RchiOBHm_Chr5g0048441

aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
45340404 .. 45342348
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32621

Sequence Viewer

Length: 1245 bp
ATGTTAAAAAAACTAGGGCAAGATGATCCAAGAAGAATTGTTCATTCTCTTAAAGTGGCACTAGCTCTTACATTGGTCTCCATGTTATTCTACTTTGAACCACTGTATGAAGGTTTAGGTCTTGCTGCTATGTGGGCTATTCTGACTGTTGTGGTCGTTTTTGAATTTTCTGTTGGAGCGACAATAGGACGAGGTTTGAATAGAATGATGTCAACTGTAGTAGCTGCTGCTCTTGGCATTGGAGCTCATCGATTAGCAACTCTGACAGGAAATCAAGGAGAGCCTATACTTATTGCTCTCTTTGTCTTCGTAGAAGCTGGAATAGTGACATTCTTCAGATTCATTCCCCAAATGAAGACAAGATACGATTATGGGCTGCTGATATTCAACGTGACGTTCTGCCTAGTATCGGTGTCTGGATATCGCGACAAAGTGGTCATACAAATGGGATTCGAAAGGGTATGTACCATCACCATTGGAGGCTGTATCGCTGTTGCTGTTTGTGTTTTCATTCGTCCAGTATGGATAGGGGTGGAGCTTCACAATCGGATTTCTACCAACATGGAAAAGCTGGCCAATTTCTTAGAAGAATTTGGAGATGAATACTTTAAAGTATCTGAAAATGAGCAGACCAGAGAGAAGTCATCGTTTATTGAGGGATATAAAAGTGTTCTAACTTCAAAAGGCAGTGAAAACACTATGGCTAATTTGGCAAGATGGGAACCGGGCCATGGGAATTTCAGATTTCGTCATCCATGGGAACAATACTTGAAAGTTGGAACCCTTCCTCGCCAATGTGCGTTCAAAATTGAAGCTCTCAACAACTACCTTACCTCTGAAACCCAAACACCTCAGGAAGTTAAAAGCATAATACAGGGGCCAAGCGTGGTTATAAGCTCGGAGTGTGGGAAAGCGTTGAAGGAGTTAGCAACCTCAGTAAAGAAAATGACCAAATCATCCTCAAATGAGCCTCATATTGCAAAGTCGAAAGATGCTGCTGAGGAACTCAAAGCTGTTATAAGATCAAGCTTGTGTAAACACCCAGCTGATTCTCTACATATAATACAAGAAGGTGCAGTGGCTTCCCTACTCCTTGAAATTATCACATGTATAGAGAAAATTGCCGACGCTGCTCATAAACTAGCATCCCAAGCACATTTTAAGGATGTAAAGCCTACAGTGAAACCGGACCAGGAAAACTCCGTGAATGATGGGCCACACCATGTTATTACAATTGAGGGATAA

Protein Analysis

414

Amino Acids

45.76

Weight (kDa)

