Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Reverse (-)

46593463 .. 46596652

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG317100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGACTTCTGCAGATTTTGTTGATACGGAGAACAGCAGCTGCGGCGGAGAGCCTTTCGGTCAAGTGGTGCGGTGGCTGAAGGCGGTGCTGGAGAGATCATGGGGTAAGGTGCTGGAGGCGGCGAGGGAGGCGAAGAAGCTCGGGGAGGATGATCCGAGAAGGATTGTGCATTCGTTCAAAGTAGGGTTGGCTCTGACGTTGGTGTCTCTTTTTTATTACTATCGACCGCTTTATGATGGCTTAGGTGACGATGCAATGTGGGCTGTCTTGACCGTGGTCGTTGTCTTTGAGTTCTCGGTTGGAGCAACCCTAGGGAAGGGTATAAATAGGATGTTGGCAACGTTACTAGCTGGTGCTCTAGCTGTTGGAGTTCATCAGATATCAACTCTTTGGGGAGGAGAAGTCGGGGAGCCCATATTGATTGCATTTTTTGTCTTCGTTGTAGCTGCAAGTGTGACCTTCATGCGATTCTTCCCCGCATTGAAGGCAAGGTATGACTACGGGCTGTTGATATTCACACTGACCTTCTGCTTGGTTTCGGTATCTGGCTACCGCGACACTCAGGTACTAGATATGGCACACAAGAGGCTATCAACGATTGCGATAGGAAGCTGTACTTCTATTATGGTTTGTATTTTCATCTGCCCTGTGTGGATTGGAGTTGATCTCCACAATTTGGTTGCTGGTAACATGGAAAATATTGGGGTCTTTATGGAAGGATTTGGATTTGAATACTTTGACATAAAAGGGAATGGGTTGTCATTAAGTAATCAGCAATATAAAAGTGTTCTTTCATCAAAAAGCCTTGAAGAAACCATGGTTAACTTGGCAAGATGGGAACCAGGTCATGGCGGGTTCAAGTTCGGCCACCCATGGGAGAAGTATTTGAATGTTGGAAGCCAAACTCGGCAATGTGCTTATAAAATTGAAGCTCTGAACACTTACCTGAACACTGATATCCAAGTGCCCGCTGAAATTCGAAGCAAAATTCTTCAAGAACCATGCATAAATATTTGCACTGAATCCGGAAAAGCATTGAAGGAATTAGCAGCAGCCCTCAAGAAAATGACTCGGTCATCATCAGCTGATTCCCACATTGCATGCTCAAAAGCAGCAGTTGAGAGCCTCAAGTTATTGTCACTCAAAAGAGGCATATGGAAAGATGCTAATCTGCTGGAAACAATACCATCTGCTGCGGTGGCGTCACTTCTTATTGAAGTCGTAGCTTGTGTTGAGAAGATTGCTGAAGCAGTTCACGAACTAGCATCCGTCGCACATTTCAAGACTGAACAGCCACAATTACTTCAGGAGCCAGCGCTTTCTGAAGAATATCATGTTACTATTACAATTGATCGTAATTCAACTGAGGGGCTACCCAAAAATGGAAGTTCAGATGGCATCACTACTAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

471

Amino Acids

51.56

Weight (kDa)

