Rh5DG339200

aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
45882316 .. 45886303
3988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG339200.1

Sequence Viewer

Length: 1332 bp
ATGGCATCTTCAAATAATGACCATGATCAGGTTAAAGGAGCGGGACTCTTCCAGAGGTTAAGGGGAAAGATAGTTAAGTTTGGCTTGATGTTAAAAAAACTAGGGCAAGATGATCCAAGAAGAATTGTTCATTCTCTTAAAGTGGCACTTGCTCTTACATTGATCTCCATGTTATTCTACTTTGAACCACTCTATGACGGTTTTGGTATAGCTGCTATGTGGGCTATTCTGACTGTTGTGGTCGTTTTTGAATTTACTGTTGGAGCGACGATAGGACGAGGTTTGAATAGAATAATGTCAACTGTAGTAGCTGCTGCTCTTGGCATTGGAGCTCATCGATTAGCAACTCTTTCGGGCAATCAAGGAGAGCCAATACTTATTGGTCTCTTTGTCTTCGTAGAAGCTGGAATAGTGACATTCTTCAGATTTATTCCCCAAATGAAGGCAAGATACGATTATGGGCTGCTGATATTCAACTTGACATTCTGCCTAATATCGGTGTCTGGCTATCGCGACGAGGAGGTTATACGATTAGGATTCGAGAGGGTATCTACCATCATCATTGGAAGTTGTACTGCAGTTACTGTTTGTGTTTTCATTCGTCCAGTATGGATTGGGGCGGAACTTCACAATCAGATTGCTACCAACATGGAAAAGCTTGCCAATTTCTTAGAAGAATTTGGAGATGAATACTTTACAGTATCTGAGAATGGCCAGATCAGAGGCAAGTCATCCTCTCTTCAAGGATATAAAAGTGTTCTAGCTTCAAAAGGCAGTGAAGACACCATGGCTAATTTGGCAAGATGGGAACCGGGCCATGGAAGGTTCAAGTTTCATCATCCATGGAAACAATACTTGAAAGTTGGAACCCTAACTCGCCAATGTGCGTTCAAAATTGAAGCTCTCAACAACTACCTTACCTCTGAAACCCAAACACCTCAGGAAGTTAAAAGCATAATACAAGGGCCAAGCGTGGTTATAAGCTCAGAGTGTGGGAAAGCATTGAAGCAGTTAGCAACCTCAATGAGGAAAATGACCAAATCATCCTCAAACGATCCTCACATTGCAAATTCAAAAGATGCCGCTGAAGAACTCAAAGCTGTTATAAGATCAAGCTTGTGTAAACTGCCAGCTGCTGATTCCCTGCATATAATACAAGAAGGTGCAGTGGCTTCACTACTCTTTGAAATTATCAGATGTACAGAGAAAATTGCAGACGCTGTACATAAACTAGCATCCCAAGCACATTTTAACGATGTAAAGCCGACAGTGACACCGAACCAGGAAAACTCCGTGAATGATGGGCCACACCATGTTATTGCGATTGAGTGA

Protein Analysis

443

Amino Acids

48.75

Weight (kDa)

