Rh5CG354300

Aluminum-activated malate transporter 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000374
Physical Location & Seq
Forward (+)
41278123 .. 41279506
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG354300.1

Sequence Viewer

Length: 960 bp
ATGGCATCTCAAGTAGCAGGTGTTAAGAATACCAATGAGGATGAAAATGCTCGCAAAGATCTTGGTTTTTGTGGAAGGGTGAAGAACAAGGTTGTCGAGTTTCCGATGAAGTTAAAGAAGCTAGGGCAAGATGATCCGAGAAGGATTGTTCATTCTCTCAAAGTAGGACTAGCAGTTCTCTTGGTGTCATTACTCTATTACTTTGATCCTCTCTATGATGGCCTCGGTGCCACTGCTATGTGGGCTGTTTTAACTGTTGTAGTTGTTTTCGAATTTTCCGTAGGAGCAACACTTGGAAGAGGTTTGAACAGGATTTTGGCAACATTCCTCGCAGGTTCTCTAGGATTTGGTGTTCATCATTTGGCAAATCTTTCAGGAGAAAAAGGTCATCCAATACTCATTGGTCTTTTCGTCTTTATACTAGCTGCATCAGTGACATTTTTCCGCTTCTTTCCCTGGATTAAGGCAAGATATGATTATGGACTCCTGATTTTTATCTTGACATTTTGTATGATATCCGTATCCGGATACAGAGATGAAGAGATACTAGAGATGGCACACAAGAGGGCGTCCACAATCCTTATAGGTGCCTTTACAGCTGTGTCTGTGTGTGTTTTCATTTGCCCGGTGTGGGCTGGTGATGACCTGCACAACTCGGTTGCTACCAACATCGAAAAGCTTGGGAGCTTCTTGGAAGGGTTTGGGAGTGAATGCTTCAAAAAATCTTGCAAGGGAGGAGAGTCTAACAAGGCACTTCTAAAAGGATATTGCAGTGTTCTCAACTCGAAACAGAGTGAAGAAAGTCAGGTTAATTTTGCTAGGTGGGAGCCTAGACATGGTCGGTTTAGGTTCCGCCATCCTTGGAAACACTATCTGAAGATCGGAAGCCTTACCCGACAATGTGCCTACCGGATTGATACTCTTAATGGCTACATTAACTCCGAAATCCAGGTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ALMT

Protein Analysis

319

Amino Acids

35.63

Weight (kDa)

