Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Forward (+)

2135928 .. 2136362

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG033100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGAGGACCATGGAGGTTACAATGAACAGAGTCAGTTGGTTGATGATGAGGTCAGGAGCCCGAACCTTGAACTCAATCAAACTCCTGTATTTGGTGCACATGCACCAAGTGCTATCATGCTGGGAGGTGAGACTGTGCAAGGATCCTCAAATTCAACCTGATGATGTGGGTTCTGAAAAGAGTGCATTGGTTCAGGATGTGATAAAGAACCTCGATCTCGAACTCAACGTATTTGCAGAACCTACATTCGCTGCTCGTGATCCAACCAGTATAGAAGAAGAGCCTGCACCAAAGCCAAGCGAGGTGTTCGGGGGAAAGACTGTTGCATCTGAAGGATCCATTCCTTCAGGAATGATCGAACCTCATATCTCTAGTTCTTCTGGTACTGTTAGACACTATGGCATGTGCTATTGGAGATGCCATTCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

5.7

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	140, 153, 257, 333, 346
AcsI	RAATTY	1 cut(s)	153
AcuI	CTGAAG	2 cut(s)	333, 354
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	73, 158
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	98
AlwI	GGATC	5 cut(s)	140, 153, 257, 333, 346
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	102
BamHI	GGATCC	2 cut(s)	145, 338
BanII	GRGCYC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	3 cut(s)	61, 147, 340
BmsI	GCATC	2 cut(s)	338, 410
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	64, 102
Bsp143I	GATC	5 cut(s)	145, 217, 262, 338, 357
Bsp19I	CCATGG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	61, 147, 340
BspPI	GGATC	5 cut(s)	140, 153, 257, 333, 346
BspQI	GCTCTTC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	5 cut(s)	145, 217, 262, 338, 357
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	138, 325, 391
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	5 cut(s)	148, 220, 265, 341, 360
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	5 cut(s)	145, 217, 262, 338, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNSI	RCATGY	2 cut(s)	106, 409
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	2 cut(s)	145, 338
BstYI	RGATCY	2 cut(s)	145, 338
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	4 cut(s)	13, 103, 120, 406
CviJI	RGCY	3 cut(s)	62, 286, 298
CviKI_1	RGCY	3 cut(s)	62, 286, 298
CviQI	GTAC	1 cut(s)	387
DpnI	GATC	5 cut(s)	147, 219, 264, 340, 359
DpnII	GATC	5 cut(s)	145, 217, 262, 338, 357
DraIII	CACNNNGTG	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	333, 354
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	16, 106, 123, 409
FaiI	YATR	7 cut(s)	14, 104, 121, 275, 369, 402, 407
FatI	CATG	4 cut(s)	12, 102, 119, 405
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	16, 106, 123, 409
HinfI	GANTC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	178, 334
Hpy188III	TCNNGA	5 cut(s)	57, 197, 221, 260, 351
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	329, 357
HpyCH4III	ACNGT	3 cut(s)	138, 325, 391
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	7 cut(s)	100, 106, 141, 188, 239, 290, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	16, 106, 123, 409
Kzo9I	GATC	5 cut(s)	145, 217, 262, 338, 357
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	42, 101, 109, 174, 182, 283, 300, 336, 369
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	338, 410
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	5 cut(s)	147, 219, 264, 340, 359
MboI	GATC	5 cut(s)	145, 217, 262, 338, 357
MboII	GAAGA	3 cut(s)	290, 293, 372
MflI	RGATCY	2 cut(s)	145, 338
MhlI	GDGCHC	2 cut(s)	64, 102
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	10, 45, 121, 159, 224, 298, 375
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	5 cut(s)	145, 217, 262, 338, 357
NlaIII	CATG	4 cut(s)	16, 106, 123, 409
NlaIV	GGNNCC	3 cut(s)	61, 147, 340
NspI	RCATGY	2 cut(s)	106, 409
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	61, 147, 340
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	145, 338
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	276
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	5 cut(s)	145, 217, 262, 338, 357
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	64, 102
SfaNI	GCATC	2 cut(s)	338, 410
SinI	GGWCC	1 cut(s)	9
Sse9I	AATT	1 cut(s)	153
SspMI	CTAG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	138, 325, 391
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	216, 222, 360
TasI	AATT	1 cut(s)	153
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	1 cut(s)	153
XceI	RCATGY	2 cut(s)	106, 409
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.