Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Forward (+)

25021257 .. 25022234

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAAAATCCGATCAAAAACAGAAGCAGCGCCACGAGCAAAACATATTGTTACCTCAACAACAACAACAACAACAACAACAACATAAGCAAGGCTACTCCGATCATGTCTGTCGAGATCGAGTTCAGGCTCAACCTCAGAGCAAAGTACAAGCAGGTCTAATTAGAGAAGTAGACCAGGAGGTGAAGTTAGCTGCCACCGCAATCAGCCTCAACGTACGGTTGAGATCATCGTCCAACATGCCGCACCACATGCAAGACCGTGCTCTCCGCCGCACCAGATCACTCATCGACTCAGCCGCCGCCGCAGCAAAAGCACTATCCTCCAAACCACGGCCAAACCCAACTCATCTAGCTCGAGCTCTCAAAAAGGAGTTTGACTCGTTGTACGGACCGGCGTGGCACTGCGTGGTGGGAAAGAGTTTCGGGTCGTTCGTGACTCACTCGCCGGGTGGCTTCCTCTATTTTTCTATCGACGACTCGCTGTCGGTGCTGCTCTTTAAGACGGAGGTTCAGTTGGTCGCCGAACAACAACCACGGAAACCGGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

184

Amino Acids

20.76

Weight (kDa)

