Rorug05G0238000

aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
25054128 .. 25055483
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0238000.1

Sequence Viewer

Length: 1356 bp
ATGGATAAATCATGGATGGAAGCTGACCGAAGAAGTCTTGTGTATGAGGAAGGAGTTGAAATGTTTTTGAAGTTTGCTGCATCAAATGCATCTAATCCTAATTTTTTGTTATGTCCTTGCACAAAATGTGGGAGCACAAAAAAAAAGACAGTCAAAACTATTAGGGAGCATTTGTATTATAATGGTTTTAATCAAAGCTACAAGAACTGGATATGGCATGGTCAACCTCCAAGGTCATCTTGTCCAAGTCCAAGTAAAAATGTAGAAACAAGACAAGAAAGTCAATTTGTGTCTGAAACAGTAGATATGTGTGAAGCTGCATGTGATGAGTTTGGTGGTGATTTAGATGAGTTTTATAAGTTCGTTGAGGATGCAGATCAAGAATTATATGAGGGTTGTCATAAACACACAAAGTTATCCACCTTGGTATCCCTTTATAATAAGAAAGCTAAGTATGGGTTGAGTGACATAAGCTTTTCAGATTTGCTTGTAACAATTGCAGATTTACTTCCAAGTGGTAATGTTCTACCCTCATCTTTATATGAGGCAAAGAAGACTTTGTCCTCATTAGGAATGGATTACGTGAAAATACATGCGTGTCCGAATGATTGTATTTTATATAGAAATGAATATGATGATGCCACAAACTGTCCTAAGTGTGGTGTCTCTAGGTGGAAGGTTATGAAGGATTTAAAGGAGAAAAAAGGAGTGCCAGCAAAGGTGTTGTGGTATTTTTCGCCAATCCCAAGATTTAAACGAATGTTTAGATCTCATGAGACGGCTAAAGATTTAACTTGGCATGATGACGAAAGAGTGAATGACGGTAAAATGCGTCATCCTGCTGATTCTCCGTGTTGGAGGTTGGTAGACCATAAATGGCCTGAATTTGCAAGTGAGCCAAGGAATCTCAGGTTAGCTCTTTCAGCTAATGGTATAAATCCTTACAGCTCTTTAAGTAGTAGGTACAGTTGTTGGCCAGTTATATTGGTGACCTATAACCTTCCTCCCTCGTTGTGTATGAAACGAAAGTTCATGATGTTAACTTTATTGATTTTCGGTCCGAAACAGCCCGGGAATAATATAGATGTTTATTTGGCACCTTTGATTGACGATTTGAAATTATTGTGGAAAGGAATTGATGGAGTATATGATGCTTATAGAGAAGATATATTCACACTAAAAGCTGTTTTGTTATGGACTATTAACGACTTTCCAGCTTACGGTAACTTATCAGGGTGCACAGTAAAGGGGTATAAAACATGTCCAATATGTGGAGATCAAACATATGCTATAAGGCTAAGTCATGGTAATAAAATGTCCACAAGTTTATATAGAAAAATGCACAAGTTGGATTAG

Protein Analysis

451

Amino Acids

51.67

Weight (kDa)

