Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Forward (+)

45932154 .. 45934017

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTTATTCTACTTTGAACCACTGTATGAAGGTTTAGGTCTTGCTGCTATGTGGGCTATTCTGACTGTTGTGGTCGTTTTTGAATTTTCTGTTGGAGCGACAATAGGACGAGGTTTGAATAGAATGATGTCAACTGTAGTAGCTGCTGCTCTTGGCATTGGAGCTCATCGATTAGCAACTCTGACAGGAAATCAAGGAGAGCCTATACTTATTGCTCTCTTTGTCTTCGTAGAAGCTGGAATAGTGACATTCTTCAGATTCATTCCCCAAATGAAGACAAGATACGATTATGGGCTGCTGATATTCAACGTGACGTTCTGCCTAGTATCGGTGTCTGGATATCGCGACAAAGTGGTCATACAAATGGGATTCGAAAGGGTATGTACCATCACCATTGGAGGCTGTATCGCTGTTGCTGTTTGTGTTTTCATTCGTCCAGTATGGATAGGGGTGGAGCTTCACAATCGGATTTCTACCAACATGGAAAAGCTGGCCAATTTCTTAGAAGAATTTGGAGATGAATACTTTAAAGTATCTGAAAATGAGCAGACCAGAGAGAAGTCATCGTTTATTGAGGGATATAAAAGTGTTCTAACTTCAAAAGGCAGTGAAAACACTATGGCTAATTTGGCAAGATGGGAACCGGGCCATGGGAATTTCAGATTTCGTCATCCATGGGAACAATACTTGAAAGTTGGAACCCTTCCTCGCCAATGTGCGTTCAAAATTGAAGCTCTCAACAACTACCTTACCTCTGAAACCCAAACACCTCAGGAAGTTAAAAGCATAATACAGGGGCCAAGCGTGGTTATAAGCTCGGAGTGTGGGAAAGCGTTGAAGGAGTTAGCAACCTCAGTAAAGAAAATGACCAAATCATCCTCAAATGAGCCTCATATTGCAAAGTCGAAAGATGCTGCTGAGGAACTCAAAGCTGTTATAAGATCAAGCTTGTGTAAACACCCAGCTGATTCTCTACATATAATACAAGAAGGTGCAGTGGCTTCCCTACTCCTTGAAATTATCACATGTATAGAGAAAATTGCCGACGCTGCTCATAAACTAGCATCCCAAGCACATTTTAAGGATGTAAAGCCTACAGTGAAACCGGACCAGGAAAACTCCGTGAATGATGGGCCACACCATGTTATTACAATTGAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

387

Amino Acids

42.78

Weight (kDa)

