Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002563.1

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Forward (+)

102321 .. 107612

Gene Structure 5292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002563.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

atggcagttgcttcggcgggtgaggggaagaagaaatctgggataagcagcagcggcgacggctcagagcttggcggatggagaccgaaggcttggcggacggttctgggcaacgttagaggtcggagtacgttgcaggtttctggtagcgacctcacctgcaactgcaggtttctaggtagcgctgcaaccacgtcgcgggcgactccaccgactgcagataggtcctttcgaccccaggagtccctccagcaagccccgccgctccgtcgagccccgagccgagctgccgcgtcgacgtccgcaggttctggggtggacgtctgcactgtcgctaaagtgaggacgtcgacgctgcagcagcgttcagacggcgacggcggcgtgaatggtgccggattgaggacgaaggcatcccagacctcttctaggcagcgattgaggtcgaaggagattgaggttgaaggttttgggcagcgacctcatctgcaacttcaaggttctaggcagcgctgtaaactaatcgccggtgactccacccgactgcagactagtcatccccctggccttcgtcaggcaagaggtgttgcaccgttgacgcttgatcgaacagaaaccctgaacgttcgcactttaacgacatcagaaatgacttctgcagattttgttgatacggagaacagcagctgcggcggagagcctttcggtcaagtggtgcggtggctgaaggcggtgctggagagatcatggggtaaggtgctggaggcggcgagggaggcgaagaagctcggggaggatgatccgagaaggattgtgcattcgttcaaagtagggttggctctgacgttggtgtctcttttttattactatcgaccgctttatgatggcttaggtgacgatgcaatgtgggctgtcttgaccgtggtcgttgtctttgagttctcggttaacttggcaagatgggaaccaggtcatggcgggttcaagttcggccacccatgggagaagtatttgaatgttggaagccaaactcggcaatgtgcttataaaattgaagctctgaacacttacctgaacactgatatccaagtgcccgctgaaattcgaagcaaaattcttcaagaaccatgcataaatatttgcactgaatccggaaaagcattgaaggaattagcagcagccctcaagaaaatgactcggtcatcatcagctgattcccacattgcatgctcaaaagcagcagttgagagcctcaagttattgtcactcaaaagaggcatatggaaagatgctaatctgctggaaacaataccatctgctgcggtggcgtcacttcttattgaagtcgtagcatgtgttgagaagattgctgaagcagttcacgaactagcatccgtcgcacatttcaagactgaacagccacaattacttcaggagccagcgctttctgaagaatatcatgttgctattacaattgatcgtaattcaactgaggggctacccaaaaatggaagttcagatggcatcactactaatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

513

Amino Acids

55.43

Weight (kDa)

