Rh5AG317800

aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
46763916 .. 46767550
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG317800.1

Sequence Viewer

Length: 1431 bp
ATGACTTCTGCAGATTTTGATGATTTGGAGAACGGAAGCTGCGGCAAAGGGCCTTGCGGCCGTGTGCTTCGGTGGCTGAAGGCGGTGTTGGCCAAGTCGTGGGGTAAGGTAGTGGAGGCAGCGAGGGAGGGGAAGAAGCTCGCAGAGGATGATCCGAGAAGGATTGTGCATTCGTTCAAAGTAGGGTTGGCTCTGACGTTGGTTTGTCTATTTTATTACTATCGACCGCTTTATGATGGCTTTGGTGTCGATGCAATGTGGGCGGTCTTGACCGTGGCCCTTGTCTTTGAGTACTCGGTTGGAGGAACCCTAGAAAGGGGTATAAATAGGATGATGGCAACGTTACTAGCTGGTGCTCTAGCTGTTGGAGTTCATCACATATCAACTCTTTGGGGTGGAAAAGTCGGGGAGCCCATATTGATGGCATTTTCCGTCTTTGTTGTAGCTGCAATTATGACCTTCCTGAGATTCTTCCCCGTGTTAAAGGCAAGGCATGACTATGGGCTGATGGTATTCATACTGACCTTCTGCTTGGTTTCGGTATCCGGCTACAAAGACGAACAGGTACTAGACATGGCACACAGGAGGCTCTCAACGGTTGCTATAGGAGGCTGCACTACTATTATAGTTTGTATCTGCATTTGCCCTGTGTGGATTGGAGTTGATCTCCATAATTTAATTGCTGGTAACATGGAAAAGCTTGGGGATTTTATGGAAGGATTTGGATTTGAATACTTTGGCATAACAGAGAATGGGTTGAAATTAAGTGATACTAAATCTTCGCTTCAGCGATATAAAAGTGTTCTTACATCAAAAGGCCTTGAAGAATTTATGGCTAACTTGGCACGATGGGAACCAGGTCATGGCGGGTTCAAGTTCTGTCACCCATGGGAGAAGTACTTGAATGTTGGAACCCAAAGTCGGCAGTGTGCCTATAAAATTGAAGCTCTTAACACTTACCTGAACACTGAAATTCAAGCGCCCGCTGAAATTCGAAGCAAAATTCAAGAACCATGCACAAATATTTGCAATGAATGCGGAAAGGCTTTGAAGGAATTAGCTGCAGCACTCAAGAAAATGACTCTGTCATCATCAGCTGATCAACACATCGCATACTCAAAAGCAGCAGCTGAGAGCCTCGACTCGTTACTCGAAAGTGGCATATGGGAAGATGCTAATGTGCTAGAAACAATACCATCTGCTGCGGTGGCGTTGCTTCTTATTGATGTTGTAGCTTGTGTAGAGAAGATTTCGGAAGCAGTTCATGAACTAGCATCCGCTGCAGACTTCAAGACTGAACAACCACAACGACTTCAGGAGCCAGTGCTTTATGAAAAATCACATGTTGCTATTACAATTGATCATAATTCAACTGAGGGGCTACCAGAAAATGGAAGTTCAAATGGCATCACTACTAATTATAATGTTTAA

Protein Analysis

476

Amino Acids

52.21

Weight (kDa)