8.7

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 33 - 372 1.3e-138 Aluminium activated malate transporter
FUSC_2 PF13515 72 - 195 7e-08 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis pycom03g10930 pycom11g14730
rosa_chinensis RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 980, 1106
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 513
AciI CCGC 3 cut(s) 41, 620, 1083
AclWI GGATC 2 cut(s) 107, 1049
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 3 cut(s) 251, 677, 1069
AcuI CTGAAG 2 cut(s) 406, 1107
AfaI GTAC 3 cut(s) 574, 1201, 1224
AfiI CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
AjnI CCWGG 1 cut(s) 1281
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 107, 1049
AlwNI CAGNNNCTG 4 cut(s) 584, 704, 1136, 1220
AoxI GGCC 4 cut(s) 712, 814, 965, 1304
ApeKI GCWGC 5 cut(s) 212, 311, 314, 463, 1133
ApoI RAATTY 3 cut(s) 251, 677, 1069
AspS9I GGNCC 3 cut(s) 814, 965, 1304
AsuC2I CCSGG 1 cut(s) 813
AxyI CCTNAGG 1 cut(s) 939
BalI TGGCCA 1 cut(s) 714
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BbsI GAAGAC 2 cut(s) 385, 786
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 5 cut(s) 199, 298, 301, 450, 1120
BccI CCATC 3 cut(s) 563, 798, 1295
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 1 cut(s) 1283
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 3 cut(s) 101, 761, 1232
BfmI CTRYAG 2 cut(s) 303, 576
BisI GCNGC 6 cut(s) 213, 312, 315, 464, 1083, 1134
BlsI GCNGC 6 cut(s) 214, 313, 316, 465, 1084, 1135
Bme1390I CCNGG 2 cut(s) 813, 1283
BmgT120I GGNCC 3 cut(s) 814, 965, 1304
BmiI GGNNCC 2 cut(s) 810, 868
BmrFI CCNGG 2 cut(s) 813, 1283
BmsI GCATC 3 cut(s) 14, 1069, 1244
BpiI GAAGAC 2 cut(s) 385, 786
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpuMI CCSGG 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 786, 817, 842
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
Bse1I ACTGG 1 cut(s) 605
Bse21I CCTNAGG 1 cut(s) 939
Bse3DI GCAATG 1 cut(s) 1062
BseBI CCWGG 1 cut(s) 1283
BseCI ATCGAT 1 cut(s) 337
BseDI CCNNGG 3 cut(s) 786, 817, 842
BseGI GGATG 4 cut(s) 731, 838, 1043, 1235
BseLI CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
BseMI GCAATG 1 cut(s) 1062
BseMII CTCAG 3 cut(s) 696, 953, 999
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 5 cut(s) 199, 298, 301, 450, 1120
BsgI GTGCAG 1 cut(s) 1185
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 4 cut(s) 714, 816, 967, 1306
BshVI ATCGAT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 4 cut(s) 714, 816, 967, 1306
Bso31I GGTCTC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 2 cut(s) 1199, 1222
Bsp143I GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
Bsp19I CCATGG 3 cut(s) 786, 817, 842
Bsp68I TCGCGA 1 cut(s) 513
BspACI CCGC 3 cut(s) 41, 620, 1083
BspANI GGCC 4 cut(s) 714, 816, 967, 1306
BspCNI CTCAG 3 cut(s) 697, 952, 998
BspDI ATCGAT 1 cut(s) 337
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 810, 868
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 2 cut(s) 107, 1049
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 1062
BsrGI TGTACA 2 cut(s) 1199, 1222
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 786, 817, 842
BssMI GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
BssT1I CCWWGG 3 cut(s) 786, 817, 842
Bst2UI CCWGG 1 cut(s) 1283
Bst4CI ACNGT 7 cut(s) 200, 235, 259, 304, 586, 700, 1270
Bst6I CTCTTC 2 cut(s) 53, 744
BstAUI TGTACA 2 cut(s) 1199, 1222
BstC8I GCNNGC 2 cut(s) 660, 1131
BstDEI CTNAG 4 cut(s) 670, 705, 939, 985
BstDSI CCRYGG 3 cut(s) 786, 817, 842
BstENI CCTNNNNNAGG 1 cut(s) 1024
BstF5I GGATG 4 cut(s) 731, 838, 1043, 1235
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 6 cut(s) 28, 115, 165, 720, 1057, 1112
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
BstMWI GCNNNNNNNGC 3 cut(s) 221, 797, 1241
BstNI CCWGG 1 cut(s) 1283
BstSCI CCNGG 2 cut(s) 811, 1281
BstSFI CTRYAG 2 cut(s) 303, 576
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 5 cut(s) 199, 298, 301, 450, 1120
BstV2I GAAGAC 2 cut(s) 385, 786
Bsu15I ATCGAT 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 939
BsuRI GGCC 4 cut(s) 714, 816, 967, 1306
BsuTUI ATCGAT 1 cut(s) 337
BtgI CCRYGG 3 cut(s) 786, 817, 842
BtsCI GGATG 4 cut(s) 731, 838, 1043, 1235
BtsI GCAGTG 2 cut(s) 781, 1173
BtsIMutI CAGTG 3 cut(s) 781, 1173, 1275
BtuMI TCGCGA 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 660, 1131
CaiI CAGNNNCTG 4 cut(s) 584, 704, 1136, 1220
Cfr13I GGNCC 3 cut(s) 814, 965, 1304
ClaI ATCGAT 1 cut(s) 337
CseI GACGC 1 cut(s) 1226
Csp6I GTAC 3 cut(s) 573, 1200, 1223
CviAII CATG 7 cut(s) 23, 169, 649, 787, 818, 843, 1313
CviQI GTAC 3 cut(s) 573, 1200, 1223
DdeI CTNAG 4 cut(s) 670, 705, 939, 985
DpnI GATC 6 cut(s) 27, 114, 164, 719, 1056, 1111
DpnII GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 2 cut(s) 53, 744
EarI CTCTTC 2 cut(s) 53, 744
EciI GGCGGA 1 cut(s) 635
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 786, 817, 842