9.19

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1047
AarI	CACCTGC	1 cut(s)	167
AasI	GACNNNNNNGTC	1 cut(s)	850
AatII	GACGTC	3 cut(s)	302, 324, 350
Acc36I	ACCTGC	4 cut(s)	127, 159, 167, 296
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccBSI	CCGCTC	1 cut(s)	265
AccI	GTMKAC	2 cut(s)	296, 350
AccII	CGCG	2 cut(s)	199, 293
AccIII	TCCGGA	1 cut(s)	1151
AclI	AACGTT	2 cut(s)	114, 624
AclWI	GGATC	1 cut(s)	794
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	2 cut(s)	1101, 1113
AcuI	CTGAAG	4 cut(s)	746, 1392, 1415, 1470
AcyI	GRCGYC	4 cut(s)	299, 321, 347, 1328
AfaI	GTAC	1 cut(s)	130
AfeI	AGCGCT	3 cut(s)	184, 512, 1443
AfiI	CCNNNNNNNGG	7 cut(s)	198, 402, 429, 574, 974, 1000, 1508
AhlI	ACTAGT	1 cut(s)	551
AjiI	CACGTC	1 cut(s)	195
AjnI	CCWGG	3 cut(s)	237, 562, 967
AluBI	AGCT	6 cut(s)	70, 287, 687, 787, 1058, 1211
AluI	AGCT	6 cut(s)	70, 287, 687, 787, 1058, 1211
Alw26I	GTCTC	2 cut(s)	76, 858
AlwI	GGATC	1 cut(s)	794
AlwNI	CAGNNNCTG	2 cut(s)	311, 687
Ama87I	CYCGRG	2 cut(s)	277, 788
Aor13HI	TCCGGA	1 cut(s)	1151
Aor51HI	AGCGCT	3 cut(s)	184, 512, 1443
AoxI	GGCC	2 cut(s)	565, 991
ApoI	RAATTY	2 cut(s)	1101, 1113
Asp700I	GAANNNNTTC	1 cut(s)	1377
AspLEI	GCGC	3 cut(s)	185, 513, 1444
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	4 cut(s)	32, 148, 542, 905
AsuII	TTCGAA	1 cut(s)	1105
AvaI	CYCGRG	2 cut(s)	277, 788
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	1095
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	277
BccI	CCATC	5 cut(s)	72, 878, 954, 1321, 1514
BceAI	ACGGC	3 cut(s)	76, 388, 394
BcgI	CGANNNNNNTGC	3 cut(s)	28, 177, 211
BciT130I	CCWGG	3 cut(s)	239, 564, 969
BcoDI	GTCTC	2 cut(s)	76, 858
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	5 cut(s)	176, 429, 504, 552, 1388
BfmI	CTRYAG	5 cut(s)	166, 216, 356, 545, 657
BfoI	RGCGCY	3 cut(s)	186, 514, 1445
BfuAI	ACCTGC	4 cut(s)	127, 159, 167, 296
Bme1390I	CCNGG	3 cut(s)	239, 564, 969
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	2 cut(s)	277, 788
BmgBI	CACGTC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	394, 966, 1437
BmrFI	CCNGG	3 cut(s)	239, 564, 969
BmsI	GCATC	5 cut(s)	422, 889, 1279, 1400, 1533
BoxI	GACNNNNGTC	1 cut(s)	923
BpmI	CTGGAG	3 cut(s)	233, 758, 782
Bpu10I	CCTNAGC	1 cut(s)	889
Bpu14I	TTCGAA	1 cut(s)	1105
BpuEI	CTTGAG	2 cut(s)	1169, 1238
BsaBI	GATNNNNATC	1 cut(s)	1293
BsaHI	GRCGYC	4 cut(s)	299, 321, 347, 1328
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	237, 562, 921, 998
BsaWI	WCCGGW	1 cut(s)	1151
Bsc4I	CCNNNNNNNGG	7 cut(s)	198, 402, 429, 574, 974, 1000, 1508
Bse118I	RCCGGY	1 cut(s)	527
Bse3DI	GCAATG	3 cut(s)	909, 1043, 1221
Bse8I	GATNNNNATC	1 cut(s)	1293
BseAI	TCCGGA	1 cut(s)	1151
BseBI	CCWGG	3 cut(s)	239, 564, 969
BseDI	CCNNGG	4 cut(s)	237, 562, 921, 998
BseGI	GGATG	5 cut(s)	83, 413, 556, 802, 1391
BseJI	GATNNNNATC	1 cut(s)	1293
BseLI	CCNNNNNNNGG	7 cut(s)	198, 402, 429, 574, 974, 1000, 1508
BseMI	GCAATG	3 cut(s)	909, 1043, 1221
BseMII	CTCAG	2 cut(s)	78, 1482
BseSI	GKGCMC	1 cut(s)	1095
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	2 cut(s)	199, 293
Bsh1285I	CGRYCG	1 cut(s)	875