6.84

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	2 - 315	1.2e-122	Aluminium activated malate transporter
FUSC_2	PF13515	16 - 140	4.4e-09	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	812, 938
AasI	GACNNNNNNGTC	1 cut(s)	353
AccII	CGCG	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	83, 509, 655
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	328, 650
AflIII	ACRYGT	1 cut(s)	1025
AjnI	CCWGG	1 cut(s)	1110
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
Alw21I	GWGCWC	1 cut(s)	166
AoxI	GGCC	4 cut(s)	492, 646, 797, 1133
ApeKI	GCWGC	6 cut(s)	44, 143, 146, 295, 914, 1049
ApoI	RAATTY	3 cut(s)	83, 509, 655
AspS9I	GGNCC	4 cut(s)	646, 797, 1108, 1133
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	1108
AxyI	CCTNAGG	1 cut(s)	771
BalI	TGGCCA	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	2 cut(s)	217, 281
Bbv12I	GWGCWC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	6 cut(s)	31, 130, 133, 282, 901, 1036
BccI	CCATC	3 cut(s)	395, 630, 1124
BciT130I	CCWGG	1 cut(s)	1112
BcnI	CCSGG	1 cut(s)	645
BfaI	CTAG	2 cut(s)	323, 1061
BfmI	CTRYAG	2 cut(s)	135, 1095
BisI	GCNGC	6 cut(s)	45, 144, 147, 296, 915, 1050
BlsI	GCNGC	6 cut(s)	46, 145, 148, 297, 916, 1051
Bme1390I	CCNGG	2 cut(s)	645, 1112
Bme18I	GGWCC	1 cut(s)	1108
BmgT120I	GGNCC	4 cut(s)	646, 797, 1108, 1133
BmiI	GGNNCC	3 cut(s)	642, 700, 798
BmrFI	CCNGG	2 cut(s)	645, 1112
BmsI	GCATC	2 cut(s)	901, 1073
BpiI	GAAGAC	2 cut(s)	217, 281
Bpu10I	CCTNAGC	1 cut(s)	918
Bpu14I	TTCGAA	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	649, 674
BsaWI	WCCGGW	1 cut(s)	1105
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 650
Bse1I	ACTGG	1 cut(s)	437
Bse21I	CCTNAGG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	1112
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	649, 674
BseGI	GGATG	4 cut(s)	670, 875, 1064, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	328, 650
BseMII	CTCAG	3 cut(s)	785, 867, 909
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	6 cut(s)	31, 130, 133, 282, 901, 1036
BseYI	CCCAGC	1 cut(s)	961
BsgI	GTGCAG	1 cut(s)	1014
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	4 cut(s)	494, 648, 799, 1135
BshVI	ATCGAT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	644, 1106
BslI	CCNNNNNNNGG	2 cut(s)	328, 650
BsnI	GGCC	4 cut(s)	494, 648, 799, 1135
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	941
Bsp19I	CCATGG	2 cut(s)	649, 674
Bsp68I	TCGCGA	1 cut(s)	345
BspANI	GGCC	4 cut(s)	494, 648, 799, 1135
BspCNI	CTCAG	3 cut(s)	784, 866, 910
BspDI	ATCGAT	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	642, 700, 798
BspT104I	TTCGAA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	649, 674
BssMI	GATC	1 cut(s)	941
BssT1I	CCWWGG	2 cut(s)	649, 674
Bst2UI	CCWGG	1 cut(s)	1112
Bst4CI	ACNGT	4 cut(s)	24, 67, 136, 1099
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	4 cut(s)	502, 771, 853, 918
BstDSI	CCRYGG	2 cut(s)	649, 674
BstF5I	GGATG	4 cut(s)	670, 875, 1064, 1090
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	1 cut(s)	944
BstMBI	GATC	1 cut(s)	941
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 629, 1049, 1070
BstNI	CCWGG	1 cut(s)	1112
BstNSI	RCATGY	1 cut(s)	1029
BstSCI	CCNGG	2 cut(s)	643, 1110
BstSFI	CTRYAG	2 cut(s)	135, 1095
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	6 cut(s)	31, 130, 133, 282, 901, 1036
BstV2I	GAAGAC	2 cut(s)	217, 281
Bsu15I	ATCGAT	1 cut(s)	169
Bsu36I	CCTNAGG	1 cut(s)	771
BsuRI	GGCC	4 cut(s)	494, 648, 799, 1135
BsuTUI	ATCGAT	1 cut(s)	169
BtgI	CCRYGG	2 cut(s)	649, 674
BtsCI	GGATG	4 cut(s)	670, 875, 1064, 1090
BtsI	GCAGTG	2 cut(s)	613, 1002
BtsIMutI	CAGTG	4 cut(s)	20, 613, 1002, 1104
BtuMI	TCGCGA	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	492
Cfr13I	GGNCC	4 cut(s)	646, 797, 1108, 1133
ClaI	ATCGAT	1 cut(s)	169
CseI	GACGC	1 cut(s)	1055
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	5 cut(s)	481, 650, 675, 1026, 1142
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	4 cut(s)	502, 771, 853, 918
DpnI	GATC	1 cut(s)	943
DpnII	GATC	1 cut(s)	941
DraI	TTTAAA	1 cut(s)	529
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	649, 674
Eco24I	GRGCYC	1 cut(s)	166
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	1108
Eco53kI	GAGCTC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	771