8.5

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 74 4.5e-20 Transposase-associated domain
Transposase_21 PF02992 274 - 446 3.8e-73 Transposase family tnp2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis pycom03g10930 pycom11g14730
rosa_chinensis RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 180, 357, 438
AasI GACNNNNNNGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 1096
AccB7I CCANNNNNTGG 1 cut(s) 1271
AccI GTMKAC 1 cut(s) 867
AcoI YGGCCR 1 cut(s) 974
AcsI RAATTY 1 cut(s) 884
AfaI GTAC 1 cut(s) 965
AfiI CCNNNNNNNGG 3 cut(s) 659, 1220, 1271
AflIII ACRYGT 1 cut(s) 1259
AgsI TTSAA 3 cut(s) 59, 70, 1117
Alw21I GWGCWC 2 cut(s) 137, 1241
Alw26I GTCTC 2 cut(s) 670, 770
Alw44I GTGCAC 1 cut(s) 1237
Ama87I CYCGRG 1 cut(s) 1070
AoxI GGCC 2 cut(s) 878, 974
ApaLI GTGCAC 1 cut(s) 1237
ApeKI GCWGC 2 cut(s) 77, 317
ApoI RAATTY 1 cut(s) 884
AspS9I GGNCC 1 cut(s) 1058
AsuC2I CCSGG 2 cut(s) 1071, 1072
AsuHPI GGTGA 2 cut(s) 350, 1000
AvaI CYCGRG 1 cut(s) 1070
AvaII GGWCC 1 cut(s) 1058
BaeGI GKGCMC 1 cut(s) 1241
BaeI ACNNNNGTAYC 4 cut(s) 411, 444, 955, 988
BalI TGGCCA 1 cut(s) 976
BanI GGYRCC 1 cut(s) 1096
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 2 cut(s) 137, 1241
BbvI GCAGC 2 cut(s) 64, 304
BccI CCATC 2 cut(s) 10, 1133
BceAI ACGGC 1 cut(s) 795
BciVI GTATCC 1 cut(s) 439
BcnI CCSGG 2 cut(s) 1071, 1072
BcoDI GTCTC 2 cut(s) 670, 770
BfaI CTAG 1 cut(s) 669
BfuI GTATCC 1 cut(s) 439
BglII AGATCT 1 cut(s) 767
BisI GCNGC 2 cut(s) 78, 318
BlsI GCNGC 2 cut(s) 79, 319
Bme1390I CCNGG 2 cut(s) 1071, 1072
Bme18I GGWCC 1 cut(s) 1058
BmeT110I CYCGRG 1 cut(s) 1070
BmgT120I GGNCC 1 cut(s) 1058
BmiI GGNNCC 1 cut(s) 1098
BmrFI CCNGG 2 cut(s) 1071, 1072
BmsI GCATC 5 cut(s) 89, 98, 361, 628, 1141
BpiI GAAGAC 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 1071, 1072
BsaAI YACGTR 1 cut(s) 583
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 4 cut(s) 230, 423, 899, 1070
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 3 cut(s) 659, 1220, 1271
Bse1I ACTGG 2 cut(s) 212, 977
Bse8I GATNNNNATC 1 cut(s) 375
BseDI CCNNGG 4 cut(s) 230, 423, 899, 1070
BseGI GGATG 3 cut(s) 21, 376, 835
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 659, 1220, 1271
BseMII CTCAG 1 cut(s) 922
BseNI ACTGG 2 cut(s) 212, 977
BseSI GKGCMC 1 cut(s) 1241
BseXI GCAGC 2 cut(s) 64, 304
BshFI GGCC 2 cut(s) 880, 976
BshNI GGYRCC 1 cut(s) 1096
BsiHKAI GWGCWC 2 cut(s) 137, 1241
BsiHKCI CYCGRG 1 cut(s) 1070
BsiSI CCGG 1 cut(s) 1071
BslI CCNNNNNNNGG 3 cut(s) 659, 1220, 1271
BsmAI GTCTC 2 cut(s) 670, 770
BsmBI CGTCTC 1 cut(s) 770
BsnI GGCC 2 cut(s) 880, 976
BsoBI CYCGRG 1 cut(s) 1070
Bsp1286I GDGCHC 2 cut(s) 137, 1241
Bsp143I GATC 3 cut(s) 376, 767, 1276
BspANI GGCC 2 cut(s) 880, 976
BspCNI CTCAG 1 cut(s) 921
BspHI TCATGA 2 cut(s) 772, 1032
BspLI GGNNCC 1 cut(s) 1098
BspT107I GGYRCC 1 cut(s) 1096
BsrI ACTGG 2 cut(s) 212, 977
BssECI CCNNGG 4 cut(s) 230, 423, 899, 1070