9.19

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 40 - 318 5.9e-131 Aluminium activated malate transporter
FUSC_2 PF13515 77 - 202 8.8e-11 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis pycom03g10930 pycom11g14730
rosa_chinensis RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 8
Acc36I ACCTGC 3 cut(s) 8, 323, 654
AccB1I GGYRCC 2 cut(s) 227, 587
AccI GTMKAC 1 cut(s) 954
AccIII TCCGGA 1 cut(s) 524
AciI CCGC 2 cut(s) 445, 853
AclWI GGATC 2 cut(s) 128, 200
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 569
AfiI CCNNNNNNNGG 2 cut(s) 631, 836
AgsI TTSAA 2 cut(s) 307, 718
AjnI CCWGG 2 cut(s) 455, 948
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AloI GAACNNNNNNTCC 4 cut(s) 159, 191, 336, 368
AluBI AGCT 5 cut(s) 121, 425, 599, 679, 687
AluI AGCT 5 cut(s) 121, 425, 599, 679, 687
AlwI GGATC 2 cut(s) 128, 200
Aor13HI TCCGGA 1 cut(s) 524
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 2 cut(s) 91, 650
AsuII TTCGAA 1 cut(s) 270
BanI GGYRCC 2 cut(s) 227, 587
BbvI GCAGC 1 cut(s) 412
BccI CCATC 3 cut(s) 212, 547, 864
BciT130I CCWGG 2 cut(s) 457, 950
BciVI GTATCC 2 cut(s) 521, 532
BcnI CCSGG 1 cut(s) 626
BfaI CTAG 7 cut(s) 122, 170, 341, 422, 548, 819, 831
BfuAI ACCTGC 3 cut(s) 8, 323, 654
BfuI GTATCC 2 cut(s) 521, 532
BglII AGATCT 1 cut(s) 58
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 3 cut(s) 457, 626, 950
BmiI GGNNCC 4 cut(s) 229, 589, 828, 851
BmrFI CCNGG 3 cut(s) 457, 626, 950
BmsI GCATC 2 cut(s) 14, 437
Bpu14I TTCGAA 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 3 cut(s) 223, 455, 860
BsaWI WCCGGW 2 cut(s) 524, 909
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 836
Bse8I GATNNNNATC 1 cut(s) 494
BseAI TCCGGA 1 cut(s) 524
BseBI CCWGG 2 cut(s) 457, 950
BseDI CCNNGG 3 cut(s) 223, 455, 860
BseGI GGATG 3 cut(s) 46, 388, 856
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 631, 836
BseRI GAGGAG 1 cut(s) 750
BseXI GCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 2 cut(s) 227, 587
BsiSI CCGG 3 cut(s) 525, 626, 910
BslI CCNNNNNNNGG 2 cut(s) 631, 836
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 1 cut(s) 222
Bsp119I TTCGAA 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 524
Bsp143I GATC 4 cut(s) 58, 133, 205, 879
BspACI CCGC 2 cut(s) 445, 853
BspANI GGCC 1 cut(s) 222
BspEI TCCGGA 1 cut(s) 524
BspLI GGNNCC 4 cut(s) 229, 589, 828, 851
BspMI ACCTGC 3 cut(s) 8, 323, 654
BspPI GGATC 2 cut(s) 128, 200
BspT104I TTCGAA 1 cut(s) 270
BspT107I GGYRCC 2 cut(s) 227, 587
BssECI CCNNGG 3 cut(s) 223, 455, 860
BssMI GATC 4 cut(s) 58, 133, 205, 879
BssNAI GTATAC 1 cut(s) 955
BssNI GRCGYC 1 cut(s) 569
BssT1I CCWWGG 1 cut(s) 860
Bst1107I GTATAC 1 cut(s) 955
Bst2UI CCWGG 2 cut(s) 457, 950
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 292, 534
BstACI GRCGYC 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 3 cut(s) 46, 388, 856
BstKTI GATC 4 cut(s) 61, 136, 208, 882
BstMBI GATC 4 cut(s) 58, 133, 205, 879
BstMWI GCNNNNNNNGC 2 cut(s) 242, 596
BstNI CCWGG 2 cut(s) 457, 950
BstSCI CCNGG 3 cut(s) 455, 624, 948
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BstZ17I GTATAC 1 cut(s) 955
BsuI GTATCC 2 cut(s) 521, 532
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 3 cut(s) 46, 388, 856
BtsI GCAGTG 2 cut(s) 231, 778
BtsIMutI CAGTG 3 cut(s) 231, 438, 778
BveI ACCTGC 3 cut(s) 8, 323, 654
Cac8I GCNNGC 1 cut(s) 52
CseI GACGC 1 cut(s) 558
CviAII CATG 1 cut(s) 836
DpnI GATC 4 cut(s) 60, 135, 207, 881
DpnII GATC 4 cut(s) 58, 133, 205, 879
Eam1104I CTCTTC 2 cut(s) 292, 534
EarI CTCTTC 2 cut(s) 292, 534
EciI GGCGGA 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 860
