Rroxscaffold_1G00033390

Aluminum-activated malate transporter 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000374
Physical Location & Seq
Reverse (-)
48192355 .. 48194749
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033390.1

Sequence Viewer

Length: 1419 bp
ATGGCATCTCAAGTAGCAGGTGTTAAGAATACCAATGAGGATGAAAATGCTCGCAAAGATCTTGGTTTTTGTGGGAGGGTGAAGAACAAGGTTGTCGAGTTTCCGACGAAGTTAAAGAAGCTAGGGCAAGATGATCCGAGAAGGATTGTTCATTCTCTCAAAGTAGGACTAGCAGTTCTCTTGGTGTCATTACTCTACTACTTTGATCCTCTCTATGATGGCCTCGGTGCCACTGCTATGTGGGCTGTTTTAACTGTTGTGGTTGTTTTCGAATTTTCCGTAGGAGCAACACTTGGAAGAGGTTTGAACAGGATTTTGGCAACGTTCCTCGCAGGTTCTCTAGGATTTGGTGTTCATCATTTGGCAAATCTTTCAGGAGAAAAAGGTCATCCAATACTCATTGGTCTTTTCGTCTTTATACTAGCTGCGTCAGTGACATTTTTCCGCTTCTTTCCCCGGATTAAGGCAAGATATGATTATGGACTCCTGATTTTTATCTTGACATTTTGTATGATATCCGTATCCGGATACAGAGATGAAGAGATACTAGAGATGGCACACAAGAGGGCGTCCACAATCCTTATAGGTGCCTTTACAGCTGTGTCTGTGTGTGTTTTCATTTGCCCGGTGTGGGCTGGTGATGACCTGCACAACTCGGTTGCTACCAACATCGAAAAGCTTGGGAGCTTCTTGGAAGGGTTTGGGCGTGAATGCTTCAAAATATCTTGCAAGGGAGGAGAGTCTAACAAGGCACTTCTAAAAGGATATTGCAGTGTTCTCAACTCGAAACAGAGTGAAGAAAGTCAGGTTAATTTTGCTAGGTGGGAGCCTAGACATGGTCGGTTTAGGTTCCGTCATCCTTGGAAACACTATCTGAAGATCGGAAGCCTTACCCGACAATGTGCCTACCGGATTGATACACTTAATGGCTACATTAACTCCGAAATCCAGACACCGTTAAATATCCGAAGCACCAAAGTTCAAGAGCTGTGCATGAAGATTAGCTCAGAGTCGAGCAAGGCATTAAAAGAACTAGCATTGGCCATGAAAACAATGACTCGACCAACCATTGCCACTGCTCACATAACAAAATCAAGAATTGCAGCTAATAGCCTGAAATCCTTTCTCAAGTCTCCAGGCTTGGGTGGAGACATCCACCTACTAGACATCATACCAGCTGTGACCGTAGCTTCACTGCTAACTGATGTGGTTGCCTACGCTGAACAAATTGAGAAATCCATACAAGAACTAGCCTCCCTCTCACATGTGCAATTCAAAAGTGCAGAACCAAAAACAGAGCAAGATCAGACGAAGTTACACAAGCATGGCATAGTGCACCCTTGTGCTGCAACCGATGGACCACATCATGTTATCACAATTGTTCAACCATCTCTAAAGGAAATCGAAAACAAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ALMT

Protein Analysis

472

Amino Acids

52.1

Weight (kDa)

