Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002591.1

Orthogroup ID

OG0000374

Physical Location & Seq

Genomic Coordinates Forward (+)

153612 .. 153899

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002591.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggagaacagcagctgcggcggagggcctttcggtcgagtggtgcggtggctgaaggcggtgccagagagatcatggggtaaggtgctggaggcggcgagggaagcgaagaagctcgggaaggatgatcccagaaggattgtgcattcgttcaaagtagggttggctctgacgttggtgtctcttttttattactgtcgaccgctttatgatggcttcggtgtcgatgcaatgtgggctgtcttgaccgtgatcgttgtctttgagttctcagtcggtaagcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

9.51

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08430 AT1G08440 AT2G27240 AT2G27240 AT4G17585
fragaria_vesca	FvH4_3g26440 FvH4_3g26440 FvH4_3g26490 FvH4_3g26520 FvH4_3g26530 FvH4_6g51850 FvH4_6g51860
malus_domestica	MD00G1017600.v1.1 MD00G1049200.v1.1 MD00G1049700.v1.1 MD03G1155200.v1.1 MD03G1155400.v1.1 MD03G1155500.v1.1 MD11G1173000.v1.1
prunus_persica	Prupe.6G144000_v2.0.a1 Prupe.6G144100_v2.0.a1 Prupe.6G144200_v2.0.a1
pyrus_communis	pycom03g10930 pycom11g14730
rosa_chinensis	RchiOBHm_Chr5g0048251 RchiOBHm_Chr5g0048321 RchiOBHm_Chr5g0048411 RchiOBHm_Chr5g0048431 RchiOBHm_Chr5g0048441 RchiOBHm_Chr5g0048461 RchiOBHm_Chr5g0048471 RchiOBHm_Chr5g0048481
rosa_laevigata	RLG00000034506 RLG00000034507 RLG00000034512 RLG00000034514 RLG00000034515 RLG00000034517 RLG00000034519 RLG00000034523 RLG00000034525
rosa_multiflora	Rmu_sc0000398.1_g000002 Rmu_sc0001240.1_g000004 Rmu_sc0001240.1_g000016 Rmu_sc0002563.1_g000001 Rmu_sc0002563.1_g000017 Rmu_sc0002563.1_g000037 Rmu_sc0002563.1_g000048 Rmu_sc0002563.1_g000055 Rmu_sc0002563.1_g000073 Rmu_sc0002591.1_g000001 Rmu_sc0002591.1_g000037 Rmu_sc0002591.1_g000045
rosa_roxburghii	Rroxscaffold_1G00033370 Rroxscaffold_1G00033390 Rroxscaffold_1G00033420 Rroxscaffold_1G00033440 Rroxscaffold_1G00033450 Rroxscaffold_1G00033530 Rroxscaffold_1G00033600
rosa_rugosa	Rorug05G0237500 Rorug05G0237700 Rorug05G0237800 Rorug05G0238000 Rorug05G0238200 Rorug05G0238300
rosa_samantha	Rh5AG316700 Rh5AG316900 Rh5AG317100 Rh5AG317400 Rh5AG317500 Rh5AG317800 Rh5AG318200 Rh5AG318500 Rh5BG327700 Rh5BG327800 Rh5BG327900 Rh5BG328100 Rh5BG328200 Rh5BG328500 Rh5BG328600 Rh5CG353400 Rh5CG353500 Rh5CG353600 Rh5CG353800 Rh5CG354100 Rh5CG354300 Rh5CG354600 Rh5DG338400 Rh5DG338900 Rh5DG339000 Rh5DG339200 Rh5DG339300 Rh5DG339400 Rh5DG339600 Rh5DG339700
rosa_wichuraiana	Rw5G029670 Rw5G029690 Rw5G029700 Rw5G029720 Rw5G029730 Rw5G029750 Rw5G029760 Rw5G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	6 cut(s)	18, 21, 46, 59, 95, 203
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	2 cut(s)	15, 115
AluI	AGCT	2 cut(s)	15, 115
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	12, 15
AspS9I	GGNCC	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	2, 24
BccI	CCATC	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	186
BisI	GCNGC	4 cut(s)	13, 16, 19, 96
BlsI	GCNGC	4 cut(s)	14, 17, 20, 97
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	2, 24
Bsh1285I	CGRYCG	2 cut(s)	37, 203
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	61
BsiEI	CGRYCG	2 cut(s)	37, 203
BsiHKCI	CYCGRG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	71, 127, 252
BspACI	CCGC	6 cut(s)	18, 21, 46, 59, 95, 203
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	237
BssMI	GATC	3 cut(s)	71, 127, 252
Bst4CI	ACNGT	2 cut(s)	197, 250
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	74, 130, 255
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	71, 127, 252
BstMCI	CGRYCG	2 cut(s)	37, 203
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 104, 236
BstV1I	GCAGC	2 cut(s)	2, 24
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	7 cut(s)	15, 28, 52, 115, 167, 216, 239
CviKI_1	RGCY	7 cut(s)	15, 28, 52, 115, 167, 216, 239
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	3 cut(s)	73, 129, 254
DpnII	GATC	3 cut(s)	71, 127, 252
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	26
FaeI	CATG	1 cut(s)	78
FaiI	YATR	2 cut(s)	76, 210
FatI	CATG	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	13, 16, 19, 96
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	4 cut(s)	13, 16, 19, 96
GluI	GCNGC	4 cut(s)	13, 16, 19, 96
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	118, 244
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	49, 115, 129
HpyCH4III	ACNGT	2 cut(s)	197, 250
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	145, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 104, 236
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	71, 127, 252
LpnPI	CCDG	3 cut(s)	74, 78, 145
Lsp1109I	GCAGC	2 cut(s)	2, 24
LweI	GCATC	1 cut(s)	217
MaeII	ACGT	1 cut(s)	173
MalI	GATC	3 cut(s)	73, 129, 254
MboI	GATC	3 cut(s)	71, 127, 252
MboII	GAAGA	1 cut(s)	121
MnlI	CCTC	3 cut(s)	17, 85, 93
MspA1I	CMGCKG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	18, 104, 236
NdeII	GATC	3 cut(s)	71, 127, 252
NlaIII	CATG	1 cut(s)	78
NlaIV	GGNNCC	1 cut(s)	63
PctI	GAATGC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	14, 17, 20, 97
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	198
SatI	GCNGC	4 cut(s)	13, 16, 19, 96
Sau3AI	GATC	3 cut(s)	71, 127, 252
Sau96I	GGNCC	1 cut(s)	26
SetI	ASST	4 cut(s)	17, 87, 117, 176
SfaNI	GCATC	1 cut(s)	217
SsiI	CCGC	6 cut(s)	18, 21, 46, 59, 95, 203
TaaI	ACNGT	2 cut(s)	197, 250
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	37, 199, 225
TaqII	GACCGA	1 cut(s)	23
TauI	GCSGC	2 cut(s)	21, 98
TseI	GCWGC	2 cut(s)	12, 15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.