, 1185
LmnI GCTCC 3 cut(s) 329, 622, 866
Lsp1109I GCAGC 7 cut(s) 25, 199, 298, 301, 391, 1069, 1204
LweI GCATC 3 cut(s) 14, 1069, 1241
MaeI CTAG 2 cut(s) 101, 1229
MaeII ACGT 2 cut(s) 158, 764
MaeIII GTNAC 4 cut(s) 412, 512, 1267, 1290
MalI GATC 4 cut(s) 27, 114, 1111, 1187
MboI GATC 4 cut(s) 25, 112, 1109, 1185
MboII GAAGA 8 cut(s) 40, 79, 132, 385, 412, 530, 791, 1100
MhlI GDGCHC 2 cut(s) 334, 871
MluCI AATT 6 cut(s) 251, 549, 664, 793, 894, 1206
MlyI GAGTC 2 cut(s) 39, 132
MmeI TCCRAC 1 cut(s) 844
MseI TTAA 7 cut(s) 33, 75, 92, 138, 696, 948, 1248
MslI CAYNNNNRTG 2 cut(s) 236, 1131
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 2 cut(s) 812, 1274
MspR9I CCNGG 4 cut(s) 491, 813, 1131, 1275
MvaI CCWGG 2 cut(s) 491, 1131
MwoI GCNNNNNNNGC 5 cut(s) 221, 797, 1064, 1217, 1238
NciI CCSGG 2 cut(s) 813, 1275
NcoI CCATGG 2 cut(s) 786, 842
NdeII GATC 4 cut(s) 25, 112, 1109, 1185
NheI GCTAGC 1 cut(s) 1228
NlaIII CATG 8 cut(s) 32, 172, 652, 790, 821, 846, 1197, 1301
NlaIV GGNNCC 3 cut(s) 810, 868, 966
NmuCI GTSAC 3 cut(s) 412, 512, 1290
NsbI TGCGCA 1 cut(s) 1221
NspI RCATGY 1 cut(s) 1197
OliI CACNNNNGTG 2 cut(s) 236, 1131
PciI ACATGT 1 cut(s) 1193
PfeI GAWTC 3 cut(s) 426, 537, 1136
PkrI GCNGC 7 cut(s) 40, 214, 313, 316, 406, 1084, 1219
PleI GAGTC 2 cut(s) 39, 131
PpsI GAGTC 2 cut(s) 39, 131
PscI ACATGT 1 cut(s) 1193
PsiI TTATAA 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 489, 1129
PspGI CCWGG 2 cut(s) 489, 1129
PspN4I GGNNCC 3 cut(s) 810, 868, 966
PspPI GGNCC 1 cut(s) 965
PstI CTGCAG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 1 cut(s) 1198
RsaNI GTAC 1 cut(s) 1197
RseI CAYNNNNRTG 2 cut(s) 236, 1131
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 7 cut(s) 33, 75, 92, 138, 696, 948, 1248
SatI GCNGC 7 cut(s) 39, 213, 312, 315, 405, 1083, 1218
Sau3AI GATC 4 cut(s) 25, 112, 1109, 1185
Sau96I GGNCC 1 cut(s) 965
SchI GAGTC 2 cut(s) 39, 132
ScrFI CCNGG 4 cut(s) 491, 813, 1131, 1275
SduI GDGCHC 2 cut(s) 334, 871
SfaNI GCATC 3 cut(s) 14, 1069, 1241
SfcI CTRYAG 2 cut(s) 39, 303
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 2 cut(s) 236, 1131
SmlI CTYRAG 2 cut(s) 740, 939
SmoI CTYRAG 2 cut(s) 740, 939
Sse9I AATT 6 cut(s) 251, 549, 664, 793, 894, 1206
SspI AATATT 1 cut(s) 471
SspMI CTAG 2 cut(s) 101, 1229
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 4 cut(s) 489, 811, 1129, 1273
StyI CCWWGG 2 cut(s) 786, 842
TaaI ACNGT 2 cut(s) 235, 304
TaiI ACGT 2 cut(s) 161, 767
TaqI TCGA 3 cut(s) 51, 337, 540
TaqII GACCGA 1 cut(s) 194
TasI AATT 6 cut(s) 251, 549, 664, 793, 894, 1206
TatI WGTACW 1 cut(s) 1196
TfiI GAWTC 3 cut(s) 426, 537, 1136
Tru1I TTAA 7 cut(s) 33, 75, 92, 138, 696, 948, 1248
Tru9I TTAA 7 cut(s) 33, 75, 92, 138, 696, 948, 1248
TscAI CASTG 3 cut(s) 238, 781, 1170
TseFI GTSAC 3 cut(s) 412, 512, 1290
TseI GCWGC 7 cut(s) 38, 212, 311, 314, 404, 1082, 1217
Tsp45I GTSAC 3 cut(s) 412, 512, 1290
TspDTI ATGAA 7 cut(s) 119, 375, 418, 455, 586, 702, 1068
TspRI CASTG 3 cut(s) 238, 781, 1170
VpaK11BI GGWCC 1 cut(s) 965
XagI CCTNNNNNAGG 1 cut(s) 1024
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 1197
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XspI CTAG 2 cut(s) 101, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.