8.04

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 4 - 342 1.5e-136 Aluminium activated malate transporter
FUSC_2 PF13515 43 - 167 1.4e-08 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis pycom03g10930 pycom11g14730
rosa_chinensis RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 893, 1019
AasI GACNNNNNNGTC 1 cut(s) 434
AccII CGCG 1 cut(s) 426
AclWI GGATC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 3 cut(s) 164, 590, 736
AcuI CTGAAG 1 cut(s) 319
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 2 cut(s) 409, 731
AflIII ACRYGT 1 cut(s) 1106
AjnI CCWGG 1 cut(s) 1191
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 20
AoxI GGCC 4 cut(s) 573, 727, 878, 1214
ApeKI GCWGC 6 cut(s) 125, 224, 227, 376, 995, 1130
ApoI RAATTY 3 cut(s) 164, 590, 736
AspS9I GGNCC 4 cut(s) 727, 878, 1189, 1214
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 1 cut(s) 463
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 1 cut(s) 1189
AxyI CCTNAGG 1 cut(s) 852
BalI TGGCCA 1 cut(s) 575
BanII GRGCYC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 2 cut(s) 298, 362
Bbv12I GWGCWC 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 999
BbvI GCAGC 6 cut(s) 112, 211, 214, 363, 982, 1117
BccI CCATC 3 cut(s) 476, 711, 1205
BciT130I CCWGG 1 cut(s) 1193
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 4 cut(s) 14, 62, 404, 1142
BfmI CTRYAG 2 cut(s) 216, 1176
BisI GCNGC 6 cut(s) 126, 225, 228, 377, 996, 1131
BlsI GCNGC 6 cut(s) 127, 226, 229, 378, 997, 1132
Bme1390I CCNGG 2 cut(s) 726, 1193
Bme18I GGWCC 1 cut(s) 1189
BmgT120I GGNCC 4 cut(s) 727, 878, 1189, 1214
BmiI GGNNCC 3 cut(s) 723, 781, 879
BmrFI CCNGG 2 cut(s) 726, 1193
BmsI GCATC 2 cut(s) 982, 1154
BpiI GAAGAC 2 cut(s) 298, 362
Bpu10I CCTNAGC 1 cut(s) 999
Bpu14I TTCGAA 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 726
Bsa29I ATCGAT 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 730, 755
BsaWI WCCGGW 1 cut(s) 1186
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 731
Bse1I ACTGG 1 cut(s) 518
Bse21I CCTNAGG 1 cut(s) 852
BseBI CCWGG 1 cut(s) 1193
BseCI ATCGAT 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 730, 755
BseGI GGATG 4 cut(s) 751, 956, 1145, 1171
BseLI CCNNNNNNNGG 2 cut(s) 409, 731
BseMII CTCAG 3 cut(s) 866, 948, 990
BseNI ACTGG 1 cut(s) 518
BseXI GCAGC 6 cut(s) 112, 211, 214, 363, 982, 1117
BseYI CCCAGC 1 cut(s) 1042
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 4 cut(s) 575, 729, 880, 1216
BshVI ATCGAT 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 2 cut(s) 725, 1187
BslI CCNNNNNNNGG 2 cut(s) 409, 731
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 4 cut(s) 575, 729, 880, 1216
Bso31I GGTCTC 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 25, 1022
Bsp19I CCATGG 2 cut(s) 730, 755
Bsp68I TCGCGA 1 cut(s) 426
BspANI GGCC 4 cut(s) 575, 729, 880, 1216
BspCNI CTCAG 3 cut(s) 865, 947, 991
BspDI ATCGAT 1 cut(s) 250
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 723, 781, 879
BspPI GGATC 1 cut(s) 20
BspT104I TTCGAA 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 730, 755
BssMI GATC 2 cut(s) 25, 1022
BssT1I CCWWGG 2 cut(s) 730, 755
Bst2UI CCWGG 1 cut(s) 1193
Bst4CI ACNGT 4 cut(s) 105, 148, 217, 1180
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 4 cut(s) 583, 852, 934, 999
BstDSI CCRYGG 2 cut(s) 730, 755
BstF5I GGATG 4 cut(s) 751, 956, 1145, 1171
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 2 cut(s) 28, 1025
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 25, 1022
BstMWI GCNNNNNNNGC 4 cut(s) 134, 710, 1130, 1151
BstNI CCWGG 1 cut(s) 1193
BstNSI RCATGY 1 cut(s) 1110
BstSCI CCNGG 2 cut(s) 724, 1191
BstSFI CTRYAG 2 cut(s) 216, 1176
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 6 cut(s) 112, 211, 214, 363, 982, 1117
BstV2I GAAGAC 2 cut(s) 298, 362
Bsu15I ATCGAT 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 852
BsuRI GGCC 4 cut(s) 575, 729, 880, 1216
BsuTUI ATCGAT 1 cut(s) 250
BtgI CCRYGG 2 cut(s) 730, 755
BtsCI GGATG 4 cut(s) 751, 956, 1145, 1171
BtsI GCAGTG 2 cut(s) 694, 1083
BtsIMutI CAGTG 4 cut(s) 101, 694, 1083, 1185
BtuMI TCGCGA 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 573
Cfr13I GGNCC 4 cut(s) 727, 878, 1189, 1214
ClaI ATCGAT 1 cut(s) 250
CseI GACGC 1 cut(s) 1136
Csp6I GTAC 1 cut(s) 465
CviAII CATG 6 cut(s) 82, 562, 731, 756, 1107, 1223
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 4 cut(s) 583, 852, 934, 999
DpnI GATC 2 cut(s) 27, 1024
DpnII GATC 2 cut(s) 25, 1022
DraI TTTAAA 1 cut(s) 610
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 573
