Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002563.1

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Reverse (-)

156522 .. 157975

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002563.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgtgggctattctgactattgtggtcgtttttgaatttactgttgtagctgcttctcttggcattggagctcatcgattagcaaatctttcgggcgatcaaggagagccaatacttattgctctctttatcttcgtagaagctggaatagtgacattctttagatttattccccaaatgaaggcaagatacgattatgggctgctgatattcaacttgacattctgccttaatatcggtgtccggttatcgcgacgaggaggttatacgattaggattcgagaggtatggattggggtggaacttcacaatcagattgctaccaacatggaaaagcttgccaatttcttagaaggtggccggaaatttccgccggagttagaggcagagacgccgccgaccaccaccaatggcgtcaggcctctccgctgttcaaggatgccactggaagctgagaaaggccgaggtgagcactatggaagtgttctggcgtcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

165

Amino Acids

18.4

Weight (kDa)

8.68

Isoelectric Point (pI)

27.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	253
AciI	CCGC	3 cut(s)	371, 395, 427
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	35, 365
AcyI	GRCGYC	3 cut(s)	392, 414, 491
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	35, 214, 435
AluBI	AGCT	5 cut(s)	50, 71, 143, 337, 452
AluI	AGCT	5 cut(s)	50, 71, 143, 337, 452
Alw21I	GWGCWC	2 cut(s)	73, 474
Alw26I	GTCTC	1 cut(s)	383
AoxI	GGCC	3 cut(s)	358, 419, 460
ApeKI	GCWGC	2 cut(s)	50, 202
ApoI	RAATTY	2 cut(s)	35, 365
AsuHPI	GGTGA	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	73
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
Bbv12I	GWGCWC	2 cut(s)	73, 474
BbvI	GCAGC	2 cut(s)	37, 189
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BcoDI	GTCTC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	51, 203, 395
BlsI	GCNGC	3 cut(s)	52, 204, 396
BmsI	GCATC	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	76
BsaHI	GRCGYC	3 cut(s)	392, 414, 491
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	37, 189
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	360, 421, 462
BshVI	ATCGAT	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	73, 474
BsiSI	CCGG	3 cut(s)	244, 361, 374
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	360, 421, 462
Bsp1286I	GDGCHC	2 cut(s)	73, 474
Bsp143I	GATC	1 cut(s)	97
Bsp68I	TCGCGA	1 cut(s)	253
BspACI	CCGC	3 cut(s)	371, 395, 427
BspANI	GGCC	3 cut(s)	360, 421, 462
BspCNI	CTCAG	1 cut(s)	445
BspDI	ATCGAT	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	1 cut(s)	97
BssNI	GRCGYC	3 cut(s)	392, 414, 491
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	3 cut(s)	392, 414, 491
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	349, 453
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	37, 189
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	3 cut(s)	360, 421, 462
BsuTUI	ATCGAT	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	443
BtuMI	TCGCGA	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	76
CseI	GACGC	3 cut(s)	400, 403, 480
CviAII	CATG	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	349, 453
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	358
EciI	GGCGGA	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	198, 267, 289, 329, 477
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	51, 203, 395
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	51, 203, 395
GluI	GCNGC	3 cut(s)	51, 203, 395
HaeIII	GGCC	3 cut(s)	360, 421, 462
HapII	CCGG	3 cut(s)	244, 361, 374
HgaI	GACGC	3 cut(s)	400, 403, 480
Hin1I	GRCGYC	3 cut(s)	392, 414, 491
Hin1II	CATG	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	244, 361, 374
HphI	GGTGA	1 cut(s)	479
Hpy188I	TCNGA	2 cut(s)	15, 315
Hpy188III	TCNNGA	3 cut(s)	252, 281, 495
Hpy99I	CGWCG	2 cut(s)	258, 496
HpyAV	CCTTC	2 cut(s)	175, 347
HpyCH4III	ACNGT	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	349, 453
Hsp92I	GRCGYC	3 cut(s)	392, 414, 491
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	7 cut(s)	129, 257, 374, 387, 403, 431, 473
Lsp1109I	GCAGC	2 cut(s)	37, 189
LweI	GCATC	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	73, 474
MluCI	AATT	3 cut(s)	35, 343, 365
MnlI	CCTC	6 cut(s)	251, 254, 277, 376, 432, 458
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	429
MspI	CCGG	3 cut(s)	244, 361, 374
MvnI	CGCG	1 cut(s)	253
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	331
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	151
NruI	TCGCGA	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	52, 204, 396
Psp124BI	GAGCTC	1 cut(s)	73
RruI	TCGCGA	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	51, 203, 395
Sau3AI	GATC	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	73, 474
SetI	ASST	9 cut(s)	52, 73, 145, 265, 288, 339, 358, 454, 469
SfaNI	GCATC	1 cut(s)	429
Sse9I	AATT	3 cut(s)	35, 343, 365
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	3 cut(s)	371, 395, 427
SstI	GAGCTC	1 cut(s)	73
StuI	AGGCCT	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	76, 280
TasI	AATT	3 cut(s)	35, 343, 365
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	50, 202
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	450
XapI	RAATTY	2 cut(s)	35, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.