Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Forward (+)

2171794 .. 2172301

Gene Structure 508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG033400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTATATTGATGGAGAGGACCATGGAGGTTACAATGAACAGAGTCAGTTGGTTGATGATGAGGTCAGGAGCCCGAACGTTGAACTTAATCAAACTCCTGTATTTGGTGCACATGCACCAAGTTCTATCATGCTGGGAGGTGAGACTCTGTGCAAGGATCCTCAAATTCAACCTGATGATGTAGATTCTGAAAAGAGTGCATTGGTTCAGGATGTGATAAAGAACATCGATCTCGAACTCAACCTATTTGCAGAACCTACATTCGCTGCTCGTGATCCAACCAGTATAGAAGAAGAGCCTGCACCAAAGCCAAGCGAGGTGTTCGGGGGAGAGACTGTTGCATCTGAAGGATCCATTACTTCAGGAATGATTGAACCTCATATCTCTAGTTCTTCGGGTTCTGTTAGACACTATGGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.03

Weight (kDa)

4.15

Isoelectric Point (pI)

68.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	78
AclWI	GGATC	5 cut(s)	152, 165, 269, 345, 358
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	345, 366
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	83, 170, 374
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	137, 326
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	5 cut(s)	152, 165, 269, 345, 358
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	112
BamHI	GGATCC	2 cut(s)	157, 350
BanII	GRGCYC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	5
BcoDI	GTCTC	2 cut(s)	137, 326
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	3 cut(s)	71, 159, 352
BmsI	GCATC	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	137, 326
Bsp1286I	GDGCHC	2 cut(s)	74, 112
Bsp143I	GATC	4 cut(s)	157, 229, 274, 350
Bsp19I	CCATGG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	71, 159, 352
BspPI	GGATC	5 cut(s)	152, 165, 269, 345, 358
BspQI	GCTCTTC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	4 cut(s)	157, 229, 274, 350
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	4 cut(s)	160, 232, 277, 353
BstMAI	GTCTC	2 cut(s)	137, 326
BstMBI	GATC	4 cut(s)	157, 229, 274, 350
BstNSI	RCATGY	2 cut(s)	116, 421
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	157, 350
BstYI	RGATCY	2 cut(s)	157, 350
Bsu15I	ATCGAT	1 cut(s)	228
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	228
CviAII	CATG	4 cut(s)	23, 113, 130, 418
CviJI	RGCY	3 cut(s)	72, 298, 310
CviKI_1	RGCY	3 cut(s)	72, 298, 310
DpnI	GATC	4 cut(s)	159, 231, 276, 352
DpnII	GATC	4 cut(s)	157, 229, 274, 350
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	345, 366
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	4 cut(s)	26, 116, 133, 421
FaiI	YATR	8 cut(s)	6, 24, 114, 131, 287, 381, 414, 419
FatI	CATG	4 cut(s)	22, 112, 129, 417
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	26, 116, 133, 421
HinfI	GANTC	3 cut(s)	43, 145, 185
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	190, 346
Hpy188III	TCNNGA	5 cut(s)	67, 209, 233, 272, 363
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	7 cut(s)	110, 116, 153, 200, 251, 302, 341
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	26, 116, 133, 421
Kzo9I	GATC	4 cut(s)	157, 229, 274, 350
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	8 cut(s)	52, 111, 119, 186, 194, 295, 312, 348
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	4 cut(s)	159, 231, 276, 352
MboI	GATC	4 cut(s)	157, 229, 274, 350
MboII	GAAGA	3 cut(s)	302, 305, 384
MflI	RGATCY	2 cut(s)	157, 350
MhlI	GDGCHC	2 cut(s)	74, 112
MluCI	AATT	1 cut(s)	165
MlyI	GAGTC	2 cut(s)	52, 139
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	7 cut(s)	10, 20, 55, 131, 171, 310, 387
MseI	TTAA	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	4 cut(s)	157, 229, 274, 350
NlaIII	CATG	4 cut(s)	26, 116, 133, 421
NlaIV	GGNNCC	3 cut(s)	71, 159, 352
NspI	RCATGY	2 cut(s)	116, 421
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	51, 139
PpsI	GAGTC	2 cut(s)	51, 139
Psp1406I	AACGTT	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	71, 159, 352
PspPI	GGNCC	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	157, 350
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	157, 229, 274, 350
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	2 cut(s)	52, 139
SduI	GDGCHC	2 cut(s)	74, 112
SetI	ASST	9 cut(s)	31, 66, 81, 142, 175, 246, 259, 321, 379
SfaNI	GCATC	1 cut(s)	350
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	165
SspMI	CTAG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	228, 234
TasI	AATT	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	2 cut(s)	116, 421
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.