Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009787.1

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Forward (+)

47893 .. 48634

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009787.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgacaaagtccgagaatgatgaagttgttgaacaggaaaaagtgttggaggaagttgaaccggccacaacaataacagagccaactggtgtagaggacaataaagaatcaaaaacagaaacatcatctgaaccaattggtgaggtaccaagcatagacacagtacataaggatcctccaattcaacctcaggctgtgggttctgaaagcccgttgaaactgtatgcaaggctcctcaaattcaacctcatgactgtggatgctgaaaagagtcaattggttgatgatgaggtaaagagtgtgaacgttgaacttaatcaaactcctgtatttgctgaacccgcaaccagttctgtcatactgggagttgagactgtatgtaaggatcctcaaattcgacctgaggatgtgggttctgaaaagagtgcattggttcaggatgtggtaaagagcctagatcttgaactcaaccaaactcctctggttgcagaacctgcattcactgccagtaaaccagttgagaatctgatggaagaagagcccgcaccaaagccgagtcaggtgttggggggaggtactgttgcatctatgggatccattccttcagccatgggtgaaactccttctggtgctgttgagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

22.8

Weight (kDa)

4.21

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	502
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	2 cut(s)	342, 543
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	6 cut(s)	167, 180, 380, 393, 588, 601
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	239, 393
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	3 cut(s)	147, 165, 577
AgsI	TTSAA	7 cut(s)	32, 59, 185, 217, 244, 311, 464
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	6 cut(s)	167, 180, 380, 393, 588, 601
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	239, 393
Asp718I	GGTACC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	152, 626
AxyI	CCTNAGG	2 cut(s)	189, 402
BamHI	GGATCC	3 cut(s)	172, 385, 593
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	543
BccI	CCATC	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	457
BmiI	GGNNCC	5 cut(s)	147, 174, 233, 387, 595
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	250, 593
BmuI	ACTGGG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	609
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	5 cut(s)	91, 348, 366, 507, 515
Bse21I	CCTNAGG	2 cut(s)	189, 402
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	3 cut(s)	265, 412, 445
BseMII	CTCAG	2 cut(s)	203, 393
BseNI	ACTGG	5 cut(s)	91, 348, 366, 507, 515
BseRI	GAGGAG	2 cut(s)	224, 468
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	172, 385, 457, 593
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	2 cut(s)	342, 543
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	202, 394
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	147, 174, 233, 387, 595
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	6 cut(s)	167, 180, 380, 393, 588, 601
BspQI	GCTCTTC	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	5 cut(s)	91, 348, 366, 507, 515
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	4 cut(s)	172, 385, 457, 593
BssT1I	CCWWGG	1 cut(s)	609
Bst4CI	ACNGT	5 cut(s)	163, 222, 256, 376, 580
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	2 cut(s)	494, 503
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	189, 402
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	3 cut(s)	265, 412, 445
BstKTI	GATC	4 cut(s)	175, 388, 460, 596
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	172, 385, 457, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 494, 503
BstX2I	RGATCY	4 cut(s)	172, 385, 457, 593
BstYI	RGATCY	4 cut(s)	172, 385, 457, 593
Bsu36I	CCTNAGG	2 cut(s)	189, 402
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	265, 412, 445
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	146, 164, 576
CviAII	CATG	2 cut(s)	250, 610
CviJI	RGCY	9 cut(s)	65, 82, 194, 210, 232, 453, 541, 553, 608
CviKI_1	RGCY	9 cut(s)	65, 82, 194, 210, 232, 453, 541, 553, 608
CviQI	GTAC	3 cut(s)	146, 164, 576
DdeI	CTNAG	2 cut(s)	189, 402
DpnI	GATC	4 cut(s)	174, 387, 459, 595
DpnII	GATC	4 cut(s)	172, 385, 457, 593
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	588
Eco81I	CCTNAGG	2 cut(s)	189, 402
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	2 cut(s)	253, 613
FaiI	YATR	8 cut(s)	155, 168, 225, 251, 359, 379, 590, 611
FatI	CATG	2 cut(s)	249, 609
FauI	CCCGC	2 cut(s)	349, 550
FokI	GGATG	3 cut(s)	272, 419, 452
FriOI	GRGCYC	1 cut(s)	543
FspBI	CTAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	2 cut(s)	253, 613
HinfI	GANTC	4 cut(s)	107, 271, 523, 556
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	152, 626
Hpy166II	GTNNAC	2 cut(s)	304, 512
Hpy188I	TCNGA	5 cut(s)	13, 130, 205, 418, 528
Hpy188III	TCNNGA	3 cut(s)	250, 437, 461
Hpy8I	GTNNAC	2 cut(s)	304, 512
HpyAV	CCTTC	2 cut(s)	612, 633
HpyCH4III	ACNGT	5 cut(s)	163, 222, 256, 376, 580
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	227, 428, 488, 497, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 494, 503
HpyF3I	CTNAG	2 cut(s)	189, 402
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	253, 613
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	172, 385, 457, 593
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	237
LweI	GCATC	2 cut(s)	250, 593
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	306
MalI	GATC	4 cut(s)	174, 387, 459, 595
MboI	GATC	4 cut(s)	172, 385, 457, 593
MboII	GAAGA	2 cut(s)	545, 548
MfeI	CAATTG	2 cut(s)	135, 275
MflI	RGATCY	4 cut(s)	172, 385, 457, 593
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	5 cut(s)	135, 180, 239, 275, 393
MlyI	GAGTC	2 cut(s)	280, 565
MmeI	TCCRAC	1 cut(s)	27
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	62
MunI	CAATTG	2 cut(s)	135, 275
Mva1269I	GAATGC	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	341, 494, 503
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	4 cut(s)	172, 385, 457, 593
NlaIII	CATG	2 cut(s)	253, 613
NlaIV	GGNNCC	5 cut(s)	147, 174, 233, 387, 595
NmeAIII	GCCGAG	1 cut(s)	579
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	531
PctI	GAATGC	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	107, 523
PflFI	GACNNNGTC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	279, 564
PpsI	GAGTC	2 cut(s)	279, 564
Psp1406I	AACGTT	1 cut(s)	306
PspN4I	GGNNCC	5 cut(s)	147, 174, 233, 387, 595
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	4 cut(s)	172, 385, 457, 593
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	3 cut(s)	147, 165, 577
RsaNI	GTAC	3 cut(s)	146, 164, 576
RseI	CAYNNNNRTG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	172, 385, 457, 593
SchI	GAGTC	2 cut(s)	280, 565
SduI	GDGCHC	1 cut(s)	543
SetI	ASST	9 cut(s)	147, 190, 249, 294, 309, 403, 496, 564, 577
SfaNI	GCATC	2 cut(s)	250, 593
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	135, 180, 239, 275, 393
SsiI	CCGC	2 cut(s)	342, 543
SspMI	CTAG	1 cut(s)	455
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	5 cut(s)	163, 222, 256, 376, 580
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	397
TasI	AATT	5 cut(s)	135, 180, 239, 275, 393
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	107, 523
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	508
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	508
Tth111I	GACNNNGTC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	239, 393
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.