EcoICRI	GAGCTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	1110
EcoRV	GATATC	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	649, 674
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	649, 674
FaeI	CATG	5 cut(s)	484, 653, 678, 1029, 1145
FatI	CATG	5 cut(s)	480, 649, 674, 1025, 1141
Fnu4HI	GCNGC	6 cut(s)	45, 144, 147, 296, 915, 1050
FokI	GGATG	4 cut(s)	657, 862, 1051, 1097
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	6 cut(s)	45, 144, 147, 296, 915, 1050
FspBI	CTAG	2 cut(s)	323, 1061
GluI	GCNGC	6 cut(s)	45, 144, 147, 296, 915, 1050
GsaI	CCCAGC	1 cut(s)	965
HaeIII	GGCC	4 cut(s)	494, 648, 799, 1135
HapII	CCGG	2 cut(s)	644, 1106
HgaI	GACGC	1 cut(s)	1055
Hin1II	CATG	5 cut(s)	484, 653, 678, 1029, 1145
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	946
HinfI	GANTC	3 cut(s)	258, 369, 968
HpaII	CCGG	2 cut(s)	644, 1106
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	132, 956
Hpy188I	TCNGA	8 cut(s)	63, 183, 257, 468, 538, 662, 757, 820
Hpy188III	TCNNGA	3 cut(s)	336, 344, 773
Hpy8I	GTNNAC	2 cut(s)	132, 956
Hpy99I	CGWCG	1 cut(s)	1049
HpyAV	CCTTC	4 cut(s)	23, 713, 832, 983
HpyCH4III	ACNGT	4 cut(s)	24, 67, 136, 1099
HpyCH4IV	ACGT	2 cut(s)	309, 314
HpyCH4V	TGCA	2 cut(s)	899, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 629, 1049, 1070
HpyF3I	CTNAG	4 cut(s)	502, 771, 853, 918
HpySE526I	ACGT	2 cut(s)	309, 314
Hsp92II	CATG	5 cut(s)	484, 653, 678, 1029, 1145
Kzo9I	GATC	1 cut(s)	941
LmnI	GCTCC	3 cut(s)	95, 161, 454
Lsp1109I	GCAGC	6 cut(s)	31, 130, 133, 282, 901, 1036
LweI	GCATC	2 cut(s)	901, 1073
MaeI	CTAG	2 cut(s)	323, 1061
MaeII	ACGT	2 cut(s)	309, 314
MaeIII	GTNAC	2 cut(s)	244, 310
MalI	GATC	1 cut(s)	943
MboI	GATC	1 cut(s)	941
MboII	GAAGA	4 cut(s)	217, 244, 286, 518
MfeI	CAATTG	1 cut(s)	1152
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	9 cut(s)	83, 496, 509, 625, 655, 726, 1017, 1038, 1152
MluNI	TGGCCA	1 cut(s)	494
MmeI	TCCRAC	2 cut(s)	73, 676
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	3 cut(s)	528, 780, 1080
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	965
MspI	CCGG	2 cut(s)	644, 1106
MspR9I	CCNGG	2 cut(s)	645, 1112
MunI	CAATTG	1 cut(s)	1152
MvaI	CCWGG	1 cut(s)	1112
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	53, 629, 1049, 1070
NciI	CCSGG	1 cut(s)	645
NcoI	CCATGG	2 cut(s)	649, 674
NdeII	GATC	1 cut(s)	941
NlaIII	CATG	5 cut(s)	484, 653, 678, 1029, 1145
NlaIV	GGNNCC	3 cut(s)	642, 700, 798
NmuCI	GTSAC	2 cut(s)	244, 310
NruI	TCGCGA	1 cut(s)	345
NspI	RCATGY	1 cut(s)	1029
NspV	TTCGAA	1 cut(s)	372
PciI	ACATGT	1 cut(s)	1025
PfeI	GAWTC	3 cut(s)	258, 369, 968
PkrI	GCNGC	6 cut(s)	46, 145, 148, 297, 916, 1051
PscI	ACATGT	1 cut(s)	1025
PsiI	TTATAA	2 cut(s)	812, 938
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	1110
PspFI	CCCAGC	1 cut(s)	961
PspGI	CCWGG	1 cut(s)	1110
PspN4I	GGNNCC	3 cut(s)	642, 700, 798
PspPI	GGNCC	4 cut(s)	646, 797, 1108, 1133
PvuII	CAGCTG	1 cut(s)	965
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	528, 780, 1080
SatI	GCNGC	6 cut(s)	45, 144, 147, 296, 915, 1050
Sau3AI	GATC	1 cut(s)	941
Sau96I	GGNCC	4 cut(s)	646, 797, 1108, 1133
ScrFI	CCNGG	2 cut(s)	645, 1112
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	901, 1073
SfcI	CTRYAG	2 cut(s)	135, 1095
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	1 cut(s)	1108
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	9 cut(s)	83, 496, 509, 625, 655, 726, 1017, 1038, 1152
SspMI	CTAG	2 cut(s)	323, 1061
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	643, 1110
StyI	CCWWGG	2 cut(s)	649, 674
TaaI	ACNGT	4 cut(s)	24, 67, 136, 1099
TaiI	ACGT	2 cut(s)	312, 317
TaqI	TCGA	3 cut(s)	169, 372, 905
TasI	AATT	9 cut(s)	83, 496, 509, 625, 655, 726, 1017, 1038, 1152
TfiI	GAWTC	3 cut(s)	258, 369, 968
Tru1I	TTAA	3 cut(s)	528, 780, 1080
Tru9I	TTAA	3 cut(s)	528, 780, 1080
TscAI	CASTG	4 cut(s)	27, 613, 1002, 1104
TseFI	GTSAC	2 cut(s)	244, 310
TseI	GCWGC	6 cut(s)	44, 143, 146, 295, 914, 1049
Tsp45I	GTSAC	2 cut(s)	244, 310
TspDTI	ATGAA	5 cut(s)	42, 250, 287, 418, 534
TspGWI	ACGGA	1 cut(s)	1111
TspRI	CASTG	4 cut(s)	27, 613, 1002, 1104
VpaK11BI	GGWCC	1 cut(s)	1108
XapI	RAATTY	3 cut(s)	83, 509, 655
XceI	RCATGY	1 cut(s)	1029
XspI	CTAG	2 cut(s)	323, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.