9.9

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	78 - 169	6.6e-25	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	7 cut(s)	201, 245, 271, 274, 300, 303, 306
AcoI	YGGCCR	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	409
AfaI	GTAC	3 cut(s)	150, 219, 389
AfiI	CCNNNNNNNGG	1 cut(s)	333
AhdI	GACNNNNNGTC	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	3 cut(s)	194, 356, 362
AluI	AGCT	3 cut(s)	194, 356, 362
Alw21I	GWGCWC	2 cut(s)	268, 364
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	4 cut(s)	28, 194, 308, 493
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	364
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	268, 364
BbvI	GCAGC	4 cut(s)	40, 181, 320, 480
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	450
BfaI	CTAG	1 cut(s)	353
BfoI	RGCGCY	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	9 cut(s)	29, 195, 245, 274, 300, 303, 306, 309, 494
BlsI	GCNGC	9 cut(s)	30, 196, 246, 275, 301, 304, 307, 310, 495
Bme1390I	CCNGG	2 cut(s)	179, 450
Bme18I	GGWCC	1 cut(s)	392
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	392
BmrFI	CCNGG	2 cut(s)	179, 450
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpuMI	CCSGG	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	332, 536
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 500, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse118I	RCCGGY	2 cut(s)	394, 544
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	332, 536
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	152, 309
BseXI	GCAGC	4 cut(s)	40, 181, 320, 480
BshFI	GGCC	1 cut(s)	337
BsiHKAI	GWGCWC	2 cut(s)	268, 364
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	395, 449, 545
BsiWI	CGTACG	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	333
BsnI	GGCC	1 cut(s)	337
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	268, 364
Bsp143I	GATC	5 cut(s)	13, 103, 118, 227, 281
BspACI	CCGC	7 cut(s)	201, 245, 271, 274, 300, 303, 306
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	151, 308
BspMI	ACCTGC	1 cut(s)	146
BsrFI	RCCGGY	2 cut(s)	394, 544
BssAI	RCCGGY	2 cut(s)	394, 544
BssECI	CCNNGG	2 cut(s)	332, 536
BssMI	GATC	5 cut(s)	13, 103, 118, 227, 281
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	222, 263
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	138, 295
BstDSI	CCRYGG	2 cut(s)	332, 536
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	5 cut(s)	16, 106, 121, 230, 284
BstMBI	GATC	5 cut(s)	13, 103, 118, 227, 281
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 200, 253, 305, 308, 314, 490
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	244, 256
BstSCI	CCNGG	2 cut(s)	177, 448
BstV1I	GCAGC	4 cut(s)	40, 181, 320, 480
BsuRI	GGCC	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	332, 536
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	2 cut(s)	394, 544
Cfr13I	GGNCC	1 cut(s)	392
CpoI	CGGWCCG	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	149, 218, 388
CspI	CGGWCCG	1 cut(s)	392
CviAII	CATG	3 cut(s)	107, 241, 253
CviJI	RGCY	9 cut(s)	96, 131, 194, 210, 299, 337, 356, 362, 456
CviKI_1	RGCY	9 cut(s)	96, 131, 194, 210, 299, 337, 356, 362, 456
CviQI	GTAC	3 cut(s)	149, 218, 388
DdeI	CTNAG	2 cut(s)	138, 295
DpnI	GATC	5 cut(s)	15, 105, 120, 229, 283
DpnII	GATC	5 cut(s)	13, 103, 118, 227, 281
DraIII	CACNNNGTG	1 cut(s)	409
DriI	GACNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	335
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	3 cut(s)	110, 244, 256
FaiI	YATR	5 cut(s)	47, 87, 108, 242, 254
FatI	CATG	3 cut(s)	106, 240, 252
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	9 cut(s)	29, 195, 245, 274, 300, 303, 306, 309, 494
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	9 cut(s)	29, 195, 245, 274, 300, 303, 306, 309, 494
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	9 cut(s)	29, 195, 245, 274, 300, 303, 306, 309, 494
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	3 cut(s)	395, 449, 545
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	110, 244, 256
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	293, 380, 439, 479
HpaII	CCGG	3 cut(s)	395, 449, 545
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	13, 103, 141
Hpy188III	TCNNGA	2 cut(s)	116, 436
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	479
HpyCH4III	ACNGT	2 cut(s)	222, 263
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 200, 253, 305, 308, 314, 490
HpyF3I	CTNAG	2 cut(s)	138, 295
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	110, 244, 256
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	13, 103, 118, 227, 281
LpnPI	CCDG	7 cut(s)	113, 141, 164, 191, 292, 408, 462
Lsp1109I	GCAGC	4 cut(s)	40, 181, 320, 480
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	51, 436
MalI	GATC	5 cut(s)	15, 105, 120, 229, 283
MboI	GATC	5 cut(s)	13, 103, 118, 227, 281
MhlI	GDGCHC	2 cut(s)	268, 364
MluCI	AATT	2 cut(s)	162, 550
MlyI	GAGTC	4 cut(s)	287, 374, 433, 473
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	7 cut(s)	66, 147, 175, 221, 334, 470, 502
MseI	TTAA	1 cut(s)	501
MspI	CCGG	3 cut(s)	395, 449, 545
MspR9I	CCNGG	2 cut(s)	179, 450
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	7 cut(s)	37, 200, 253, 305, 308, 314, 490
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	5 cut(s)	13, 103, 118, 227, 281
NlaIII	CATG	3 cut(s)	110, 244, 256
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	2 cut(s)	244, 256
PaeR7I	CTCGAG	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
Pfl23II	CGTACG	1 cut(s)	217
PkrI	GCNGC	9 cut(s)	30, 196, 246, 275, 301, 304, 307, 310, 495
PleI	GAGTC	4 cut(s)	287, 374, 433, 473
PpsI	GAGTC	4 cut(s)	287, 374, 433, 473
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspLI	CGTACG	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	392
PspXI	VCTCGAGB	1 cut(s)	357
RsaI	GTAC	3 cut(s)	150, 219, 389
RsaNI	GTAC	3 cut(s)	149, 218, 388
Rsr2I	CGGWCCG	1 cut(s)	392
RsrII	CGGWCCG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	9 cut(s)	29, 195, 245, 274, 300, 303, 306, 309, 494
Sau3AI	GATC	5 cut(s)	13, 103, 118, 227, 281
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	4 cut(s)	287, 374, 433, 473
ScrFI	CCNGG	2 cut(s)	179, 450
SduI	GDGCHC	2 cut(s)	268, 364
SetI	ASST	9 cut(s)	58, 139, 160, 186, 196, 219, 358, 364, 513
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	2 cut(s)	162, 550
SsiI	CCGC	7 cut(s)	201, 245, 271, 274, 300, 303, 306
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	2 cut(s)	177, 448
TaaI	ACNGT	2 cut(s)	222, 263
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	5 cut(s)	115, 121, 291, 358, 474
TasI	AATT	2 cut(s)	162, 550
TatI	WGTACW	1 cut(s)	148
TauI	GCSGC	5 cut(s)	247, 276, 302, 305, 308
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	4 cut(s)	28, 194, 308, 493
Tsp45I	GTSAC	1 cut(s)	436
TspGWI	ACGGA	3 cut(s)	405, 521, 553
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	392
XceI	RCATGY	2 cut(s)	244, 256
XhoI	CTCGAG	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.