Eco32I GATATC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 455, 948
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 860
ErhI CCWWGG 1 cut(s) 860
FaeI CATG 1 cut(s) 839
FaiI YATR 9 cut(s) 216, 239, 419, 474, 480, 512, 584, 837, 955
FatI CATG 1 cut(s) 835
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 3 cut(s) 53, 375, 843
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 7 cut(s) 122, 170, 341, 422, 548, 819, 831
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 222
HapII CCGG 3 cut(s) 525, 626, 910
HgaI GACGC 1 cut(s) 558
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 1 cut(s) 839
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 2 cut(s) 483, 740
HpaII CCGG 3 cut(s) 525, 626, 910
HphI GGTGA 2 cut(s) 91, 650
Hpy166II GTNNAC 2 cut(s) 573, 955
Hpy188I TCNGA 5 cut(s) 105, 138, 876, 884, 943
Hpy188III TCNNGA 4 cut(s) 375, 487, 499, 525
Hpy8I GTNNAC 2 cut(s) 573, 955
HpyAV CCTTC 3 cut(s) 69, 135, 689
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 428, 649, 729, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 596
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 1 cut(s) 839
Kpn2I TCCGGA 1 cut(s) 524
Kzo9I GATC 4 cut(s) 58, 133, 205, 879
LmnI GCTCC 3 cut(s) 284, 684, 826
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 2 cut(s) 14, 437
MaeI CTAG 7 cut(s) 122, 170, 341, 422, 548, 819, 831
MaeIII GTNAC 1 cut(s) 433
MalI GATC 4 cut(s) 60, 135, 207, 881
MboI GATC 4 cut(s) 58, 133, 205, 879
MboII GAAGA 5 cut(s) 94, 309, 551, 809, 889
MflI RGATCY 1 cut(s) 58
MluCI AATT 2 cut(s) 272, 811
MlyI GAGTC 2 cut(s) 477, 749
MnlI CCTC 7 cut(s) 31, 219, 233, 293, 338, 558, 728
MroI TCCGGA 1 cut(s) 524
MseI TTAA 7 cut(s) 24, 113, 251, 462, 810, 924, 936
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 3 cut(s) 525, 626, 910
MspR9I CCNGG 3 cut(s) 457, 626, 950
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 457, 950
MwoI GCNNNNNNNGC 2 cut(s) 242, 596
NciI CCSGG 1 cut(s) 626
NdeII GATC 4 cut(s) 58, 133, 205, 879
NlaIII CATG 1 cut(s) 839
NlaIV GGNNCC 4 cut(s) 229, 589, 828, 851
NmuCI GTSAC 1 cut(s) 433
NspV TTCGAA 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 716
PflFI GACNNNGTC 1 cut(s) 837
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 477, 748
PpsI GAGTC 2 cut(s) 477, 748
Psp6I CCWGG 2 cut(s) 455, 948
PspGI CCWGG 2 cut(s) 455, 948
PspN4I GGNNCC 4 cut(s) 229, 589, 828, 851
PsuI RGATCY 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 837
PvuII CAGCTG 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 7 cut(s) 24, 113, 251, 462, 810, 924, 936
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 4 cut(s) 58, 133, 205, 879
SchI GAGTC 2 cut(s) 477, 749
ScrFI CCNGG 3 cut(s) 457, 626, 950
SfaNI GCATC 2 cut(s) 14, 437
SfuI TTCGAA 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 272, 811
SsiI CCGC 2 cut(s) 445, 853
SspMI CTAG 7 cut(s) 122, 170, 341, 422, 548, 819, 831
StyD4I CCNGG 3 cut(s) 455, 624, 948
StyI CCWWGG 1 cut(s) 860
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 4 cut(s) 96, 270, 672, 785
TasI AATT 2 cut(s) 272, 811
Tru1I TTAA 7 cut(s) 24, 113, 251, 462, 810, 924, 936
Tru9I TTAA 7 cut(s) 24, 113, 251, 462, 810, 924, 936
TscAI CASTG 3 cut(s) 238, 438, 778
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 6 cut(s) 57, 122, 140, 344, 552, 607
TspGWI ACGGA 2 cut(s) 268, 508
TspRI CASTG 3 cut(s) 238, 438, 778
Tth111I GACNNNGTC 1 cut(s) 837
XapI RAATTY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 954
XspI CTAG 7 cut(s) 122, 170, 341, 422, 548, 819, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.