BshFI	GGCC	2 cut(s)	567, 993
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	875
BsiHKCI	CYCGRG	2 cut(s)	277, 788
BsiSI	CCGG	3 cut(s)	396, 528, 1152
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	7 cut(s)	198, 402, 429, 574, 974, 1000, 1508
BsmAI	GTCTC	2 cut(s)	76, 858
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	567, 993
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	2 cut(s)	277, 788
Bsp119I	TTCGAA	1 cut(s)	1105
Bsp1286I	GDGCHC	2 cut(s)	277, 1095
Bsp13I	TCCGGA	1 cut(s)	1151
Bsp143I	GATC	4 cut(s)	604, 743, 799, 1477
Bsp19I	CCATGG	1 cut(s)	998
BspANI	GGCC	2 cut(s)	567, 993
BspCNI	CTCAG	2 cut(s)	77, 1483
BspEI	TCCGGA	1 cut(s)	1151
BspFNI	CGCG	2 cut(s)	199, 293
BspLI	GGNNCC	3 cut(s)	394, 966, 1437
BspMAI	CTGCAG	5 cut(s)	170, 220, 360, 549, 661
BspMI	ACCTGC	4 cut(s)	127, 159, 167, 296
BspPI	GGATC	1 cut(s)	794
BspT104I	TTCGAA	1 cut(s)	1105
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	3 cut(s)	909, 1043, 1221
BsrFI	RCCGGY	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	237, 562, 921, 998
BssMI	GATC	4 cut(s)	604, 743, 799, 1477
BssNI	GRCGYC	4 cut(s)	299, 321, 347, 1328
BssT1I	CCWWGG	1 cut(s)	998
Bst2UI	CCWGG	3 cut(s)	239, 564, 969
Bst4CI	ACNGT	4 cut(s)	103, 331, 594, 922
Bst6I	CTCTTC	1 cut(s)	430
BstACI	GRCGYC	4 cut(s)	299, 321, 347, 1328
BstBI	TTCGAA	1 cut(s)	1105
BstC8I	GCNNGC	5 cut(s)	201, 255, 1095, 1228, 1440
BstDEI	CTNAG	3 cut(s)	64, 889, 1491
BstDSI	CCRYGG	2 cut(s)	921, 998
BstENI	CCTNNNNNAGG	2 cut(s)	427, 572
BstF5I	GGATG	5 cut(s)	83, 413, 556, 802, 1391
BstFNI	CGCG	2 cut(s)	199, 293
BstH2I	RGCGCY	3 cut(s)	186, 514, 1445
BstHHI	GCGC	3 cut(s)	185, 513, 1444
BstKTI	GATC	4 cut(s)	607, 746, 802, 1480
BstMAI	GTCTC	2 cut(s)	76, 858
BstMBI	GATC	4 cut(s)	604, 743, 799, 1477
BstMCI	CGRYCG	1 cut(s)	875
BstNI	CCWGG	3 cut(s)	239, 564, 969
BstNSI	RCATGY	2 cut(s)	1230, 1356
BstPAI	GACNNNNGTC	1 cut(s)	923
BstSCI	CCNGG	3 cut(s)	237, 562, 967
BstSFI	CTRYAG	5 cut(s)	166, 216, 356, 545, 657
BstSLI	GKGCMC	1 cut(s)	1095
BstUI	CGCG	2 cut(s)	199, 293
BsuRI	GGCC	2 cut(s)	567, 993
BtgI	CCRYGG	2 cut(s)	921, 998
BtrI	CACGTC	1 cut(s)	195
BtsCI	GGATG	5 cut(s)	83, 413, 556, 802, 1391
BtsIMutI	CAGTG	3 cut(s)	327, 1077, 1143
BveI	ACCTGC	4 cut(s)	127, 159, 167, 296
Cac8I	GCNNGC	5 cut(s)	201, 255, 1095, 1228, 1440
CaiI	CAGNNNCTG	2 cut(s)	311, 687
CfoI	GCGC	3 cut(s)	185, 513, 1444
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	4 cut(s)	282, 361, 607, 1317
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	7 cut(s)	747, 974, 999, 1128, 1227, 1353, 1460
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	64, 889, 1491
DpnI	GATC	4 cut(s)	606, 745, 801, 1479
DpnII	GATC	4 cut(s)	604, 743, 799, 1477
DrdI	GACNNNNNNGTC	1 cut(s)	850
DseDI	GACNNNNNNGTC	1 cut(s)	850
EaeI	YGGCCR	1 cut(s)	991
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
EciI	GGCGGA	3 cut(s)	90, 112, 708
Eco130I	CCWWGG	1 cut(s)	998
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	1084
Eco47I	GGWCC	1 cut(s)	225
Eco47III	AGCGCT	3 cut(s)	184, 512, 1443
Eco57I	CTGAAG	4 cut(s)	746, 1392, 1415, 1470