5.8

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 46 - 387 8e-138 Aluminium activated malate transporter
FUSC_2 PF13515 84 - 210 4.6e-11 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis pycom03g10930 pycom11g14730
rosa_chinensis RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1422
AccB7I CCANNNNNTGG 3 cut(s) 99, 863, 1391
AclI AACGTT 1 cut(s) 341
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 58, 90
AcsI RAATTY 4 cut(s) 827, 972, 990, 1002
AcuI CTGAAG 3 cut(s) 98, 770, 1298
AfaI GTAC 3 cut(s) 293, 567, 899
AfiI CCNNNNNNNGG 6 cut(s) 99, 315, 316, 863, 921, 1391
AflIII ACRYGT 1 cut(s) 1342
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
Alw21I GWGCWC 1 cut(s) 358
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 1130
AoxI GGCC 5 cut(s) 50, 58, 90, 276, 817
ApoI RAATTY 4 cut(s) 827, 972, 990, 1002
Asp700I GAANNNNTTC 1 cut(s) 1260
AspLEI GCGC 1 cut(s) 982
AspS9I GGNCC 2 cut(s) 50, 277
AsuHPI GGTGA 1 cut(s) 875
AsuII TTCGAA 1 cut(s) 994
BalI TGGCCA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 358
BccI CCATC 6 cut(s) 230, 328, 415, 502, 843, 1204
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 858
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 2 cut(s) 1099, 1360
BfaI CTAG 6 cut(s) 311, 347, 359, 569, 1184, 1271
BfmI CTRYAG 4 cut(s) 9, 603, 1062, 1281
BfoI RGCGCY 1 cut(s) 983
BfuI GTATCC 1 cut(s) 553
BmcAI AGTACT 2 cut(s) 293, 899
Bme1390I CCNGG 1 cut(s) 858
BmgT120I GGNCC 2 cut(s) 50, 277
BmiI GGNNCC 5 cut(s) 307, 411, 855, 913, 1320
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 4 cut(s) 241, 1162, 1283, 1416
BplI GAGNNNNNCTC 2 cut(s) 651, 683
Bpu14I TTCGAA 1 cut(s) 994
BpuEI CTTGAG 1 cut(s) 1055
BsaJI CCNNGG 2 cut(s) 273, 887
Bsc4I CCNNNNNNNGG 6 cut(s) 99, 315, 316, 863, 921, 1391
Bse1I ACTGG 1 cut(s) 1322
Bse3DI GCAATG 2 cut(s) 261, 1036
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 2 cut(s) 273, 887
BseGI GGATG 3 cut(s) 154, 336, 1274
BseLI CCNNNNNNNGG 6 cut(s) 99, 315, 316, 863, 921, 1391
BseMI GCAATG 2 cut(s) 261, 1036
BseMII CTCAG 3 cut(s) 455, 1122, 1365
BseNI ACTGG 1 cut(s) 1322
BseX3I CGGCCG 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 598
Bsh1285I CGRYCG 2 cut(s) 61, 227
BshFI GGCC 5 cut(s) 52, 60, 92, 278, 819
BsiEI CGRYCG 2 cut(s) 61, 227
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 546
BslI CCNNNNNNNGG 6 cut(s) 99, 315, 316, 863, 921, 1391
BsmI GAATGC 2 cut(s) 169, 1040
BsnI GGCC 5 cut(s) 52, 60, 92, 278, 819
Bsp119I TTCGAA 1 cut(s) 994
Bsp1286I GDGCHC 2 cut(s) 358, 414
Bsp143I GATC 4 cut(s) 151, 664, 1099, 1360
Bsp19I CCATGG 1 cut(s) 887
BspANI GGCC 5 cut(s) 52, 60, 92, 278, 819
BspCNI CTCAG 3 cut(s) 456, 1123, 1366
BspHI TCATGA 1 cut(s) 1264
BspLI GGNNCC 5 cut(s) 307, 411, 855, 913, 1320
BspMAI CTGCAG 3 cut(s) 13, 1066, 1285
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 994
BsrDI GCAATG 2 cut(s) 261, 1036
BsrI ACTGG 1 cut(s) 1322
BssECI CCNNGG 2 cut(s) 273, 887
BssMI GATC 4 cut(s) 151, 664, 1099, 1360
BssT1I CCWWGG 1 cut(s) 887
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 274, 598
BstAPI GCANNNNNTGC 2 cut(s) 1035, 1280
BstBI TTCGAA 1 cut(s) 994
BstC8I GCNNGC 2 cut(s) 141, 984
