Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000398.1

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Forward (+)

13190 .. 13582

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000398.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgacttctgcagattttgatgatttggagaacggaagctgcggcaaagggccttgcggccgtatgcttcggtggctgaaggcggtgttggccaagtcgtggggtaaggtagtggaggcagcgagggaggggaagaagctcgcagaggatgatccgagaaggattgtgcattcgttcaaagtagggttggctctgacgttggtttgtctattttattactatcgaccgctttatgatggctttggtgtcgatgcaatgtgggcggtcttgaccgtggcccttgtctttgagtactcggttggtaagcattctgtacttttagagctcgctttcacgattaaaacgcatttgttcatagaaattaatagcccatgtattaaccctcttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

130

Amino Acids

14.51

Weight (kDa)

7.67

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	99
AciI	CCGC	5 cut(s)	42, 57, 83, 227, 263
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	2 cut(s)	58, 90
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	293, 315
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	3 cut(s)	39, 139, 325
AluI	AGCT	3 cut(s)	39, 139, 325
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	4 cut(s)	50, 58, 90, 276
ApeKI	GCWGC	2 cut(s)	39, 119
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	50, 277
BalI	TGGCCA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	26, 131
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	40, 43, 58, 120
BlsI	GCNGC	4 cut(s)	41, 44, 59, 121
BmcAI	AGTACT	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	50, 277
BmsI	GCATC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	261
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	26, 131
Bsh1285I	CGRYCG	2 cut(s)	61, 227
BshFI	GGCC	4 cut(s)	52, 60, 92, 278
BsiEI	CGRYCG	2 cut(s)	61, 227
BsiHKAI	GWGCWC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmI	GAATGC	2 cut(s)	169, 307
BsnI	GGCC	4 cut(s)	52, 60, 92, 278
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	5 cut(s)	42, 57, 83, 227, 263
BspANI	GGCC	4 cut(s)	52, 60, 92, 278
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	141, 327
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMCI	CGRYCG	2 cut(s)	61, 227
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 89, 260
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	26, 131
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	4 cut(s)	52, 60, 92, 278
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	141, 327
Cfr13I	GGNCC	2 cut(s)	50, 277
Csp6I	GTAC	2 cut(s)	292, 314
CviAII	CATG	1 cut(s)	372
CviQI	GTAC	2 cut(s)	292, 314
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EaeI	YGGCCR	2 cut(s)	58, 90
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	327
Eco52I	CGGCCG	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	1 cut(s)	375
FaiI	YATR	4 cut(s)	65, 234, 356, 373
FatI	CATG	1 cut(s)	371
Fnu4HI	GCNGC	4 cut(s)	40, 43, 58, 120
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	40, 43, 58, 120
GluI	GCNGC	4 cut(s)	40, 43, 58, 120
HaeIII	GGCC	4 cut(s)	52, 60, 92, 278
Hin1II	CATG	1 cut(s)	375
Hpy188I	TCNGA	2 cut(s)	156, 195
Hpy188III	TCNNGA	2 cut(s)	268, 334
HpyAV	CCTTC	2 cut(s)	73, 153
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	11, 169, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 89, 260
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	26, 131
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	197
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	145, 377
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	1 cut(s)	360
MluNI	TGGCCA	1 cut(s)	92
MnlI	CCTC	5 cut(s)	109, 117, 121, 139, 393
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	4 cut(s)	339, 363, 378, 391
Msp20I	TGGCCA	1 cut(s)	92
Mva1269I	GAATGC	2 cut(s)	169, 307
MwoI	GCNNNNNNNGC	3 cut(s)	73, 89, 260
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	375
PctI	GAATGC	2 cut(s)	169, 307
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	41, 44, 59, 121
PshBI	ATTAAT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	50, 277
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	2 cut(s)	293, 315
RsaNI	GTAC	2 cut(s)	292, 314
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	339, 363, 378, 391
SatI	GCNGC	4 cut(s)	40, 43, 58, 120
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	50, 277
ScaI	AGTACT	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	5 cut(s)	41, 111, 141, 200, 327
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	5 cut(s)	42, 57, 83, 227, 263
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	223, 249
TasI	AATT	1 cut(s)	360
TatI	WGTACW	2 cut(s)	291, 313
TauI	GCSGC	2 cut(s)	45, 60
Tru1I	TTAA	4 cut(s)	339, 363, 378, 391
Tru9I	TTAA	4 cut(s)	339, 363, 378, 391
TseI	GCWGC	2 cut(s)	39, 119
TspDTI	ATGAA	1 cut(s)	343
TspGWI	ACGGA	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	99
VspI	ATTAAT	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.