Eco88I	CYCGRG	2 cut(s)	277, 788
EcoNI	CCTNNNNNAGG	2 cut(s)	427, 572
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	237, 562, 967
EcoRV	GATATC	1 cut(s)	1084
EcoT14I	CCWWGG	1 cut(s)	998
EcoT22I	ATGCAT	1 cut(s)	1133
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	998
FaeI	CATG	7 cut(s)	750, 977, 1002, 1131, 1230, 1356, 1463
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	7 cut(s)	746, 973, 998, 1127, 1226, 1352, 1459
FauI	CCCGC	5 cut(s)	10, 192, 267, 971, 1102
FauNDI	CATATG	1 cut(s)	1280
FblI	GTMKAC	2 cut(s)	296, 350
FokI	GGATG	5 cut(s)	90, 400, 543, 809, 1378
FriOI	GRGCYC	1 cut(s)	277
FspBI	CTAG	5 cut(s)	176, 429, 504, 552, 1388
GlaI	GCGC	3 cut(s)	184, 512, 1443
GsuI	CTGGAG	3 cut(s)	233, 758, 782
HaeII	RGCGCY	3 cut(s)	186, 514, 1445
HaeIII	GGCC	2 cut(s)	567, 993
HapII	CCGG	3 cut(s)	396, 528, 1152
HgaI	GACGC	4 cut(s)	282, 361, 607, 1317
HhaI	GCGC	3 cut(s)	185, 513, 1444
Hin1I	GRCGYC	4 cut(s)	299, 321, 347, 1328
Hin1II	CATG	7 cut(s)	750, 977, 1002, 1131, 1230, 1356, 1463
Hin6I	GCGC	3 cut(s)	183, 511, 1442
HinP1I	GCGC	3 cut(s)	183, 511, 1442
HincII	GTYRAC	4 cut(s)	297, 351, 597, 949
HindII	GTYRAC	4 cut(s)	297, 351, 597, 949
HinfI	GANTC	6 cut(s)	205, 242, 533, 1148, 1195, 1214
HpaI	GTTAAC	1 cut(s)	949
HpaII	CCGG	3 cut(s)	396, 528, 1152
HphI	GGTGA	4 cut(s)	32, 148, 542, 905
Hpy166II	GTNNAC	7 cut(s)	297, 319, 351, 518, 597, 949, 1381
Hpy188I	TCNGA	9 cut(s)	67, 126, 370, 646, 804, 843, 1062, 1450, 1519
Hpy188III	TCNNGA	7 cut(s)	916, 1121, 1152, 1186, 1382, 1408, 1433
Hpy8I	GTNNAC	7 cut(s)	297, 319, 351, 518, 597, 949, 1381
Hpy99I	CGWCG	9 cut(s)	62, 199, 273, 298, 301, 352, 355, 380, 1400
HpyAV	CCTTC	8 cut(s)	82, 403, 442, 458, 578, 721, 801, 1159
HpyCH4III	ACNGT	4 cut(s)	103, 331, 594, 922
HpyCH4IV	ACGT	8 cut(s)	114, 131, 194, 299, 321, 347, 624, 845
HpyF3I	CTNAG	3 cut(s)	64, 889, 1491
HpySE526I	ACGT	8 cut(s)	114, 131, 194, 299, 321, 347, 624, 845
Hsp92I	GRCGYC	4 cut(s)	299, 321, 347, 1328
Hsp92II	CATG	7 cut(s)	750, 977, 1002, 1131, 1230, 1356, 1463
HspAI	GCGC	3 cut(s)	183, 511, 1442
Kpn2I	TCCGGA	1 cut(s)	1151
KspAI	GTTAAC	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	604, 743, 799, 1477
LmnI	GCTCC	2 cut(s)	270, 1435
LweI	GCATC	5 cut(s)	422, 889, 1279, 1400, 1533
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	5 cut(s)	176, 429, 504, 552, 1388
MaeII	ACGT	8 cut(s)	114, 131, 194, 299, 321, 347, 624, 845
MaeIII	GTNAC	4 cut(s)	530, 893, 1263, 1329
MalI	GATC	4 cut(s)	606, 745, 801, 1479
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	4 cut(s)	604, 743, 799, 1477
MboII	GAAGA	7 cut(s)	40, 43, 417, 793, 1109, 1375, 1463
MfeI	CAATTG	1 cut(s)	1473
MhlI	GDGCHC	2 cut(s)	277, 1095
MluCI	AATT	7 cut(s)	1050, 1101, 1113, 1169, 1424, 1473, 1483
MlyI	GAGTC	4 cut(s)	199, 251, 527, 1189
MmeI	TCCRAC	2 cut(s)	104, 1000
Mph1103I	ATGCAT	1 cut(s)	1133
MroI	TCCGGA	1 cut(s)	1151
MroXI	GAANNNNTTC	1 cut(s)	1377
MseI	TTAA	3 cut(s)	635, 948, 1540
MspA1I	CMGCKG	4 cut(s)	54, 687, 1097, 1211
MspI	CCGG	3 cut(s)	396, 528, 1152
MspR9I	CCNGG	3 cut(s)	239, 564, 969
MunI	CAATTG	1 cut(s)	1473
