AT4G21895

DNA binding domain with preference for A/T rich regions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001372
Physical Location & Seq
Reverse (-)
11613225 .. 11615063
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21895.1

Sequence Viewer

Length: 720 bp
ATGAACTCACCTCCTCCTTCTTCTAATGATGGCTTGGCGAAGCGAAAAAGAGGTCGACCGCGCAAAGATGAAAACTCAACTCCAAAACCGGACATGAATTTGGTAGGTAAGGTGGTTACTGGTGTAATCGAAGGATCTTTCGACGCAGGCTATCTCCTTAACGTTAAGGTTAAAGACAGTGACACCCAACTCAGAGGTCTCGTGTTCATACGGGGCAGAGTCACTCCGATCACTCCAGAAAACGACGTGGCTCCTCTTGTTAAAATGTACGGAAGAGAAGATATCAAGAACAACCAAACCGATCATTCTTTCCCTACTGATCAACCAATGCAAGATGCTGCTGTCACTACTACTGACATGGATATTTCTGAATCCTCTCGAGCTTTGGTCGTAGTTCCACAAGCGACCAATGGCCAAGCGAAGGAAGCTACGAAGGATGAAGATGGAGTCATTGAAGGACAAGCTGACACTCGGTTAGTGGAGTTTTTTCCAACTCCAGGCACAATGATGATGACTGCTCAACCAAATCTTGTCTTGGTACCGAAAGAGACAGAACAACAGAAAACAACTGGTGGGAGTCATGGATTCGATCTTATGGAAGAGGAACCAGTTCGTCAAGGAGAGAAGTTGCCAGAGGAGCTATTACATCTAGAGCTTGGAAACAAGACAACATTGAGTGTAGACAACAACATCTCTACAACAGAGGCGCCTGATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

239

Amino Acids

26.1

Weight (kDa)