BssMI GATC 3 cut(s) 376, 767, 1276
BssT1I CCWWGG 3 cut(s) 230, 423, 899
Bst4CI ACNGT 7 cut(s) 151, 301, 650, 824, 968, 1223, 1243
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 4 cut(s) 450, 654, 908, 1298
BstEII GGTNACC 1 cut(s) 988
BstF5I GGATG 3 cut(s) 21, 376, 835
BstKTI GATC 3 cut(s) 379, 770, 1279
BstMAI GTCTC 2 cut(s) 670, 770
BstMBI GATC 3 cut(s) 376, 767, 1276
BstMWI GCNNNNNNNGC 2 cut(s) 86, 923
BstNSI RCATGY 3 cut(s) 324, 596, 1263
BstPI GGTNACC 1 cut(s) 988
BstSCI CCNGG 2 cut(s) 1069, 1070
BstSLI GKGCMC 1 cut(s) 1241
BstV1I GCAGC 2 cut(s) 64, 304
BstV2I GAAGAC 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 2 cut(s) 880, 976
BtsCI GGATG 3 cut(s) 21, 376, 835
Cac8I GCNNGC 1 cut(s) 714
CciI TCATGA 2 cut(s) 772, 1032
Cfr13I GGNCC 1 cut(s) 1058
Cfr9I CCCGGG 1 cut(s) 1070
CpoI CGGWCCG 1 cut(s) 1058
CseI GACGC 1 cut(s) 821
Csp6I GTAC 1 cut(s) 964
CspI CGGWCCG 1 cut(s) 1058
CviAII CATG 9 cut(s) 12, 218, 321, 593, 773, 800, 1033, 1260, 1304
CviQI GTAC 1 cut(s) 964
DdeI CTNAG 4 cut(s) 450, 654, 908, 1298
DpnI GATC 3 cut(s) 378, 769, 1278
DpnII GATC 3 cut(s) 376, 767, 1276
DraI TTTAAA 2 cut(s) 693, 754
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 974
Eco130I CCWWGG 3 cut(s) 230, 423, 899
Eco47I GGWCC 1 cut(s) 1058
Eco88I CYCGRG 1 cut(s) 1070
Eco91I GGTNACC 1 cut(s) 988
EcoO65I GGTNACC 1 cut(s) 988
EcoT14I CCWWGG 3 cut(s) 230, 423, 899
EcoT22I ATGCAT 1 cut(s) 91
ErhI CCWWGG 3 cut(s) 230, 423, 899
Esp3I CGTCTC 1 cut(s) 770
FaeI CATG 9 cut(s) 15, 221, 324, 596, 776, 803, 1036, 1263, 1307
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FatI CATG 9 cut(s) 11, 217, 320, 592, 772, 799, 1032, 1259, 1303
FauNDI CATATG 1 cut(s) 1285
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 2 cut(s) 78, 318
FokI GGATG 3 cut(s) 28, 383, 822
Fsp4HI GCNGC 2 cut(s) 78, 318
FspBI CTAG 1 cut(s) 669
GluI GCNGC 2 cut(s) 78, 318
HaeIII GGCC 2 cut(s) 880, 976
HapII CCGG 1 cut(s) 1071
HgaI GACGC 1 cut(s) 821
Hin1II CATG 9 cut(s) 15, 221, 324, 596, 776, 803, 1036, 1263, 1307
HincII GTYRAC 2 cut(s) 224, 1041
HindII GTYRAC 2 cut(s) 224, 1041
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 2 cut(s) 845, 904
HpaI GTTAAC 1 cut(s) 1041
HpaII CCGG 1 cut(s) 1071
HphI GGTGA 2 cut(s) 350, 1000
Hpy166II GTNNAC 5 cut(s) 224, 868, 1041, 1239, 1320
Hpy188I TCNGA 4 cut(s) 295, 481, 603, 1062
Hpy188III TCNNGA 3 cut(s) 380, 773, 1033
Hpy8I GTNNAC 5 cut(s) 224, 868, 1041, 1239, 1320
HpyAV CCTTC 4 cut(s) 44, 670, 679, 1010
HpyCH4III ACNGT 7 cut(s) 151, 301, 650, 824, 968, 1223, 1243
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 9 cut(s) 80, 89, 120, 320, 374, 500, 890, 1239, 1342
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 923
HpyF3I CTNAG 4 cut(s) 450, 654, 908, 1298
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 9 cut(s) 15, 221, 324, 596, 776, 803, 1036, 1263, 1307
KspAI GTTAAC 1 cut(s) 1041
Kzo9I GATC 3 cut(s) 376, 767, 1276
LmnI GCTCC 2 cut(s) 132, 166