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	3 cut(s)	239, 564, 969
MvnI	CGCG	2 cut(s)	199, 293
NcoI	CCATGG	1 cut(s)	998
NdeI	CATATG	1 cut(s)	1280
NdeII	GATC	4 cut(s)	604, 743, 799, 1477
NlaIII	CATG	7 cut(s)	750, 977, 1002, 1131, 1230, 1356, 1463
NlaIV	GGNNCC	3 cut(s)	394, 966, 1437
NmeAIII	GCCGAG	2 cut(s)	308, 1012
NmuCI	GTSAC	4 cut(s)	530, 893, 1263, 1329
NsiI	ATGCAT	1 cut(s)	1133
NspI	RCATGY	2 cut(s)	1230, 1356
NspV	TTCGAA	1 cut(s)	1105
PaeI	GCATGC	1 cut(s)	1230
PaqCI	CACCTGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	1377
PfeI	GAWTC	2 cut(s)	1148, 1214
PflFI	GACNNNGTC	1 cut(s)	1198
PflMI	CCANNNNNTGG	1 cut(s)	974
PleI	GAGTC	4 cut(s)	199, 250, 527, 1189
PpsI	GAGTC	4 cut(s)	199, 250, 527, 1189
PpuMI	RGGWCCY	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	1047
Psp1406I	AACGTT	2 cut(s)	114, 624
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	237, 562, 967
PspGI	CCWGG	3 cut(s)	237, 562, 967
PspN4I	GGNNCC	3 cut(s)	394, 966, 1437
PspPI	GGNCC	1 cut(s)	225
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	5 cut(s)	170, 220, 360, 549, 661
PstNI	CAGNNNCTG	2 cut(s)	311, 687
PsyI	GACNNNGTC	1 cut(s)	1198
PvuII	CAGCTG	2 cut(s)	687, 1211
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SalI	GTCGAC	2 cut(s)	295, 349
SaqAI	TTAA	3 cut(s)	635, 948, 1540
Sau3AI	GATC	4 cut(s)	604, 743, 799, 1477
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	4 cut(s)	199, 251, 527, 1189
ScrFI	CCNGG	3 cut(s)	239, 564, 969
SduI	GDGCHC	2 cut(s)	277, 1095
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	5 cut(s)	422, 889, 1279, 1400, 1533
SfcI	CTRYAG	5 cut(s)	166, 216, 356, 545, 657
SfuI	TTCGAA	1 cut(s)	1105
SgrAI	CRCCGGYG	1 cut(s)	527
SgrDI	CGTCGACG	2 cut(s)	295, 349
SinI	GGWCC	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	1184, 1253
SmoI	CTYRAG	2 cut(s)	1184, 1253
SpeI	ACTAGT	1 cut(s)	551
SphI	GCATGC	1 cut(s)	1230
Sse9I	AATT	7 cut(s)	1050, 1101, 1113, 1169, 1424, 1473, 1483
SspI	AATATT	1 cut(s)	1138
SspMI	CTAG	5 cut(s)	176, 429, 504, 552, 1388
StyD4I	CCNGG	3 cut(s)	237, 562, 967
StyI	CCWWGG	1 cut(s)	998
TaaI	ACNGT	4 cut(s)	103, 331, 594, 922
TaiI	ACGT	8 cut(s)	117, 134, 197, 302, 324, 350, 627, 848
TaqI	TCGA	8 cut(s)	232, 271, 296, 350, 446, 607, 871, 1105
TaqII	GACCGA	3 cut(s)	100, 695, 1188
TasI	AATT	7 cut(s)	1050, 1101, 1113, 1169, 1424, 1473, 1483
TauI	GCSGC	6 cut(s)	57, 265, 293, 384, 693, 770
TfiI	GAWTC	2 cut(s)	1148, 1214
Tru1I	TTAA	3 cut(s)	635, 948, 1540
Tru9I	TTAA	3 cut(s)	635, 948, 1540
TscAI	CASTG	3 cut(s)	334, 1084, 1150
TseFI	GTSAC	4 cut(s)	530, 893, 1263, 1329
Tsp45I	GTSAC	4 cut(s)	530, 893, 1263, 1329
TspGWI	ACGGA	3 cut(s)	257, 689, 1384
TspRI	CASTG	3 cut(s)	334, 1084, 1150
Tth111I	GACNNNGTC	1 cut(s)	1198
Van91I	CCANNNNNTGG	1 cut(s)	974
VpaK11BI	GGWCC	1 cut(s)	225
XagI	CCTNNNNNAGG	2 cut(s)	427, 572
XapI	RAATTY	2 cut(s)	1101, 1113
XceI	RCATGY	2 cut(s)	1230, 1356
XmiI	GTMKAC	2 cut(s)	296, 350
XmnI	GAANNNNTTC	1 cut(s)	1377
XspI	CTAG	5 cut(s)	176, 429, 504, 552, 1388
ZraI	GACGTC	3 cut(s)	300, 322, 348
Zsp2I	ATGCAT	1 cut(s)	1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.