Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Reverse (-)

25016886 .. 25017426

Gene Structure 541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0237500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCTCTATTGGTTTCTGGCAGTTCTAGCAATTTGGTCAAGATTCTAAGTTGCCTACCTCATGTTCAGAGGCTCGATTTCTACTGTTGCTCCTTAATGTATCTGGCTATTGGTGCCTTGCCAAAGTTGTCCAGCTCTGCAAGAACTGAAAGTTCAGGTCTTCCCATGGGAAAGATTGTTGGAAAAGGGAATTCTTGGTTAGATGACAACAAGAGATGTTCATTCAACCAACTGCAATATGTGTTCGTAAACGCCATAAGAGATGTCAAAGCTGAGCTAGATTTCATCAGATATATGCTTTTGAATTCACCTGTGCTCGAGAGGATGACTATTCAGCCTGTTCCTGGTGTTGAGTCATCGAAACTAGAAAAGAAGTTGTTCCGGTCTAAAATCTGCTGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

134

Amino Acids

14.97

Weight (kDa)

9.26

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	73 - 111	5.1e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	190, 304
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	226, 304
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	135, 272, 277
AluI	AGCT	3 cut(s)	135, 272, 277
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	396
ApoI	RAATTY	2 cut(s)	190, 304
Asp700I	GAANNNNTTC	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	27, 278, 365
BisI	GCNGC	1 cut(s)	397
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	383
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	47, 273
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 113
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	330
CviAII	CATG	2 cut(s)	62, 166
CviJI	RGCY	6 cut(s)	73, 107, 135, 272, 277, 337
CviKI_1	RGCY	6 cut(s)	73, 107, 135, 272, 277, 337
DdeI	CTNAG	2 cut(s)	47, 273
Eco130I	CCWWGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	317
EcoRI	GAATTC	2 cut(s)	190, 304
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	65, 169
FaiI	YATR	6 cut(s)	63, 167, 240, 257, 294, 296
FatI	CATG	2 cut(s)	61, 165
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	3 cut(s)	27, 278, 365
GluI	GCNGC	1 cut(s)	397
HapII	CCGG	1 cut(s)	382
Hin1II	CATG	2 cut(s)	65, 169
HinfI	GANTC	2 cut(s)	43, 353
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	69, 290
Hpy188III	TCNNGA	2 cut(s)	40, 319
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	140, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 113
HpyF3I	CTNAG	2 cut(s)	47, 273
Hsp92II	CATG	2 cut(s)	65, 169
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	9 cut(s)	3, 89, 141, 145, 324, 330, 351, 357, 395
Lsp1109I	GCAGC	1 cut(s)	383
MaeI	CTAG	3 cut(s)	27, 278, 365
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	31, 190, 304
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	63, 69, 315
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	1 cut(s)	95
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	27, 113
NcoI	CCATGG	1 cut(s)	165
NlaIII	CATG	2 cut(s)	65, 169
NlaIV	GGNNCC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	61, 137, 160, 274, 279, 313
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	31, 190, 304
SspMI	CTAG	3 cut(s)	27, 278, 365
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	75, 318, 359
TasI	AATT	3 cut(s)	31, 190, 304
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseI	GCWGC	1 cut(s)	396
TspDTI	ATGAA	2 cut(s)	210, 274
XapI	RAATTY	2 cut(s)	190, 304
XhoI	CTCGAG	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	3 cut(s)	27, 278, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.