Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Forward (+)

46650158 .. 46652744

Gene Structure 2587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG317400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCATCTTCAAATAATGACCATGATCAGGTTAAAGCAGCAGGACTCTTCGAGAGGTTAAGGGGAAAGATAGTTAAGTTTGGCTTGATGTTAAAAAAACTAGGGCAAGATGATCCAAGAAGAATTGTTCATTCTCTTAAAGTGGCACTTGCTCTTACATTGATCTCCATGTTATTCTACTTTGAACCACTCTATGACGGTTTTGGTATAGCTGCTATGTGGGCTATTCTGACTGTTGTGGTCGTTTTTGAATTTACTGTTGGAGCGACAATAGGACGAGGTTTGAATAGAATAATGTCAACTGTAGTAGCTGCTGCTCTTGGCATTGGAGCTCATCGATTAGCAACTCTTTCGGGCAATCAAGGAGAGCCAATACTTATTGCTCTCTTTGTCTTCGTAGAAGCTGGAATAGTGACATTCTTCAGATTTATTCCCCAAATGAAGGCAAGATACGATTATGGGCTGCTGATATTCAACTTGACATTCTGCCTAATATCGGTGTCTGGCTATCGCGACGAGGAGGTTATACGATTAGGATTCGAGAGGGTATCTACCATCATCATTGGAAGTTGTACTGCAGTTACTGTTTGTGTTTTCATTCGTCCAGTATGGATTGGGGTGGAACTTCACAATCAGATTGCAACCAACATGGAAAAGCTTGCCAATTTCTTAGAAGAATTTGGAGATGAATACTTTACAGTATCTGAGAATGGCCAGATCAGAGACAAGTCATCTTCTCTTCAAGGATATAAAAGTGTTCTAACTTCAAAAGGCAGTGAAGACACCATGGCTAATTTGGCAAGATGGGAACCGGGCCATGGAAGGTTCAAGTTTCATCATCCATGGAAACAATACTTGAAAGTTGGAACCCTAAGTCGCCAATGTGCGTTCAAAATTGAAGCTCTCAACAACTACCTTACCTCTGAAACCCAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

312

Amino Acids

34.85

Weight (kDa)