9.24

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 40 - 378 1.1e-144 Aluminium activated malate transporter
FUSC_2 PF13515 77 - 202 1.2e-10 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis pycom03g10930 pycom11g14730
rosa_chinensis RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 8
Acc36I ACCTGC 3 cut(s) 8, 323, 654
AccB1I GGYRCC 2 cut(s) 227, 587
AccIII TCCGGA 1 cut(s) 524
AciI CCGC 1 cut(s) 445
AclI AACGTT 1 cut(s) 323
AclWI GGATC 2 cut(s) 128, 200
AcoI YGGCCR 1 cut(s) 1041
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 569
AfiI CCNNNNNNNGG 4 cut(s) 463, 631, 836, 1142
AflIII ACRYGT 1 cut(s) 1264
AgsI TTSAA 5 cut(s) 307, 718, 983, 1276, 1385
AjnI CCWGG 1 cut(s) 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AleI CACNNNNGTG 1 cut(s) 1341
AloI GAACNNNNNNTCC 4 cut(s) 159, 191, 336, 368
Alw21I GWGCWC 1 cut(s) 1338
Alw26I GTCTC 2 cut(s) 1137, 1143
Alw44I GTGCAC 1 cut(s) 1334
AlwI GGATC 2 cut(s) 128, 200
Aor13HI TCCGGA 1 cut(s) 524
AoxI GGCC 2 cut(s) 220, 1041
ApaLI GTGCAC 1 cut(s) 1334
ApeKI GCWGC 3 cut(s) 425, 1103, 1346
ApoI RAATTY 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 1358
AsuC2I CCSGG 2 cut(s) 457, 626
AsuHPI GGTGA 2 cut(s) 91, 650
AsuII TTCGAA 1 cut(s) 270
AvaII GGWCC 1 cut(s) 1358
BaeGI GKGCMC 1 cut(s) 1338
BalI TGGCCA 1 cut(s) 1043
BanI GGYRCC 2 cut(s) 227, 587
Bbv12I GWGCWC 1 cut(s) 1338
BbvI GCAGC 3 cut(s) 412, 1115, 1333
BccI CCATC 4 cut(s) 212, 547, 1349, 1396
BciT130I CCWGG 1 cut(s) 1137
BciVI GTATCC 2 cut(s) 521, 532
BcnI CCSGG 2 cut(s) 457, 626
BcoDI GTCTC 2 cut(s) 1137, 1143
BfuAI ACCTGC 3 cut(s) 8, 323, 654
BfuI GTATCC 2 cut(s) 521, 532
BglII AGATCT 1 cut(s) 58
BisI GCNGC 3 cut(s) 426, 1104, 1347
BlsI GCNGC 3 cut(s) 427, 1105, 1348
Bme1390I CCNGG 3 cut(s) 457, 626, 1137
Bme18I GGWCC 1 cut(s) 1358
BmgT120I GGNCC 1 cut(s) 1358
BmiI GGNNCC 4 cut(s) 229, 589, 828, 851
BmrFI CCNGG 3 cut(s) 457, 626, 1137
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 1119
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 1112
BpuMI CCSGG 2 cut(s) 457, 626
BsaBI GATNNNNATC 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 3 cut(s) 223, 455, 860
BsaWI WCCGGW 2 cut(s) 524, 909
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 4 cut(s) 463, 631, 836, 1142
Bse3DI GCAATG 1 cut(s) 1068
Bse8I GATNNNNATC 1 cut(s) 494
BseAI TCCGGA 1 cut(s) 524
BseBI CCWGG 1 cut(s) 1137
BseDI CCNNGG 3 cut(s) 223, 455, 860
BseGI GGATG 4 cut(s) 46, 388, 856, 1152
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 4 cut(s) 463, 631, 836, 1142
BseMI GCAATG 1 cut(s) 1068
BseMII CTCAG 1 cut(s) 1020
BseRI GAGGAG 1 cut(s) 750
BseSI GKGCMC 1 cut(s) 1338
BseXI GCAGC 3 cut(s) 412, 1115, 1333
BsgI GTGCAG 2 cut(s) 632, 1302
BshFI GGCC 2 cut(s) 222, 1043
BshNI GGYRCC 2 cut(s) 227, 587
BsiHKAI GWGCWC 1 cut(s) 1338
BsiSI CCGG 4 cut(s) 457, 525, 626, 910
BslI CCNNNNNNNGG 4 cut(s) 463, 631, 836, 1142
BsmAI GTCTC 2 cut(s) 1137, 1143
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 2 cut(s) 222, 1043
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 1338
Bsp13I TCCGGA 1 cut(s) 524
Bsp143I GATC 5 cut(s) 58, 133, 205, 879, 1303
BspACI CCGC 1 cut(s) 445
BspANI GGCC 2 cut(s) 222, 1043
BspCNI CTCAG 1 cut(s) 1019