BstDEI CTNAG 3 cut(s) 464, 1131, 1374
BstDSI CCRYGG 2 cut(s) 273, 887
BstF5I GGATG 3 cut(s) 154, 336, 1274
BstH2I RGCGCY 1 cut(s) 983
BstHHI GCGC 1 cut(s) 982
BstKTI GATC 4 cut(s) 154, 667, 1102, 1363
BstMBI GATC 4 cut(s) 151, 664, 1099, 1360
BstMCI CGRYCG 2 cut(s) 61, 227
BstMWI GCNNNNNNNGC 7 cut(s) 73, 89, 260, 842, 1035, 1208, 1280
BstNI CCWGG 1 cut(s) 858
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 1 cut(s) 856
BstSFI CTRYAG 4 cut(s) 9, 603, 1062, 1281
BstXI CCANNNNNNTGG 1 cut(s) 421
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 5 cut(s) 52, 60, 92, 278, 819
BtgI CCRYGG 2 cut(s) 273, 887
BtgZI GCGATG 1 cut(s) 1093
BtsCI GGATG 3 cut(s) 154, 336, 1274
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 3 cut(s) 932, 966, 1329
Cac8I GCNNGC 2 cut(s) 141, 984
CaiI CAGNNNCTG 1 cut(s) 1130
CciI TCATGA 1 cut(s) 1264
CfoI GCGC 1 cut(s) 982
Cfr13I GGNCC 2 cut(s) 50, 277
CsiI ACCWGGT 1 cut(s) 856
Csp6I GTAC 3 cut(s) 292, 566, 898
CviAII CATG 8 cut(s) 494, 574, 691, 863, 888, 1014, 1265, 1343
CviQI GTAC 3 cut(s) 292, 566, 898
DdeI CTNAG 3 cut(s) 464, 1131, 1374
DpnI GATC 4 cut(s) 153, 666, 1101, 1362
DpnII GATC 4 cut(s) 151, 664, 1099, 1360
EaeI YGGCCR 2 cut(s) 58, 90
EagI CGGCCG 1 cut(s) 58
EclXI CGGCCG 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 887
Eco147I AGGCCT 1 cut(s) 819
Eco24I GRGCYC 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 58
Eco57I CTGAAG 3 cut(s) 98, 770, 1298
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 887
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 887
FaeI CATG 8 cut(s) 497, 577, 694, 866, 891, 1017, 1268, 1346
FatI CATG 8 cut(s) 493, 573, 690, 862, 887, 1013, 1264, 1342
FauI CCCGC 2 cut(s) 860, 991
FauNDI CATATG 1 cut(s) 1163
FbaI TGATCA 2 cut(s) 1099, 1360
FokI GGATG 3 cut(s) 161, 343, 1261
FriOI GRGCYC 1 cut(s) 414
FspBI CTAG 6 cut(s) 311, 347, 359, 569, 1184, 1271
GlaI GCGC 1 cut(s) 981
HaeII RGCGCY 1 cut(s) 983
HaeIII GGCC 5 cut(s) 52, 60, 92, 278, 819
HapII CCGG 1 cut(s) 546
HhaI GCGC 1 cut(s) 982
Hin1II CATG 8 cut(s) 497, 577, 694, 866, 891, 1017, 1268, 1346
Hin6I GCGC 1 cut(s) 980
HinP1I GCGC 1 cut(s) 980
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 3 cut(s) 468, 1081, 1142
HpaII CCGG 1 cut(s) 546
HphI GGTGA 1 cut(s) 875
Hpy188I TCNGA 3 cut(s) 156, 195, 1255
Hpy188III TCNNGA 7 cut(s) 268, 463, 1007, 1072, 1265, 1291, 1316
HpyAV CCTTC 6 cut(s) 73, 153, 469, 535, 710, 1045
HpyCH4III ACNGT 2 cut(s) 274, 598
HpyCH4IV ACGT 2 cut(s) 197, 341
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 89, 260, 842, 1035, 1208, 1280
HpyF3I CTNAG 3 cut(s) 464, 1131, 1374
HpySE526I ACGT 2 cut(s) 197, 341
Hsp92II CATG 8 cut(s) 497, 577, 694, 866, 891, 1017, 1268, 1346
HspAI GCGC 1 cut(s) 980
Ksp22I TGATCA 2 cut(s) 1099, 1360
Kzo9I GATC 4 cut(s) 151, 664, 1099, 1360
LmnI GCTCC 2 cut(s) 409, 1318
LweI GCATC 4 cut(s) 241, 1162, 1283, 1416
MabI ACCWGGT 1 cut(s) 856
MaeI CTAG 6 cut(s) 311, 347, 359, 569, 1184, 1271
MaeII ACGT 2 cut(s) 197, 341
MaeIII GTNAC 4 cut(s) 342, 686, 881, 1146
MalI GATC 4 cut(s) 153, 666, 1101, 1362
MboI GATC 4 cut(s) 151, 664, 1099, 1360
MboII GAAGA 6 cut(s) 145, 463, 771, 836, 1181, 1258
