Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002563.1

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Reverse (-)

913 .. 1806

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002563.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggcatcttcaaataatgaccatgatcaggttaaagctgcaggactcttcgagaggctatgggggaagataattaagttcggcttgatgttaaaaaaactagggcaagatgatccaagaagaattgttcattctcttaaagtggcactagctcttacattggtctccatgttattctactttgaaccactgtatgaaggtttaggtcttgctgctatgtgggctattctgactgttgtggtcgtttttgaattttctgttggacgaggtttgaatagaatgatgtcaactgtagtagctgctgctcttggcattggagctcatcgattagcaactctgacaggaaatcaaggagagcctatacttattgctctctttgtcttcgtagaagctggaatagtgacattcttcagattcattccccaaatgaaggcaagatacgattatgggctgctgatattcaacgtgacgttctgcctggtatcggtgtctggatatcgcgacaaagaggtcatacaaatgggattcgaaagggtatgtaccatcaccattggaggctgtatcgctgttgctgtttgtgttttcattcgtccagtatggataggggtggagcttcacaatcggatttctaccaacatggaaaagctggccaatttcttagaaggtacatctgttttgctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

227

Amino Acids

25.11

Weight (kDa)

8.94

Isoelectric Point (pI)

16.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
AccII	CGCG	1 cut(s)	501
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	2 cut(s)	541, 667
AfiI	CCNNNNNNNGG	3 cut(s)	28, 430, 484
AgsI	TTSAA	5 cut(s)	12, 185, 251, 274, 463
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	7 cut(s)	38, 152, 299, 320, 392, 613, 646
AluI	AGCT	7 cut(s)	38, 152, 299, 320, 392, 613, 646
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	648
ApeKI	GCWGC	5 cut(s)	38, 212, 299, 302, 451
ApoI	RAATTY	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	538
AsuII	TTCGAA	1 cut(s)	528
BaeI	ACNNNNGTAYC	1 cut(s)	657
BalI	TGGCCA	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	322
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	5 cut(s)	25, 199, 286, 289, 438
BccI	CCATC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	101, 149
BfmI	CTRYAG	2 cut(s)	39, 291
BisI	GCNGC	5 cut(s)	39, 213, 300, 303, 452
BlsI	GCNGC	5 cut(s)	40, 214, 301, 304, 453
Bme1390I	CCNGG	1 cut(s)	479
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	373
Bpu14I	TTCGAA	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	325
BsaI	GGTCTC	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 430, 484
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	479
BseCI	ATCGAT	1 cut(s)	325
BseLI	CCNNNNNNNGG	3 cut(s)	28, 430, 484
BseNI	ACTGG	1 cut(s)	593
BseXI	GCAGC	5 cut(s)	25, 199, 286, 289, 438
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	650
BshVI	ATCGAT	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	28, 430, 484
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	650
Bso31I	GGTCTC	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	25, 112
Bsp68I	TCGCGA	1 cut(s)	501
BspANI	GGCC	1 cut(s)	650
BspDI	ATCGAT	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	501
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	593
BssMI	GATC	2 cut(s)	25, 112
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	192, 235, 292
Bst6I	CTCTTC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	2 cut(s)	28, 115
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	25, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	2 cut(s)	39, 291
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	5 cut(s)	25, 199, 286, 289, 438
BstV2I	GAAGAC	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	650
BsuTUI	ATCGAT	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	188
BtuMI	TCGCGA	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	648
ClaI	ATCGAT	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	540, 666
CviAII	CATG	3 cut(s)	23, 169, 637
CviQI	GTAC	2 cut(s)	540, 666
DdeI	CTNAG	1 cut(s)	658
DpnI	GATC	2 cut(s)	27, 114
DpnII	GATC	2 cut(s)	25, 112
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	322
FaeI	CATG	3 cut(s)	26, 172, 640
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	3 cut(s)	22, 168, 636
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	39, 213, 300, 303, 452
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	5 cut(s)	39, 213, 300, 303, 452
FspBI	CTAG	2 cut(s)	101, 149
GluI	GCNGC	5 cut(s)	39, 213, 300, 303, 452
HaeIII	GGCC	1 cut(s)	650
Hin1II	CATG	3 cut(s)	26, 172, 640
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	45, 414, 525
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	4 cut(s)	231, 339, 413, 624
Hpy188III	TCNNGA	3 cut(s)	52, 492, 500
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	191, 424, 656
HpyCH4III	ACNGT	3 cut(s)	192, 235, 292
HpyCH4IV	ACGT	2 cut(s)	465, 470
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	658
HpySE526I	ACGT	2 cut(s)	465, 470
Hsp92II	CATG	3 cut(s)	26, 172, 640
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 112
LmnI	GCTCC	2 cut(s)	317, 610
LpnPI	CCDG	9 cut(s)	14, 27, 327, 378, 464, 477, 491, 606, 632
Lsp1109I	GCAGC	5 cut(s)	25, 199, 286, 289, 438
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	101, 149
MaeII	ACGT	2 cut(s)	465, 470
MaeIII	GTNAC	2 cut(s)	400, 466
MalI	GATC	2 cut(s)	27, 114
MboI	GATC	2 cut(s)	25, 112
MboII	GAAGA	5 cut(s)	40, 79, 132, 373, 400
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	4 cut(s)	72, 123, 251, 652
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	48, 260, 502, 548
Mox20I	TGGCCA	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	4 cut(s)	33, 75, 92, 138
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	650
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	2 cut(s)	25, 112
NlaIII	CATG	3 cut(s)	26, 172, 640
NmuCI	GTSAC	2 cut(s)	400, 466
NruI	TCGCGA	1 cut(s)	501
NspV	TTCGAA	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	414, 525
PkrI	GCNGC	5 cut(s)	40, 214, 301, 304, 453
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	43
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	2 cut(s)	541, 667
RsaNI	GTAC	2 cut(s)	540, 666
RseI	CAYNNNNRTG	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	33, 75, 92, 138
SatI	GCNGC	5 cut(s)	39, 213, 300, 303, 452
Sau3AI	GATC	2 cut(s)	25, 112
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	39, 291
SfuI	TTCGAA	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	4 cut(s)	72, 123, 251, 652
SspMI	CTAG	2 cut(s)	101, 149
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	192, 235, 292
TaiI	ACGT	2 cut(s)	468, 473
TaqI	TCGA	3 cut(s)	51, 325, 528
TasI	AATT	4 cut(s)	72, 123, 251, 652
TfiI	GAWTC	2 cut(s)	414, 525
Tru1I	TTAA	4 cut(s)	33, 75, 92, 138
Tru9I	TTAA	4 cut(s)	33, 75, 92, 138
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	2 cut(s)	400, 466
TseI	GCWGC	5 cut(s)	38, 212, 299, 302, 451
Tsp45I	GTSAC	2 cut(s)	400, 466
TspDTI	ATGAA	5 cut(s)	119, 210, 406, 443, 574
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	2 cut(s)	101, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.