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 406, 1107
Eco81I CCTNAGG 1 cut(s) 939
EcoICRI GAGCTC 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 1024
EcoRII CCWGG 1 cut(s) 1281
EcoT14I CCWWGG 3 cut(s) 786, 817, 842
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 3 cut(s) 786, 817, 842
FaeI CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1316
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 132, 164
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 22, 168, 648, 786, 817, 842, 1312
FauI CCCGC 1 cut(s) 34
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 6 cut(s) 213, 312, 315, 464, 1083, 1134
FokI GGATG 4 cut(s) 718, 825, 1030, 1222
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 6 cut(s) 213, 312, 315, 464, 1083, 1134
FspBI CTAG 3 cut(s) 101, 761, 1232
GluI GCNGC 6 cut(s) 213, 312, 315, 464, 1083, 1134
HaeIII GGCC 4 cut(s) 714, 816, 967, 1306
HapII CCGG 1 cut(s) 812
HgaI GACGC 1 cut(s) 1226
Hin1II CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1316
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 2 cut(s) 656, 1114
HinfI GANTC 3 cut(s) 45, 537, 1139
HpaII CCGG 1 cut(s) 812
Hpy166II GTNNAC 2 cut(s) 300, 1124
Hpy188I TCNGA 8 cut(s) 231, 425, 636, 706, 722, 925, 988, 1196
Hpy188III TCNNGA 4 cut(s) 52, 512, 541, 941
Hpy8I GTNNAC 2 cut(s) 300, 1124
Hpy99I CGWCG 2 cut(s) 271, 518
HpyAV CCTTC 3 cut(s) 436, 816, 1154
HpyCH4III ACNGT 7 cut(s) 200, 235, 259, 304, 586, 700, 1270
HpyCH4V TGCA 5 cut(s) 578, 1067, 1147, 1166, 1214
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 797, 1241
HpyF3I CTNAG 4 cut(s) 670, 705, 939, 985
Hsp92II CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1316
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
LmnI GCTCC 3 cut(s) 38, 263, 329
Lsp1109I GCAGC 5 cut(s) 199, 298, 301, 450, 1120
LweI GCATC 3 cut(s) 14, 1069, 1244
MaeI CTAG 3 cut(s) 101, 761, 1232
MaeIII GTNAC 3 cut(s) 412, 580, 1270
MalI GATC 6 cut(s) 27, 114, 164, 719, 1056, 1111
MbiI CCGCTC 1 cut(s) 41
MboI GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
MboII GAAGA 8 cut(s) 40, 132, 385, 412, 686, 731, 791, 1100
MhlI GDGCHC 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 9 cut(s) 123, 251, 664, 677, 793, 894, 1069, 1188, 1209
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 2 cut(s) 241, 844
Mox20I TGGCCA 1 cut(s) 714
MscI TGGCCA 1 cut(s) 714
MseI TTAA 7 cut(s) 33, 59, 75, 92, 138, 948, 1251
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 1085, 1133
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 2 cut(s) 813, 1283
MvaI CCWGG 1 cut(s) 1283
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 3 cut(s) 221, 797, 1241
NciI CCSGG 1 cut(s) 813
NcoI CCATGG 3 cut(s) 786, 817, 842
NdeII GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
NlaIII CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1316
NlaIV GGNNCC 2 cut(s) 810, 868
NmuCI GTSAC 2 cut(s) 412, 1270
NruI TCGCGA 1 cut(s) 513
PfeI GAWTC 2 cut(s) 537, 1139
PkrI GCNGC 6 cut(s) 214, 313, 316, 465, 1084, 1135
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PsiI TTATAA 2 cut(s) 980, 1106
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 1281
PspGI CCWGG 1 cut(s) 1281
PspN4I GGNNCC 2 cut(s) 810, 868
PspPI GGNCC 3 cut(s) 814, 965, 1304
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 4 cut(s) 584, 704, 1136, 1220
PvuII CAGCTG 1 cut(s) 1133
RruI TCGCGA 1 cut(s) 513
RsaI GTAC 3 cut(s) 574, 1201, 1224
RsaNI GTAC 3 cut(s) 573, 1200, 1223
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 7 cut(s) 33, 59, 75, 92, 138, 948, 1251
SatI GCNGC 6 cut(s) 213, 312, 315, 464, 1083, 1134
Sau3AI GATC 6 cut(s) 25, 112, 162, 717, 1054, 1109
Sau96I GGNCC 3 cut(s) 814, 965, 1304
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 813, 1283
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 3 cut(s) 14, 1069, 1244
SfcI CTRYAG 2 cut(s) 303, 576
Sse9I AATT 9 cut(s) 123, 251, 664, 677, 793, 894, 1069, 1188, 1209
SsiI CCGC 3 cut(s) 41, 620, 1083
SspMI CTAG 3 cut(s) 101, 761, 1232
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 811, 1281
StyI CCWWGG 3 cut(s) 786, 817, 842
TaaI ACNGT 7 cut(s) 200, 235, 259, 304, 586, 700, 1270
TaqI TCGA 2 cut(s) 337, 540
TasI AATT 9 cut(s) 123, 251, 664, 677, 793, 894, 1069, 1188, 1209
TatI WGTACW 3 cut(s) 572, 1199, 1222
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 2 cut(s) 537, 1139
Tru1I TTAA 7 cut(s) 33, 59, 75, 92, 138, 948, 1251
Tru9I TTAA 7 cut(s) 33, 59, 75, 92, 138, 948, 1251
TscAI CASTG 3 cut(s) 781, 1173, 1275
TseFI GTSAC 2 cut(s) 412, 1270
TseI GCWGC 5 cut(s) 212, 311, 314, 463, 1133
Tsp45I GTSAC 2 cut(s) 412, 1270
TspDTI ATGAA 5 cut(s) 119, 455, 586, 702, 824
TspGWI ACGGA 1 cut(s) 1282
TspRI CASTG 3 cut(s) 781, 1173, 1275
XagI CCTNNNNNAGG 1 cut(s) 1024
XapI RAATTY 3 cut(s) 251, 677, 1069
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XspI CTAG 3 cut(s) 101, 761, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.