Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Reverse (-)

45659232 .. 45677942

Gene Structure 18711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG338900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGAACAGCAGCTGCGGCGGAGGGCCTTTCGGTCGAGTGGTGCGGTGTCTGAAGGCGGTGCCGGAGAGGTCATGGGGTGAGGTGCTGGAGGCGGCGAGCGAAGCGAAGAAGCTCGGGGAGGATGATCCCAGAAGGATTGTGCATTCGTTCAAAGTAGGGTTGGCTCTGACGTTGGTGTCTCTTTTTTATTACTGTCGACCGCTTTATGATGGCTTCGGTGTCGATGCAATGTGGGCTGTCTTGACCGTGATCGTTGTCTTTGAGTTCTCAGTCGGAGCAACCCTAGGGAAGGGTATAAATATGATGTTGGCAACGTTACTAGCTGTTGCTCTAGCTGTTGGAGTTCATCACATATCAACTCTTTGGGGAGGAGAAGTCGGGGAACCCATATTGATTGCATTTTTCGTCTTTGTTGTAGCTGCAAGTGTGACCTTCATGAGATTCTTCCCCGCATTGAAGGCAAGGTATGACTACGGGATGTTGATATTCATACTGACCTTCTGCTTGGTTTCGGTATCTGGCTACCGCGAAACTCAGGTACTAGACATGGCACACAAGAGGCTATCAACGATTGCGATAGGAAGCTGTACTCCTATTATGGTTTGTATTTGCATTTGCCCCGTGTGGATTGGAGTTGATCTCCACAATTTGGTTGCTGGTAACATGGAAAAGCTTGGGGATTTTATGGAAGGATTTGGATTTGAATACTTTGACATAAAAGAGAATGGGTTGTCATTAAGTGATAATCAATATTTTCTTCAGCAATATAAAAGTGTTCTTTCATCAAAAAGCCTTGAAGAAACCATGGCTAACTTGGCAAGATGGGAACCAGGTCATGGCGGGTTCAAGTTCGGCCACCCATGGCAGAAGTATTTGAATGTTGGAAGCCAAACTCGGCAATGTGCTTATAAAATTGAAGCTCTTAACACTTACCTGAACACTGATATCCAATTCAAGGGGGATTCCAAAAATCACACTGTTCCCTTTGCTGATGTTATGAACTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

337

Amino Acids

37.33

Weight (kDa)