5.98

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	46 - 377	6.1e-136	Aluminium activated malate transporter
FUSC_2	PF13515	70 - 210	8.8e-10	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AasI	GACNNNNNNGTC	1 cut(s)	202
AccB7I	CCANNNNNTGG	2 cut(s)	676, 848
AccII	CGCG	1 cut(s)	555
AccIII	TCCGGA	1 cut(s)	1025
AclI	AACGTT	1 cut(s)	341
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	2 cut(s)	975, 987
AcuI	CTGAAG	4 cut(s)	98, 1266, 1289, 1344
AcyI	GRCGYC	1 cut(s)	1202
AfaI	GTAC	2 cut(s)	567, 616
AfeI	AGCGCT	1 cut(s)	1317
AfiI	CCNNNNNNNGG	5 cut(s)	316, 676, 848, 874, 1382
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	9 cut(s)	39, 139, 350, 362, 446, 612, 932, 1085, 1226
AluI	AGCT	9 cut(s)	39, 139, 350, 362, 446, 612, 932, 1085, 1226
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	146
AlwNI	CAGNNNCTG	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	1025
Aor51HI	AGCGCT	1 cut(s)	1317
AoxI	GGCC	1 cut(s)	865
ApeKI	GCWGC	7 cut(s)	36, 39, 446, 1049, 1052, 1112, 1193
ApoI	RAATTY	2 cut(s)	975, 987
Asp700I	GAANNNNTTC	1 cut(s)	1251
AspA2I	CCTAGG	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	1318
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	979
AvaI	CYCGRG	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	969
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	7 cut(s)	26, 48, 433, 1061, 1064, 1124, 1180
BccI	CCATC	4 cut(s)	230, 828, 1195, 1388
BciT130I	CCWGG	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	5 cut(s)	311, 347, 359, 569, 1262
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	1319
BisI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1050, 1053, 1113, 1194
BlnI	CCTAGG	1 cut(s)	310
BlsI	GCNGC	9 cut(s)	38, 41, 44, 121, 448, 1051, 1054, 1114, 1195
Bme1390I	CCNGG	1 cut(s)	843
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	411, 840, 1311
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	4 cut(s)	241, 1153, 1274, 1407
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	427
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpmI	CTGGAG	2 cut(s)	110, 134
Bpu10I	CCTNAGC	1 cut(s)	241
Bpu14I	TTCGAA	1 cut(s)	979
BpuEI	CTTGAG	2 cut(s)	1043, 1112
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaHI	GRCGYC	1 cut(s)	1202
BsaJI	CCNNGG	4 cut(s)	273, 310, 816, 872
BsaWI	WCCGGW	1 cut(s)	1025
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 676, 848, 874, 1382
Bse3DI	GCAATG	3 cut(s)	261, 917, 1095
Bse8I	GATNNNNATC	1 cut(s)	1167
BseAI	TCCGGA	1 cut(s)	1025
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	4 cut(s)	273, 310, 816, 872
BseGI	GGATG	3 cut(s)	154, 336, 1265
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	5 cut(s)	316, 676, 848, 874, 1382
BseMI	GCAATG	3 cut(s)	261, 917, 1095
BseMII	CTCAG	2 cut(s)	575, 1356
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	969
BseXI	GCAGC	7 cut(s)	26, 48, 433, 1061, 1064, 1124, 1180
Bsh1236I	CGCG	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	867
BsiEI	CGRYCG	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	1026
BslI	CCNNNNNNNGG	5 cut(s)	316, 676, 848, 874, 1382
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	867
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	979
Bsp1286I	GDGCHC	3 cut(s)	358, 414, 969
Bsp13I	TCCGGA	1 cut(s)	1025
Bsp143I	GATC	4 cut(s)	95, 151, 664, 1351
Bsp19I	CCATGG	2 cut(s)	816, 872
BspANI	GGCC	1 cut(s)	867
BspCNI	CTCAG	2 cut(s)	574, 1357
BspEI	TCCGGA	1 cut(s)	1025
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	3 cut(s)	411, 840, 1311
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	979
BsrDI	GCAATG	3 cut(s)	261, 917, 1095
BssECI	CCNNGG	4 cut(s)	273, 310, 816, 872
BssMI	GATC	4 cut(s)	95, 151, 664, 1351
BssNI	GRCGYC	1 cut(s)	1202
BssT1I	CCWWGG	3 cut(s)	310, 816, 872