MfeI CAATTG 1 cut(s) 1356
MhlI GDGCHC 2 cut(s) 358, 414
MlsI TGGCCA 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 2 cut(s) 1075, 1136
MmeI TCCRAC 3 cut(s) 280, 346, 889
MnlI CCTC 9 cut(s) 109, 117, 121, 139, 296, 579, 602, 1148, 1369
Mox20I TGGCCA 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 1260
MscI TGGCCA 1 cut(s) 92
MseI TTAA 5 cut(s) 482, 677, 764, 951, 1429
MslI CAYNNNNRTG 2 cut(s) 419, 498
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 4 cut(s) 986, 1097, 1130, 1280
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 1 cut(s) 858
MunI CAATTG 1 cut(s) 1356
Mva1269I GAATGC 2 cut(s) 169, 1040
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 7 cut(s) 73, 89, 260, 842, 1035, 1208, 1280
NcoI CCATGG 1 cut(s) 887
NdeI CATATG 1 cut(s) 1163
NdeII GATC 4 cut(s) 151, 664, 1099, 1360
NlaIII CATG 8 cut(s) 497, 577, 694, 866, 891, 1017, 1268, 1346
NlaIV GGNNCC 5 cut(s) 307, 411, 855, 913, 1320
NmuCI GTSAC 1 cut(s) 881
NspI RCATGY 1 cut(s) 1346
NspV TTCGAA 1 cut(s) 994
PagI TCATGA 1 cut(s) 1264
PceI AGGCCT 1 cut(s) 819
PciI ACATGT 1 cut(s) 1342
PctI GAATGC 2 cut(s) 169, 1040
PdmI GAANNNNTTC 1 cut(s) 1260
PfeI GAWTC 1 cut(s) 468
PflFI GACNNNGTC 1 cut(s) 1084
PflMI CCANNNNNTGG 3 cut(s) 99, 863, 1391
PleI GAGTC 2 cut(s) 1075, 1136
PpsI GAGTC 2 cut(s) 1075, 1136
PscI ACATGT 1 cut(s) 1342
PsiI TTATAA 1 cut(s) 1422
Psp1406I AACGTT 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 5 cut(s) 307, 411, 855, 913, 1320
PspPI GGNCC 2 cut(s) 50, 277
PstI CTGCAG 3 cut(s) 13, 1066, 1285
PstNI CAGNNNCTG 1 cut(s) 1130
PsyI GACNNNGTC 1 cut(s) 1084
PvuII CAGCTG 2 cut(s) 1097, 1130
RsaI GTAC 3 cut(s) 293, 567, 899
RsaNI GTAC 3 cut(s) 292, 566, 898
RseI CAYNNNNRTG 2 cut(s) 419, 498
SaqAI TTAA 5 cut(s) 482, 677, 764, 951, 1429
Sau3AI GATC 4 cut(s) 151, 664, 1099, 1360
Sau96I GGNCC 2 cut(s) 50, 277
ScaI AGTACT 2 cut(s) 293, 899
SchI GAGTC 2 cut(s) 1075, 1136
ScrFI CCNGG 1 cut(s) 858
SduI GDGCHC 2 cut(s) 358, 414
SexAI ACCWGGT 1 cut(s) 856
SfaNI GCATC 4 cut(s) 241, 1162, 1283, 1416
SfcI CTRYAG 4 cut(s) 9, 603, 1062, 1281
SfuI TTCGAA 1 cut(s) 994
SmiMI CAYNNNNRTG 2 cut(s) 419, 498
SmlI CTYRAG 1 cut(s) 1070
SmoI CTYRAG 1 cut(s) 1070
SseBI AGGCCT 1 cut(s) 819
SspI AATATT 1 cut(s) 1024
SspMI CTAG 6 cut(s) 311, 347, 359, 569, 1184, 1271
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 2 cut(s) 274, 598
TaiI ACGT 2 cut(s) 200, 344
TaqI TCGA 5 cut(s) 223, 249, 994, 1140, 1152
TatI WGTACW 2 cut(s) 291, 897
TauI GCSGC 2 cut(s) 45, 60
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 5 cut(s) 482, 677, 764, 951, 1429
Tru9I TTAA 5 cut(s) 482, 677, 764, 951, 1429
TscAI CASTG 3 cut(s) 932, 973, 1329
TseFI GTSAC 1 cut(s) 881
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 6 cut(s) 362, 505, 1047, 1253, 1281, 1347
TspGWI ACGGA 2 cut(s) 48, 421
TspRI CASTG 3 cut(s) 932, 973, 1329
Tth111I GACNNNGTC 1 cut(s) 1084
Van91I CCANNNNNTGG 3 cut(s) 99, 863, 1391
XapI RAATTY 4 cut(s) 827, 972, 990, 1002
XceI RCATGY 1 cut(s) 1346
XmnI GAANNNNTTC 1 cut(s) 1260
XspI CTAG 6 cut(s) 311, 347, 359, 569, 1184, 1271
ZrmI AGTACT 2 cut(s) 293, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.