LpnPI CCDG 9 cut(s) 193, 726, 852, 894, 895, 990, 1084, 1218, 1227
Lsp1109I GCAGC 2 cut(s) 64, 304
LweI GCATC 5 cut(s) 89, 98, 361, 628, 1141
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 4 cut(s) 464, 490, 988, 1223
MalI GATC 3 cut(s) 378, 769, 1278
MboI GATC 3 cut(s) 376, 767, 1276
MboII GAAGA 3 cut(s) 42, 565, 1175
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 2 cut(s) 137, 1241
MlsI TGGCCA 1 cut(s) 976
MluCI AATT 7 cut(s) 100, 284, 383, 495, 884, 1118, 1134
MluNI TGGCCA 1 cut(s) 976
MmeI TCCRAC 2 cut(s) 836, 1329
Mox20I TGGCCA 1 cut(s) 976
Mph1103I ATGCAT 1 cut(s) 91
MscI TGGCCA 1 cut(s) 976
MseI TTAA 7 cut(s) 189, 692, 753, 791, 953, 1040, 1203
Msp20I TGGCCA 1 cut(s) 976
MspI CCGG 1 cut(s) 1071
MspR9I CCNGG 2 cut(s) 1071, 1072
MunI CAATTG 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 86, 923
NciI CCSGG 2 cut(s) 1071, 1072
NdeI CATATG 1 cut(s) 1285
NdeII GATC 3 cut(s) 376, 767, 1276
NlaIII CATG 9 cut(s) 15, 221, 324, 596, 776, 803, 1036, 1263, 1307
NlaIV GGNNCC 1 cut(s) 1098
NmuCI GTSAC 2 cut(s) 464, 988
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 3 cut(s) 324, 596, 1263
PagI TCATGA 2 cut(s) 772, 1032
PciI ACATGT 1 cut(s) 1259
PfeI GAWTC 2 cut(s) 845, 904
PflFI GACNNNGTC 1 cut(s) 559
PflMI CCANNNNNTGG 1 cut(s) 1271
PkrI GCNGC 2 cut(s) 79, 319
Ppu21I YACGTR 1 cut(s) 583
PscI ACATGT 1 cut(s) 1259
PsiI TTATAA 3 cut(s) 180, 357, 438
PspEI GGTNACC 1 cut(s) 988
PspN4I GGNNCC 1 cut(s) 1098
PspPI GGNCC 1 cut(s) 1058
PsuI RGATCY 1 cut(s) 767
PsyI GACNNNGTC 1 cut(s) 559
RsaI GTAC 1 cut(s) 965
RsaNI GTAC 1 cut(s) 964
Rsr2I CGGWCCG 1 cut(s) 1058
RsrII CGGWCCG 1 cut(s) 1058
SaqAI TTAA 7 cut(s) 189, 692, 753, 791, 953, 1040, 1203
SatI GCNGC 2 cut(s) 78, 318
Sau3AI GATC 3 cut(s) 376, 767, 1276
Sau96I GGNCC 1 cut(s) 1058
ScrFI CCNGG 2 cut(s) 1071, 1072
SduI GDGCHC 2 cut(s) 137, 1241
SfaNI GCATC 5 cut(s) 89, 98, 361, 628, 1141
SinI GGWCC 1 cut(s) 1058
SmaI CCCGGG 1 cut(s) 1072
Sse9I AATT 7 cut(s) 100, 284, 383, 495, 884, 1118, 1134
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 1069, 1070
StyI CCWWGG 3 cut(s) 230, 423, 899
TaaI ACNGT 7 cut(s) 151, 301, 650, 824, 968, 1223, 1243
TaiI ACGT 1 cut(s) 585
TaqII GACCGA 2 cut(s) 42, 1046
TasI AATT 7 cut(s) 100, 284, 383, 495, 884, 1118, 1134
TfiI GAWTC 2 cut(s) 845, 904
Tru1I TTAA 7 cut(s) 189, 692, 753, 791, 953, 1040, 1203
Tru9I TTAA 7 cut(s) 189, 692, 753, 791, 953, 1040, 1203
TseFI GTSAC 2 cut(s) 464, 988
TseI GCWGC 2 cut(s) 77, 317
Tsp45I GTSAC 2 cut(s) 464, 988
TspDTI ATGAA 4 cut(s) 642, 698, 1021, 1034
TspGWI ACGGA 1 cut(s) 840
TspMI CCCGGG 1 cut(s) 1070
Tth111I GACNNNGTC 1 cut(s) 559
Van91I CCANNNNNTGG 1 cut(s) 1271
VneI GTGCAC 1 cut(s) 1237
VpaK11BI GGWCC 1 cut(s) 1058
XapI RAATTY 1 cut(s) 884
XceI RCATGY 3 cut(s) 324, 596, 1263
XmaI CCCGGG 1 cut(s) 1070
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 1 cut(s) 669
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.