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 730, 755
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 82
Eco32I GATATC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 1189
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 1191
EcoRV GATATC 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 730, 755
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 730, 755
FaeI CATG 6 cut(s) 85, 565, 734, 759, 1110, 1226
FatI CATG 6 cut(s) 81, 561, 730, 755, 1106, 1222
Fnu4HI GCNGC 6 cut(s) 126, 225, 228, 377, 996, 1131
FokI GGATG 4 cut(s) 738, 943, 1132, 1178
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 6 cut(s) 126, 225, 228, 377, 996, 1131
FspBI CTAG 4 cut(s) 14, 62, 404, 1142
GluI GCNGC 6 cut(s) 126, 225, 228, 377, 996, 1131
GsaI CCCAGC 1 cut(s) 1046
HaeIII GGCC 4 cut(s) 575, 729, 880, 1216
HapII CCGG 2 cut(s) 725, 1187
HgaI GACGC 1 cut(s) 1136
Hin1II CATG 6 cut(s) 85, 565, 734, 759, 1110, 1226
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 1027
HinfI GANTC 3 cut(s) 339, 450, 1049
HpaII CCGG 2 cut(s) 725, 1187
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 2 cut(s) 213, 1037
Hpy188I TCNGA 8 cut(s) 144, 264, 338, 549, 619, 743, 838, 901
Hpy188III TCNNGA 3 cut(s) 417, 425, 854
Hpy8I GTNNAC 2 cut(s) 213, 1037
Hpy99I CGWCG 1 cut(s) 1130
HpyAV CCTTC 4 cut(s) 104, 794, 913, 1064
HpyCH4III ACNGT 4 cut(s) 105, 148, 217, 1180
HpyCH4IV ACGT 2 cut(s) 390, 395
HpyCH4V TGCA 2 cut(s) 980, 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 710, 1130, 1151
HpyF3I CTNAG 4 cut(s) 583, 852, 934, 999
HpySE526I ACGT 2 cut(s) 390, 395
Hsp92II CATG 6 cut(s) 85, 565, 734, 759, 1110, 1226
Kzo9I GATC 2 cut(s) 25, 1022
LmnI GCTCC 3 cut(s) 176, 242, 535
Lsp1109I GCAGC 6 cut(s) 112, 211, 214, 363, 982, 1117
LweI GCATC 2 cut(s) 982, 1154
MaeI CTAG 4 cut(s) 14, 62, 404, 1142
MaeII ACGT 2 cut(s) 390, 395
MaeIII GTNAC 2 cut(s) 325, 391
MalI GATC 2 cut(s) 27, 1024
MboI GATC 2 cut(s) 25, 1022
MboII GAAGA 5 cut(s) 45, 298, 325, 367, 599
MfeI CAATTG 1 cut(s) 1233
MhlI GDGCHC 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 575
MluNI TGGCCA 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 154, 757
Mox20I TGGCCA 1 cut(s) 575
MscI TGGCCA 1 cut(s) 575
MseI TTAA 5 cut(s) 5, 51, 609, 861, 1161
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 2 cut(s) 725, 1187
MspR9I CCNGG 2 cut(s) 726, 1193
MunI CAATTG 1 cut(s) 1233
MvaI CCWGG 1 cut(s) 1193
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 4 cut(s) 134, 710, 1130, 1151
NciI CCSGG 1 cut(s) 726
NcoI CCATGG 2 cut(s) 730, 755
NdeII GATC 2 cut(s) 25, 1022
NlaIII CATG 6 cut(s) 85, 565, 734, 759, 1110, 1226
NlaIV GGNNCC 3 cut(s) 723, 781, 879
NmuCI GTSAC 2 cut(s) 325, 391
NruI TCGCGA 1 cut(s) 426
NspI RCATGY 1 cut(s) 1110
NspV TTCGAA 1 cut(s) 453
PciI ACATGT 1 cut(s) 1106
PfeI GAWTC 3 cut(s) 339, 450, 1049
PkrI GCNGC 6 cut(s) 127, 226, 229, 378, 997, 1132
PscI ACATGT 1 cut(s) 1106
PsiI TTATAA 2 cut(s) 893, 1019
Psp124BI GAGCTC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 1191
PspFI CCCAGC 1 cut(s) 1042
PspGI CCWGG 1 cut(s) 1191
PspN4I GGNNCC 3 cut(s) 723, 781, 879
PspPI GGNCC 4 cut(s) 727, 878, 1189, 1214
PvuII CAGCTG 1 cut(s) 1046
RruI TCGCGA 1 cut(s) 426
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 1 cut(s) 443
SacI GAGCTC 1 cut(s) 247
SaqAI TTAA 5 cut(s) 5, 51, 609, 861, 1161
SatI GCNGC 6 cut(s) 126, 225, 228, 377, 996, 1131
Sau3AI GATC 2 cut(s) 25, 1022
Sau96I GGNCC 4 cut(s) 727, 878, 1189, 1214
ScrFI CCNGG 2 cut(s) 726, 1193
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 2 cut(s) 982, 1154
SfcI CTRYAG 2 cut(s) 216, 1176
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 1 cut(s) 1189
SmiMI CAYNNNNRTG 1 cut(s) 443
SspMI CTAG 4 cut(s) 14, 62, 404, 1142
SstI GAGCTC 1 cut(s) 247
StyD4I CCNGG 2 cut(s) 724, 1191
StyI CCWWGG 2 cut(s) 730, 755
TaaI ACNGT 4 cut(s) 105, 148, 217, 1180
TaiI ACGT 2 cut(s) 393, 398
TaqI TCGA 3 cut(s) 250, 453, 986
TfiI GAWTC 3 cut(s) 339, 450, 1049
Tru1I TTAA 5 cut(s) 5, 51, 609, 861, 1161
Tru9I TTAA 5 cut(s) 5, 51, 609, 861, 1161
TscAI CASTG 4 cut(s) 108, 694, 1083, 1185
TseFI GTSAC 2 cut(s) 325, 391
TseI GCWGC 6 cut(s) 125, 224, 227, 376, 995, 1130
Tsp45I GTSAC 2 cut(s) 325, 391
TspDTI ATGAA 6 cut(s) 32, 123, 331, 368, 499, 615
TspGWI ACGGA 1 cut(s) 1192
TspRI CASTG 4 cut(s) 108, 694, 1083, 1185
VpaK11BI GGWCC 1 cut(s) 1189
XapI RAATTY 3 cut(s) 164, 590, 736
XceI RCATGY 1 cut(s) 1110
XspI CTAG 4 cut(s) 14, 62, 404, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.