4.77

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 538
AccB1I GGYRCC 2 cut(s) 538, 706
AccI GTMKAC 2 cut(s) 55, 681
AccII CGCG 1 cut(s) 61
AciI CCGC 1 cut(s) 59
AclI AACGTT 1 cut(s) 162
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 707
AfaI GTAC 2 cut(s) 269, 540
AfiI CCNNNNNNNGG 2 cut(s) 421, 497
AgsI TTSAA 1 cut(s) 455
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 5 cut(s) 383, 428, 464, 640, 655
AluI AGCT 5 cut(s) 383, 428, 464, 640, 655
Alw26I GTCTC 2 cut(s) 203, 542
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 97
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
Asp700I GAANNNNTTC 1 cut(s) 609
Asp718I GGTACC 1 cut(s) 538
AspLEI GCGC 2 cut(s) 63, 709
AvaI CYCGRG 1 cut(s) 378
BalI TGGCCA 1 cut(s) 414
BanI GGYRCC 2 cut(s) 538, 706
BauI CACGAG 1 cut(s) 200
BbvI GCAGC 1 cut(s) 325
BccI CCATC 2 cut(s) 23, 437
BciT130I CCWGG 1 cut(s) 498
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 203, 542
BfaI CTAG 1 cut(s) 650
BfoI RGCGCY 1 cut(s) 710
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 498
BmeT110I CYCGRG 1 cut(s) 378
BmgBI CACGTC 1 cut(s) 247
BmiI GGNNCC 4 cut(s) 252, 540, 606, 708
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 2 cut(s) 219, 480
BsaHI GRCGYC 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 497
Bse1I ACTGG 3 cut(s) 124, 574, 608
BseBI CCWGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 2 cut(s) 421, 497
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 3 cut(s) 124, 574, 608
BseRI GAGGAG 2 cut(s) 243, 650
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 2 cut(s) 538, 706
BsiEI CGRYCG 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 421, 497
BsmAI GTCTC 2 cut(s) 203, 542
BsnI GGCC 1 cut(s) 414
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 378
Bsp143I GATC 6 cut(s) 134, 228, 301, 319, 589, 712
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 252, 540, 606, 708
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 2 cut(s) 538, 706
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 3 cut(s) 124, 574, 608
BssMI GATC 6 cut(s) 134, 228, 301, 319, 589, 712
BssNI GRCGYC 1 cut(s) 707
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 268, 594
BstACI GRCGYC 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 710
BstHHI GCGC 2 cut(s) 63, 709
BstKTI GATC 6 cut(s) 137, 231, 304, 322, 592, 715
BstMAI GTCTC 2 cut(s) 203, 542
BstMBI GATC 6 cut(s) 134, 228, 301, 319, 589, 712
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 425, 637
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 1 cut(s) 414
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 2 cut(s) 63, 709
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 268, 539
CviAII CATG 3 cut(s) 94, 358, 581
CviJI RGCY 9 cut(s) 33, 150, 251, 383, 414, 428, 464, 640, 655
CviKI_1 RGCY 9 cut(s) 33, 150, 251, 383, 414, 428, 464, 640, 655
CviQI GTAC 2 cut(s) 268, 539
DdeI CTNAG 1 cut(s) 191
DinI GGCGCC 1 cut(s) 708
DpnI GATC 6 cut(s) 136, 230, 303, 321, 591, 714
DpnII GATC 6 cut(s) 134, 228, 301, 319, 589, 712
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 268, 594
EarI CTCTTC 2 cut(s) 268, 594
Eco31I GGTCTC 1 cut(s) 203
Eco32I GATATC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 496
EcoRV GATATC 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 708
EheI GGCGCC 1 cut(s) 708
FaeI CATG 3 cut(s) 97, 361, 584
FaiI YATR 6 cut(s) 95, 209, 359, 582, 596, 718
FatI CATG 3 cut(s) 93, 357, 580
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 2 cut(s) 55, 681
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 62, 708
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 2 cut(s) 219, 480
HaeII RGCGCY 1 cut(s) 710
HaeIII GGCC 1 cut(s) 414
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 152
HhaI GCGC 2 cut(s) 63, 709
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 3 cut(s) 97, 361, 584
Hin6I GCGC 2 cut(s) 61, 707
HinP1I GCGC 2 cut(s) 61, 707
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 5 cut(s) 219, 371, 447, 577, 585
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 56, 682
Hpy188I TCNGA 3 cut(s) 194, 228, 370
Hpy188III TCNNGA 4 cut(s) 236, 286, 378, 650
Hpy8I GTNNAC 2 cut(s) 56, 682
Hpy99I CGWCG 2 cut(s) 146, 248
HpyAV CCTTC 5 cut(s) 27, 125, 415, 427, 449
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 2 cut(s) 162, 246
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 637
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 2 cut(s) 162, 246
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 3 cut(s) 97, 361, 584
HspAI GCGC 2 cut(s) 61, 707
KasI GGCGCC 1 cut(s) 706
KpnI GGTACC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 6 cut(s) 134, 228, 301, 319, 589, 712
LmnI GCTCC 2 cut(s) 256, 637
LpnPI CCDG 9 cut(s) 102, 105, 132, 249, 483, 510, 555, 621, 645
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 650
MaeII ACGT 2 cut(s) 162, 246
MaeIII GTNAC 4 cut(s) 115, 179, 220, 343
MalI GATC 6 cut(s) 136, 230, 303, 321, 591, 714
MboI GATC 6 cut(s) 134, 228, 301, 319, 589, 712
MboII GAAGA 5 cut(s) 12, 285, 290, 452, 611
MflI RGATCY 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 1 cut(s) 97
MluNI TGGCCA 1 cut(s) 414
Mly113I GGCGCC 1 cut(s) 707
MlyI GAGTC 3 cut(s) 228, 456, 586
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 9 cut(s) 21, 24, 44, 188, 264, 385, 595, 628, 697
Mox20I TGGCCA 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 609
MscI TGGCCA 1 cut(s) 414
MseI TTAA 4 cut(s) 159, 165, 171, 261
MslI CAYNNNNRTG 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 414
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 425, 637
NarI GGCGCC 1 cut(s) 707
NdeII GATC 6 cut(s) 134, 228, 301, 319, 589, 712
NlaIII CATG 3 cut(s) 97, 361, 584
NlaIV GGNNCC 4 cut(s) 252, 540, 606, 708
NmuCI GTSAC 3 cut(s) 179, 220, 343
PaeR7I CTCGAG 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 371, 585
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 3 cut(s) 227, 455, 585
PluTI GGCGCC 1 cut(s) 710
PpsI GAGTC 3 cut(s) 227, 455, 585
Psp1406I AACGTT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 4 cut(s) 252, 540, 606, 708
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 2 cut(s) 269, 540
RsaNI GTAC 2 cut(s) 268, 539
RseI CAYNNNNRTG 1 cut(s) 506
SalI GTCGAC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 159, 165, 171, 261
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 6 cut(s) 134, 228, 301, 319, 589, 712
SchI GAGTC 3 cut(s) 228, 456, 586
ScrFI CCNGG 1 cut(s) 498
SfaNI GCATC 1 cut(s) 325
SfoI GGCGCC 1 cut(s) 708
Sfr274I CTCGAG 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 1 cut(s) 97
SsiI CCGC 1 cut(s) 59
SspDI GGCGCC 1 cut(s) 706
SspMI CTAG 1 cut(s) 650
StyD4I CCNGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 2 cut(s) 165, 249
TaqI TCGA 5 cut(s) 55, 129, 141, 379, 588
TasI AATT 1 cut(s) 97
TfiI GAWTC 2 cut(s) 371, 585
Tru1I TTAA 4 cut(s) 159, 165, 171, 261
Tru9I TTAA 4 cut(s) 159, 165, 171, 261
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 3 cut(s) 179, 220, 343
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 3 cut(s) 179, 220, 343
TspDTI ATGAA 5 cut(s) 17, 84, 110, 196, 453
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 649
XhoI CTCGAG 1 cut(s) 378
XmiI GTMKAC 2 cut(s) 55, 681
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.