6.25

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	38 - 326	2.8e-123	Aluminium activated malate transporter
FUSC_2	PF13515	76 - 198	6.7e-08	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AasI	GACNNNNNNGTC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	61
AccB7I	CCANNNNNTGG	2 cut(s)	652, 839
AccI	GTMKAC	1 cut(s)	199
AccII	CGCG	1 cut(s)	531
AciI	CCGC	9 cut(s)	18, 21, 46, 59, 95, 203, 453, 529, 843
AclI	AACGTT	1 cut(s)	317
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	856
AcuI	CTGAAG	2 cut(s)	74, 746
AfaI	GTAC	2 cut(s)	543, 592
AfiI	CCNNNNNNNGG	4 cut(s)	292, 652, 839, 958
AgsI	TTSAA	8 cut(s)	154, 460, 707, 800, 850, 880, 920, 958
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	8 cut(s)	15, 115, 326, 338, 422, 588, 676, 923
AluI	AGCT	8 cut(s)	15, 115, 326, 338, 422, 588, 676, 923
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	26, 856
ApeKI	GCWGC	3 cut(s)	12, 15, 422
AspA2I	CCTAGG	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	116
AvrII	CCTAGG	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	2, 24, 409
BccI	CCATC	2 cut(s)	206, 819
BciT130I	CCWGG	1 cut(s)	834
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	4 cut(s)	287, 323, 335, 545
BisI	GCNGC	5 cut(s)	13, 16, 19, 96, 423
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	5 cut(s)	14, 17, 20, 97, 424
Bme1390I	CCNGG	1 cut(s)	834
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	63, 387, 831
BmrFI	CCNGG	1 cut(s)	834
BmsI	GCATC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	627, 659
BpmI	CTGGAG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	286, 807, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 652, 839, 958
Bse3DI	GCAATG	2 cut(s)	237, 908
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	3 cut(s)	286, 807, 863
BseGI	GGATG	2 cut(s)	130, 486
BseLI	CCNNNNNNNGG	4 cut(s)	292, 652, 839, 958
BseMI	GCAATG	2 cut(s)	237, 908
BseMII	CTCAG	2 cut(s)	285, 551
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	2, 24, 409
Bsh1236I	CGCG	1 cut(s)	531
Bsh1285I	CGRYCG	2 cut(s)	37, 203
BshFI	GGCC	2 cut(s)	28, 858
BshNI	GGYRCC	1 cut(s)	61
BsiEI	CGRYCG	2 cut(s)	37, 203
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	292, 652, 839, 958
BsmAI	GTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	28, 858
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	127, 252, 640
Bsp19I	CCATGG	2 cut(s)	807, 863
BspACI	CCGC	9 cut(s)	18, 21, 46, 59, 95, 203, 453, 529, 843
BspANI	GGCC	2 cut(s)	28, 858
BspCNI	CTCAG	2 cut(s)	284, 550
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	3 cut(s)	63, 387, 831
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	237, 908
BssECI	CCNNGG	3 cut(s)	286, 807, 863
BssMI	GATC	3 cut(s)	127, 252, 640
BssT1I	CCWWGG	3 cut(s)	286, 807, 863
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	3 cut(s)	197, 250, 982
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	271, 537
BstDSI	CCRYGG	2 cut(s)	807, 863
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	130, 486
BstFNI	CGCG	1 cut(s)	531
BstKTI	GATC	3 cut(s)	130, 255, 643
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	127, 252, 640
BstMCI	CGRYCG	2 cut(s)	37, 203
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 104, 236, 461, 818
BstNI	CCWGG	1 cut(s)	834
BstSCI	CCNGG	1 cut(s)	832
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	2, 24, 409
BsuRI	GGCC	2 cut(s)	28, 858
BtgI	CCRYGG	2 cut(s)	807, 863
BtsCI	GGATG	2 cut(s)	130, 486
BtsIMutI	CAGTG	2 cut(s)	942, 978
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	15
CciI	TCATGA	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	832
Csp6I	GTAC	2 cut(s)	542, 591
CviAII	CATG	8 cut(s)	75, 439, 550, 667, 808, 839, 864, 1011
CviQI	GTAC	2 cut(s)	542, 591
DdeI	CTNAG	2 cut(s)	271, 537
DpnI	GATC	3 cut(s)	129, 254, 642
DpnII	GATC	3 cut(s)	127, 252, 640
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	856
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	3 cut(s)	286, 807, 863
Eco32I	GATATC	1 cut(s)	949
Eco57I	CTGAAG	2 cut(s)	74, 746