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	1202
BstBI	TTCGAA	1 cut(s)	979
BstC8I	GCNNGC	3 cut(s)	969, 1102, 1314
BstDEI	CTNAG	3 cut(s)	241, 561, 1365
BstDSI	CCRYGG	3 cut(s)	273, 816, 872
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	3 cut(s)	154, 336, 1265
BstFNI	CGCG	1 cut(s)	555
BstH2I	RGCGCY	1 cut(s)	1319
BstHHI	GCGC	1 cut(s)	1318
BstKTI	GATC	4 cut(s)	98, 154, 667, 1354
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	4 cut(s)	95, 151, 664, 1351
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 128, 260, 485, 1199, 1271
BstNI	CCWGG	1 cut(s)	843
BstNSI	RCATGY	1 cut(s)	1104
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	969
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	7 cut(s)	26, 48, 433, 1061, 1064, 1124, 1180
BstV2I	GAAGAC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	867
BtgI	CCRYGG	3 cut(s)	273, 816, 872
BtsCI	GGATG	3 cut(s)	154, 336, 1265
BtsIMutI	CAGTG	3 cut(s)	518, 951, 1017
Cac8I	GCNNGC	3 cut(s)	969, 1102, 1314
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	1318
CseI	GACGC	1 cut(s)	1191
CsiI	ACCWGGT	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	566, 615
CviAII	CATG	9 cut(s)	99, 463, 691, 817, 848, 873, 1002, 1101, 1334
CviQI	GTAC	2 cut(s)	566, 615
DdeI	CTNAG	3 cut(s)	241, 561, 1365
DpnI	GATC	4 cut(s)	97, 153, 666, 1353
DpnII	GATC	4 cut(s)	95, 151, 664, 1351
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	865
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	3 cut(s)	310, 816, 872
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	2 cut(s)	381, 958
Eco47III	AGCGCT	1 cut(s)	1317
Eco57I	CTGAAG	4 cut(s)	98, 1266, 1289, 1344
Eco88I	CYCGRG	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	841
EcoRV	GATATC	2 cut(s)	381, 958
EcoT14I	CCWWGG	3 cut(s)	310, 816, 872
EcoT22I	ATGCAT	1 cut(s)	1007
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	3 cut(s)	310, 816, 872
FaeI	CATG	9 cut(s)	102, 466, 694, 820, 851, 876, 1005, 1104, 1337
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FatI	CATG	9 cut(s)	98, 462, 690, 816, 847, 872, 1001, 1100, 1333
FauI	CCCGC	3 cut(s)	484, 845, 976
FauNDI	CATATG	1 cut(s)	1154
Fnu4HI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1050, 1053, 1113, 1194
FokI	GGATG	3 cut(s)	161, 343, 1252
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1050, 1053, 1113, 1194
FspBI	CTAG	5 cut(s)	311, 347, 359, 569, 1262
GlaI	GCGC	1 cut(s)	1317
GluI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1050, 1053, 1113, 1194
GsuI	CTGGAG	2 cut(s)	110, 134
HaeII	RGCGCY	1 cut(s)	1319
HaeIII	GGCC	1 cut(s)	867
HapII	CCGG	1 cut(s)	1026
HgaI	GACGC	1 cut(s)	1191
HhaI	GCGC	1 cut(s)	1318
Hin1I	GRCGYC	1 cut(s)	1202
Hin1II	CATG	9 cut(s)	102, 466, 694, 820, 851, 876, 1005, 1104, 1337
Hin6I	GCGC	1 cut(s)	1316
HinP1I	GCGC	1 cut(s)	1316
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	4 cut(s)	468, 1022, 1069, 1088
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	1026
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	823, 1255
Hpy188I	TCNGA	6 cut(s)	156, 195, 378, 936, 1324, 1393
Hpy188III	TCNNGA	7 cut(s)	268, 995, 1026, 1060, 1256, 1282, 1307
Hpy8I	GTNNAC	2 cut(s)	823, 1255
Hpy99I	CGWCG	1 cut(s)	1274
HpyAV	CCTTC	8 cut(s)	73, 153, 310, 469, 478, 535, 710, 1033
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	197, 341
HpyCH4V	TGCA	8 cut(s)	11, 169, 254, 425, 449, 1005, 1017, 1100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 128, 260, 485, 1199, 1271
HpyF3I	CTNAG	3 cut(s)	241, 561, 1365
HpySE526I	ACGT	2 cut(s)	197, 341
Hsp92I	GRCGYC	1 cut(s)	1202
Hsp92II	CATG	9 cut(s)	102, 466, 694, 820, 851, 876, 1005, 1104, 1337
HspAI	GCGC	1 cut(s)	1316
Kpn2I	TCCGGA	1 cut(s)	1025
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	4 cut(s)	95, 151, 664, 1351