8.81

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	33 - 311	5.1e-123	Aluminium activated malate transporter
FUSC_2	PF13515	72 - 195	6e-09	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	513
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	2 cut(s)	251, 677
AcuI	CTGAAG	1 cut(s)	406
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	4 cut(s)	28, 442, 496, 818
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	6 cut(s)	212, 311, 332, 404, 658, 902
AluI	AGCT	6 cut(s)	212, 311, 332, 404, 658, 902
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	2 cut(s)	584, 704
AoxI	GGCC	2 cut(s)	712, 814
ApeKI	GCWGC	5 cut(s)	38, 212, 311, 314, 463
ApoI	RAATTY	2 cut(s)	251, 677
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbsI	GAAGAC	2 cut(s)	385, 786
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	5 cut(s)	50, 199, 298, 301, 450
BccI	CCATC	2 cut(s)	563, 798
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	303, 576
BisI	GCNGC	5 cut(s)	39, 213, 312, 315, 464
BlsI	GCNGC	5 cut(s)	40, 214, 313, 316, 465
Bme1390I	CCNGG	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	2 cut(s)	810, 868
BmrFI	CCNGG	1 cut(s)	813
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	385, 786
BpuMI	CCSGG	1 cut(s)	813
Bsa29I	ATCGAT	1 cut(s)	337
BsaJI	CCNNGG	3 cut(s)	786, 817, 842
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 442, 496, 818
Bse1I	ACTGG	1 cut(s)	605
BseCI	ATCGAT	1 cut(s)	337
BseDI	CCNNGG	3 cut(s)	786, 817, 842
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	4 cut(s)	28, 442, 496, 818
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	5 cut(s)	50, 199, 298, 301, 450
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	714, 816
BshVI	ATCGAT	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	812
BslI	CCNNNNNNNGG	4 cut(s)	28, 442, 496, 818
BsmAI	GTCTC	1 cut(s)	717
BsnI	GGCC	2 cut(s)	714, 816
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	25, 112, 162, 717
Bsp19I	CCATGG	3 cut(s)	786, 817, 842
Bsp68I	TCGCGA	1 cut(s)	513
BspANI	GGCC	2 cut(s)	714, 816
BspCNI	CTCAG	1 cut(s)	697
BspDI	ATCGAT	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	2 cut(s)	810, 868
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	3 cut(s)	786, 817, 842
BssMI	GATC	4 cut(s)	25, 112, 162, 717
BssT1I	CCWWGG	3 cut(s)	786, 817, 842
Bst4CI	ACNGT	6 cut(s)	200, 235, 259, 304, 586, 700
Bst6I	CTCTTC	2 cut(s)	53, 744
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	3 cut(s)	670, 705, 872
BstDSI	CCRYGG	3 cut(s)	786, 817, 842
BstF5I	GGATG	1 cut(s)	838
BstFNI	CGCG	1 cut(s)	513
BstKTI	GATC	4 cut(s)	28, 115, 165, 720
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	4 cut(s)	25, 112, 162, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 797
BstSCI	CCNGG	1 cut(s)	811
BstSFI	CTRYAG	2 cut(s)	303, 576
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	5 cut(s)	50, 199, 298, 301, 450
BstV2I	GAAGAC	2 cut(s)	385, 786
Bsu15I	ATCGAT	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	714, 816
BsuTUI	ATCGAT	1 cut(s)	337
BtgI	CCRYGG	3 cut(s)	786, 817, 842
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	781
BtsIMutI	CAGTG	1 cut(s)	781
BtuMI	TCGCGA	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	660
CaiI	CAGNNNCTG	2 cut(s)	584, 704
Cfr13I	GGNCC	1 cut(s)	814
ClaI	ATCGAT	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	6 cut(s)	23, 169, 649, 787, 818, 843
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	3 cut(s)	670, 705, 872
DpnI	GATC	4 cut(s)	27, 114, 164, 719
DpnII	GATC	4 cut(s)	25, 112, 162, 717
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	2 cut(s)	53, 744
EarI	CTCTTC	2 cut(s)	53, 744
Ecl136II	GAGCTC	1 cut(s)	332
Eco130I	CCWWGG	3 cut(s)	786, 817, 842
Eco24I	GRGCYC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	332
EcoT14I	CCWWGG	3 cut(s)	786, 817, 842
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	3 cut(s)	786, 817, 842
FaeI	CATG	6 cut(s)	26, 172, 652, 790, 821, 846
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 132, 164
FatI	CATG	6 cut(s)	22, 168, 648, 786, 817, 842
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	39, 213, 312, 315, 464
FokI	GGATG	1 cut(s)	825
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	5 cut(s)	39, 213, 312, 315, 464
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	5 cut(s)	39, 213, 312, 315, 464
HaeIII	GGCC	2 cut(s)	714, 816
HapII	CCGG	1 cut(s)	812
Hin1II	CATG	6 cut(s)	26, 172, 652, 790, 821, 846
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	2 cut(s)	45, 537
HpaII	CCGG	1 cut(s)	812
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	6 cut(s)	231, 425, 636, 706, 722, 925
Hpy188III	TCNNGA	3 cut(s)	52, 512, 541
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	2 cut(s)	436, 816
HpyCH4III	ACNGT	6 cut(s)	200, 235, 259, 304, 586, 700
HpyCH4V	TGCA	2 cut(s)	578, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 797
HpyF3I	CTNAG	3 cut(s)	670, 705, 872
Hsp92II	CATG	6 cut(s)	26, 172, 652, 790, 821, 846
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	25, 112, 162, 717
LmnI	GCTCC	2 cut(s)	263, 329
LpnPI	CCDG	7 cut(s)	14, 27, 390, 489, 618, 728, 825
Lsp1109I	GCAGC	5 cut(s)	50, 199, 298, 301, 450
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	412, 580
MalI	GATC	4 cut(s)	27, 114, 164, 719
MboI	GATC	4 cut(s)	25, 112, 162, 717
MboII	GAAGA	8 cut(s)	40, 132, 385, 412, 686, 726, 731, 791
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	6 cut(s)	123, 251, 664, 677, 793, 894
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	2 cut(s)	241, 844
MnlI	CCTC	6 cut(s)	48, 272, 511, 514, 537, 931
Mox20I	TGGCCA	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	5 cut(s)	33, 59, 75, 92, 138
Msp20I	TGGCCA	1 cut(s)	714
MspI	CCGG	1 cut(s)	812
MspR9I	CCNGG	1 cut(s)	813
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	2 cut(s)	221, 797
NciI	CCSGG	1 cut(s)	813
NcoI	CCATGG	3 cut(s)	786, 817, 842
NdeII	GATC	4 cut(s)	25, 112, 162, 717
NlaIII	CATG	6 cut(s)	26, 172, 652, 790, 821, 846
NlaIV	GGNNCC	2 cut(s)	810, 868
NmuCI	GTSAC	1 cut(s)	412
NruI	TCGCGA	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	537
PkrI	GCNGC	5 cut(s)	40, 214, 313, 316, 465
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	810, 868
PspPI	GGNCC	1 cut(s)	814
PstI	CTGCAG	1 cut(s)	580
PstNI	CAGNNNCTG	2 cut(s)	584, 704
RruI	TCGCGA	1 cut(s)	513
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	334
SaqAI	TTAA	5 cut(s)	33, 59, 75, 92, 138
SatI	GCNGC	5 cut(s)	39, 213, 312, 315, 464
Sau3AI	GATC	4 cut(s)	25, 112, 162, 717
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	813
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	303, 576
Sse9I	AATT	6 cut(s)	123, 251, 664, 677, 793, 894
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	811
StyI	CCWWGG	3 cut(s)	786, 817, 842
TaaI	ACNGT	6 cut(s)	200, 235, 259, 304, 586, 700
TaqI	TCGA	3 cut(s)	51, 337, 540
TasI	AATT	6 cut(s)	123, 251, 664, 677, 793, 894
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	5 cut(s)	33, 59, 75, 92, 138
Tru9I	TTAA	5 cut(s)	33, 59, 75, 92, 138
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	5 cut(s)	38, 212, 311, 314, 463
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	5 cut(s)	119, 455, 586, 702, 824
TspRI	CASTG	1 cut(s)	781
XapI	RAATTY	2 cut(s)	251, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	793
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.