Eco88I	CYCGRG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	832
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	3 cut(s)	286, 807, 863
ErhI	CCWWGG	3 cut(s)	286, 807, 863
FaeI	CATG	8 cut(s)	78, 442, 553, 670, 811, 842, 867, 1014
FatI	CATG	8 cut(s)	74, 438, 549, 666, 807, 838, 863, 1010
FauI	CCCGC	2 cut(s)	460, 836
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	5 cut(s)	13, 16, 19, 96, 423
FokI	GGATG	2 cut(s)	137, 493
Fsp4HI	GCNGC	5 cut(s)	13, 16, 19, 96, 423
FspBI	CTAG	4 cut(s)	287, 323, 335, 545
GluI	GCNGC	5 cut(s)	13, 16, 19, 96, 423
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	28, 858
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	8 cut(s)	78, 442, 553, 670, 811, 842, 867, 1014
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	2 cut(s)	444, 965
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	54, 171, 278
Hpy188III	TCNNGA	2 cut(s)	244, 439
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	7 cut(s)	49, 129, 286, 445, 454, 511, 686
HpyCH4III	ACNGT	3 cut(s)	197, 250, 982
HpyCH4IV	ACGT	2 cut(s)	173, 317
HpyCH4V	TGCA	5 cut(s)	145, 230, 401, 425, 615
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 104, 236, 461, 818
HpyF3I	CTNAG	2 cut(s)	271, 537
HpySE526I	ACGT	2 cut(s)	173, 317
Hsp92II	CATG	8 cut(s)	78, 442, 553, 670, 811, 842, 867, 1014
Kzo9I	GATC	3 cut(s)	127, 252, 640
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	9 cut(s)	74, 78, 145, 507, 524, 645, 819, 846, 950
Lsp1109I	GCAGC	3 cut(s)	2, 24, 409
LweI	GCATC	1 cut(s)	217
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	4 cut(s)	287, 323, 335, 545
MaeII	ACGT	2 cut(s)	173, 317
MaeIII	GTNAC	3 cut(s)	318, 430, 662
MalI	GATC	3 cut(s)	129, 254, 642
MboI	GATC	3 cut(s)	127, 252, 640
MboII	GAAGA	4 cut(s)	121, 439, 752, 812
MluCI	AATT	3 cut(s)	649, 915, 953
MmeI	TCCRAC	3 cut(s)	256, 322, 865
MnlI	CCTC	7 cut(s)	17, 63, 76, 85, 115, 365, 555
MseI	TTAA	2 cut(s)	740, 927
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	834
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	834
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	5 cut(s)	18, 104, 236, 461, 818
NcoI	CCATGG	2 cut(s)	807, 863
NdeII	GATC	3 cut(s)	127, 252, 640
NlaIII	CATG	8 cut(s)	78, 442, 553, 670, 811, 842, 867, 1014
NlaIV	GGNNCC	3 cut(s)	63, 387, 831
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	438
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	444, 965
PflMI	CCANNNNNTGG	2 cut(s)	652, 839
PkrI	GCNGC	5 cut(s)	14, 17, 20, 97, 424
PsiI	TTATAA	1 cut(s)	912
Psp1406I	AACGTT	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	3 cut(s)	63, 387, 831
PspPI	GGNCC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	15
RsaI	GTAC	2 cut(s)	543, 592
RsaNI	GTAC	2 cut(s)	542, 591
SalI	GTCGAC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	740, 927
SatI	GCNGC	5 cut(s)	13, 16, 19, 96, 423
Sau3AI	GATC	3 cut(s)	127, 252, 640
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	834
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	1 cut(s)	217
Sse9I	AATT	3 cut(s)	649, 915, 953
SsiI	CCGC	9 cut(s)	18, 21, 46, 59, 95, 203, 453, 529, 843
SspI	AATATT	1 cut(s)	755
SspMI	CTAG	4 cut(s)	287, 323, 335, 545
StyD4I	CCNGG	1 cut(s)	832
StyI	CCWWGG	3 cut(s)	286, 807, 863
TaaI	ACNGT	3 cut(s)	197, 250, 982
TaiI	ACGT	2 cut(s)	176, 320
TaqI	TCGA	3 cut(s)	37, 199, 225
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	649, 915, 953
TatI	WGTACW	1 cut(s)	590
TauI	GCSGC	2 cut(s)	21, 98
TfiI	GAWTC	2 cut(s)	444, 965
Tru1I	TTAA	2 cut(s)	740, 927
Tru9I	TTAA	2 cut(s)	740, 927
TscAI	CASTG	2 cut(s)	949, 985
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	12, 15, 422
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	338, 427, 481, 774
TspRI	CASTG	2 cut(s)	949, 985
Van91I	CCANNNNNTGG	2 cut(s)	652, 839
XagI	CCTNNNNNAGG	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmaJI	CCTAGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	4 cut(s)	287, 323, 335, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.