LmnI	GCTCC	3 cut(s)	302, 409, 1309
Lsp1109I	GCAGC	7 cut(s)	26, 48, 433, 1061, 1064, 1124, 1180
LweI	GCATC	4 cut(s)	241, 1153, 1274, 1407
MabI	ACCWGGT	1 cut(s)	841
MaeI	CTAG	5 cut(s)	311, 347, 359, 569, 1262
MaeII	ACGT	2 cut(s)	197, 341
MaeIII	GTNAC	7 cut(s)	245, 342, 454, 686, 1137, 1203, 1336
MalI	GATC	4 cut(s)	97, 153, 666, 1353
MboI	GATC	4 cut(s)	95, 151, 664, 1351
MboII	GAAGA	7 cut(s)	145, 427, 463, 821, 983, 1249, 1337
MfeI	CAATTG	1 cut(s)	1347
MhlI	GDGCHC	3 cut(s)	358, 414, 969
MluCI	AATT	8 cut(s)	673, 924, 975, 987, 1043, 1298, 1347, 1357
MlyI	GAGTC	1 cut(s)	1063
MmeI	TCCRAC	3 cut(s)	280, 346, 874
Mph1103I	ATGCAT	1 cut(s)	1007
MroI	TCCGGA	1 cut(s)	1025
MroXI	GAANNNNTTC	1 cut(s)	1251
MseI	TTAA	3 cut(s)	764, 822, 1414
MspA1I	CMGCKG	3 cut(s)	39, 971, 1085
MspI	CCGG	1 cut(s)	1026
MspR9I	CCNGG	1 cut(s)	843
MunI	CAATTG	1 cut(s)	1347
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	843
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	6 cut(s)	42, 128, 260, 485, 1199, 1271
NcoI	CCATGG	2 cut(s)	816, 872
NdeI	CATATG	1 cut(s)	1154
NdeII	GATC	4 cut(s)	95, 151, 664, 1351
NlaIII	CATG	9 cut(s)	102, 466, 694, 820, 851, 876, 1005, 1104, 1337
NlaIV	GGNNCC	3 cut(s)	411, 840, 1311
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	4 cut(s)	245, 454, 1137, 1203
NsiI	ATGCAT	1 cut(s)	1007
NspI	RCATGY	1 cut(s)	1104
NspV	TTCGAA	1 cut(s)	979
PaeI	GCATGC	1 cut(s)	1104
PctI	GAATGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	1251
PfeI	GAWTC	3 cut(s)	468, 1022, 1088
PflFI	GACNNNGTC	1 cut(s)	1072
PflMI	CCANNNNNTGG	2 cut(s)	676, 848
PkrI	GCNGC	9 cut(s)	38, 41, 44, 121, 448, 1051, 1054, 1114, 1195
PleI	GAGTC	1 cut(s)	1063
PpsI	GAGTC	1 cut(s)	1063
PshAI	GACNNNNGTC	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	921
Psp1406I	AACGTT	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	3 cut(s)	411, 840, 1311
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	1072
PvuII	CAGCTG	2 cut(s)	39, 1085
RsaI	GTAC	2 cut(s)	567, 616
RsaNI	GTAC	2 cut(s)	566, 615
SaqAI	TTAA	3 cut(s)	764, 822, 1414
SatI	GCNGC	9 cut(s)	37, 40, 43, 120, 447, 1050, 1053, 1113, 1194
Sau3AI	GATC	4 cut(s)	95, 151, 664, 1351
SchI	GAGTC	1 cut(s)	1063
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	3 cut(s)	358, 414, 969
SexAI	ACCWGGT	1 cut(s)	841
SfaNI	GCATC	4 cut(s)	241, 1153, 1274, 1407
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	979
SmlI	CTYRAG	2 cut(s)	1058, 1127
SmoI	CTYRAG	2 cut(s)	1058, 1127
SphI	GCATGC	1 cut(s)	1104
Sse9I	AATT	8 cut(s)	673, 924, 975, 987, 1043, 1298, 1347, 1357
SspI	AATATT	2 cut(s)	700, 1012
SspMI	CTAG	5 cut(s)	311, 347, 359, 569, 1262
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	3 cut(s)	310, 816, 872
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	200, 344
TaqI	TCGA	2 cut(s)	223, 979
TaqII	GACCGA	2 cut(s)	47, 1062
TasI	AATT	8 cut(s)	673, 924, 975, 987, 1043, 1298, 1347, 1357
TatI	WGTACW	1 cut(s)	614
TauI	GCSGC	2 cut(s)	45, 122
TfiI	GAWTC	3 cut(s)	468, 1022, 1088
Tru1I	TTAA	3 cut(s)	764, 822, 1414
Tru9I	TTAA	3 cut(s)	764, 822, 1414
TscAI	CASTG	3 cut(s)	525, 958, 1024
TseFI	GTSAC	4 cut(s)	245, 454, 1137, 1203
TseI	GCWGC	7 cut(s)	36, 39, 446, 1049, 1052, 1112, 1193
Tsp45I	GTSAC	4 cut(s)	245, 454, 1137, 1203
TspDTI	ATGAA	4 cut(s)	362, 451, 628, 783
TspGWI	ACGGA	2 cut(s)	41, 1258
TspRI	CASTG	3 cut(s)	525, 958, 1024
Tth111I	GACNNNGTC	1 cut(s)	1072
Van91I	CCANNNNNTGG	2 cut(s)	676, 848
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	2 cut(s)	975, 987
XceI	RCATGY	1 cut(s)	1104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XmaJI	CCTAGG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	1251
XspI	CTAG	5 cut(s)	311, 347, 359, 569, 1262
Zsp2I	ATGCAT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.