BspEI TCCGGA 1 cut(s) 524
BspLI GGNNCC 4 cut(s) 229, 589, 828, 851
BspMI ACCTGC 3 cut(s) 8, 323, 654
BspPI GGATC 2 cut(s) 128, 200
BspT104I TTCGAA 1 cut(s) 270
BspT107I GGYRCC 2 cut(s) 227, 587
BsrDI GCAATG 1 cut(s) 1068
BssECI CCNNGG 3 cut(s) 223, 455, 860
BssMI GATC 5 cut(s) 58, 133, 205, 879, 1303
BssNI GRCGYC 1 cut(s) 569
BssT1I CCWWGG 1 cut(s) 860
Bst2UI CCWGG 1 cut(s) 1137
Bst4CI ACNGT 3 cut(s) 256, 957, 1186
Bst6I CTCTTC 2 cut(s) 292, 534
BstACI GRCGYC 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 1006
BstF5I GGATG 4 cut(s) 46, 388, 856, 1152
BstKTI GATC 5 cut(s) 61, 136, 208, 882, 1306
BstMAI GTCTC 2 cut(s) 1137, 1143
BstMBI GATC 5 cut(s) 58, 133, 205, 879, 1303
BstMWI GCNNNNNNNGC 2 cut(s) 242, 596
BstNI CCWGG 1 cut(s) 1137
BstNSI RCATGY 1 cut(s) 1268
BstSCI CCNGG 3 cut(s) 455, 624, 1135
BstSLI GKGCMC 1 cut(s) 1338
BstV1I GCAGC 3 cut(s) 412, 1115, 1333
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 2 cut(s) 521, 532
BsuRI GGCC 2 cut(s) 222, 1043
BtsCI GGATG 4 cut(s) 46, 388, 856, 1152
BtsI GCAGTG 4 cut(s) 231, 778, 1074, 1193
BtsIMutI CAGTG 5 cut(s) 231, 438, 778, 1074, 1193
BveI ACCTGC 3 cut(s) 8, 323, 654
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 1358
CseI GACGC 2 cut(s) 417, 558
CviAII CATG 6 cut(s) 836, 994, 1045, 1265, 1325, 1367
DdeI CTNAG 1 cut(s) 1006
DpnI GATC 5 cut(s) 60, 135, 207, 881, 1305
DpnII GATC 5 cut(s) 58, 133, 205, 879, 1303
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 2 cut(s) 292, 534
EarI CTCTTC 2 cut(s) 292, 534
Eco130I CCWWGG 1 cut(s) 860
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 1358
Eco57I CTGAAG 1 cut(s) 896
EcoRII CCWGG 1 cut(s) 1135
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 860
ErhI CCWWGG 1 cut(s) 860
FaeI CATG 6 cut(s) 839, 997, 1048, 1268, 1328, 1370
FatI CATG 6 cut(s) 835, 993, 1044, 1264, 1324, 1366
Fnu4HI GCNGC 3 cut(s) 426, 1104, 1347
FokI GGATG 4 cut(s) 53, 375, 843, 1139
Fsp4HI GCNGC 3 cut(s) 426, 1104, 1347
GluI GCNGC 3 cut(s) 426, 1104, 1347
GsuI CTGGAG 1 cut(s) 1119
HaeIII GGCC 2 cut(s) 222, 1043
HapII CCGG 4 cut(s) 457, 525, 626, 910
HgaI GACGC 2 cut(s) 417, 558
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 6 cut(s) 839, 997, 1048, 1268, 1328, 1370
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 4 cut(s) 483, 740, 1010, 1057
HpaII CCGG 4 cut(s) 457, 525, 626, 910
HphI GGTGA 2 cut(s) 91, 650
Hpy166II GTNNAC 2 cut(s) 573, 1336
Hpy188I TCNGA 8 cut(s) 105, 138, 876, 884, 943, 968, 1009, 1308
Hpy188III TCNNGA 7 cut(s) 375, 487, 499, 525, 949, 983, 1095
Hpy8I GTNNAC 2 cut(s) 573, 1336
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 135, 689
HpyCH4III ACNGT 3 cut(s) 256, 957, 1186
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 9 cut(s) 649, 729, 771, 993, 1103, 1270, 1283, 1336, 1349
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 596
HpyF3I CTNAG 1 cut(s) 1006
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 6 cut(s) 839, 997, 1048, 1268, 1328, 1370
Kpn2I TCCGGA 1 cut(s) 524
Kzo9I GATC 5 cut(s) 58, 133, 205, 879, 1303
LmnI GCTCC 3 cut(s) 284, 684, 826
Lsp1109I GCAGC 3 cut(s) 412, 1115, 1333
LweI GCATC 1 cut(s) 14
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 3 cut(s) 433, 1180, 1314
MalI GATC 5 cut(s) 60, 135, 207, 881, 1305
MboI GATC 5 cut(s) 58, 133, 205, 879, 1303
MboII GAAGA 6 cut(s) 94, 309, 551, 809, 889, 1009
MfeI CAATTG 1 cut(s) 1377
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 1338
MlsI TGGCCA 1 cut(s) 1043
MluCI AATT 6 cut(s) 272, 811, 1098, 1227, 1271, 1377
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 4 cut(s) 477, 749, 1019, 1051
MmeI TCCRAC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 1043
MroI TCCGGA 1 cut(s) 524
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 9 cut(s) 24, 113, 251, 462, 810, 924, 936, 959, 1025
MslI CAYNNNNRTG 3 cut(s) 236, 1323, 1341
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 2 cut(s) 599, 1178
MspI CCGG 4 cut(s) 457, 525, 626, 910
MspR9I CCNGG 3 cut(s) 457, 626, 1137
MunI CAATTG 1 cut(s) 1377
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 1 cut(s) 1137
MwoI GCNNNNNNNGC 2 cut(s) 242, 596
NciI CCSGG 2 cut(s) 457, 626
NdeII GATC 5 cut(s) 58, 133, 205, 879, 1303
NlaIII CATG 6 cut(s) 839, 997, 1048, 1268, 1328, 1370
NlaIV GGNNCC 4 cut(s) 229, 589, 828, 851
NmuCI GTSAC 2 cut(s) 433, 1180
NspI RCATGY 1 cut(s) 1268
NspV TTCGAA 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 1341
PaqCI CACCTGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 1264
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 716
PflFI GACNNNGTC 1 cut(s) 837
PkrI GCNGC 3 cut(s) 427, 1105, 1348
PleI GAGTC 4 cut(s) 477, 748, 1018, 1051
PpsI GAGTC 4 cut(s) 477, 748, 1018, 1051
PscI ACATGT 1 cut(s) 1264
Psp1406I AACGTT 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 1135
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 4 cut(s) 229, 589, 828, 851
PspPI GGNCC 1 cut(s) 1358
PsuI RGATCY 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 837
PvuII CAGCTG 2 cut(s) 599, 1178
RseI CAYNNNNRTG 3 cut(s) 236, 1323, 1341
SaqAI TTAA 9 cut(s) 24, 113, 251, 462, 810, 924, 936, 959, 1025
SatI GCNGC 3 cut(s) 426, 1104, 1347
Sau3AI GATC 5 cut(s) 58, 133, 205, 879, 1303
Sau96I GGNCC 1 cut(s) 1358
SchI GAGTC 4 cut(s) 477, 749, 1019, 1051
ScrFI CCNGG 3 cut(s) 457, 626, 1137
SduI GDGCHC 1 cut(s) 1338
SfaNI GCATC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 270
SinI GGWCC 1 cut(s) 1358
SmiMI CAYNNNNRTG 3 cut(s) 236, 1323, 1341
SmlI CTYRAG 2 cut(s) 9, 1127
SmoI CTYRAG 2 cut(s) 9, 1127
Sse9I AATT 6 cut(s) 272, 811, 1098, 1227, 1271, 1377
SsiI CCGC 1 cut(s) 445
StyD4I CCNGG 3 cut(s) 455, 624, 1135
StyI CCWWGG 1 cut(s) 860
TaaI ACNGT 3 cut(s) 256, 957, 1186
TaiI ACGT 1 cut(s) 326
TaqI TCGA 7 cut(s) 96, 270, 672, 785, 1013, 1060, 1404
TasI AATT 6 cut(s) 272, 811, 1098, 1227, 1271, 1377
Tru1I TTAA 9 cut(s) 24, 113, 251, 462, 810, 924, 936, 959, 1025
Tru9I TTAA 9 cut(s) 24, 113, 251, 462, 810, 924, 936, 959, 1025
TscAI CASTG 5 cut(s) 238, 438, 778, 1081, 1200
TseFI GTSAC 2 cut(s) 433, 1180
TseI GCWGC 3 cut(s) 425, 1103, 1346
Tsp45I GTSAC 2 cut(s) 433, 1180
TspDTI ATGAA 7 cut(s) 57, 140, 344, 552, 607, 1010, 1061
TspGWI ACGGA 3 cut(s) 268, 508, 842
TspRI CASTG 5 cut(s) 238, 438, 778, 1081, 1200
Tth111I GACNNNGTC 1 cut(s) 837
VneI GTGCAC 1 cut(s) 1334
VpaK11BI GGWCC 1 cut(s) 1358
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.