Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Reverse (-)

111027 .. 111569

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004279.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaattttgaactcaaccatattcctgtatttgctgaagctgctcctgcaatggctaccatacaaagcgttgaaactgtatgcaaggctcctcaaattcaacctcagactgtggatactgaaaagagtcaattggttgatgatgaggtaaagagtgtgaacgttgaacttaatcaaactcctgtatttgctgaacccgcaaccagttctgtcatactgggagttgagactgtatgtaaggatcctcaaattcgacctgaggatgtgggttctgaaaagagtgcattggttcaggatgtggtaaagagcctacatcttgagctcaaccaaactcctctggttgcagaacctgcatttgcagccattaaaccagttgacaatctgatggaagaagaggctgcgccaaagccgagtcaggtgttagggggagggactgttgcatctgtaggatccattccttcagccatgggtgaacctccttctggtgctgttgacagtatggaatgtgatattgcagatgccatttcacctgcacaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

18.82

Weight (kDa)

4.14

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	2 cut(s)	358, 538
AciI	CCGC	1 cut(s)	198
AclI	AACGTT	1 cut(s)	162
AclWI	GGATC	4 cut(s)	236, 249, 444, 457
AcsI	RAATTY	3 cut(s)	4, 96, 249
AcuI	CTGAAG	2 cut(s)	57, 444
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	4 cut(s)	11, 74, 101, 167
AluBI	AGCT	2 cut(s)	41, 322
AluI	AGCT	2 cut(s)	41, 322
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	4 cut(s)	236, 249, 444, 457
AlwNI	CAGNNNCTG	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	41, 359, 398
ApoI	RAATTY	3 cut(s)	4, 96, 249
AspLEI	GCGC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	482, 519
AxyI	CCTNAGG	1 cut(s)	258
BamHI	GGATCC	2 cut(s)	241, 449
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	28, 371, 385
BccI	CCATC	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	2 cut(s)	358, 538
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	3 cut(s)	42, 360, 399
BlsI	GCNGC	3 cut(s)	43, 361, 400
BmiI	GGNNCC	3 cut(s)	90, 243, 451
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	449, 508
BmuI	ACTGGG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	3 cut(s)	204, 222, 371
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	268, 301
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	119, 249
BseNI	ACTGG	3 cut(s)	204, 222, 371
BseRI	GAGGAG	2 cut(s)	81, 324
BseXI	GCAGC	3 cut(s)	28, 371, 385
BsgI	GTGCAG	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	241, 449
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	118, 250
BspLI	GGNNCC	3 cut(s)	90, 243, 451
BspMI	ACCTGC	2 cut(s)	358, 538
BspPI	GGATC	4 cut(s)	236, 249, 444, 457
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	3 cut(s)	204, 222, 371
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	2 cut(s)	241, 449
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	5 cut(s)	79, 112, 232, 436, 497
Bst6I	CTCTTC	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	105, 258, 540
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	268, 301
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	2 cut(s)	244, 452
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	241, 449
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 47, 197, 350, 359
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	3 cut(s)	28, 371, 385
BstX2I	RGATCY	2 cut(s)	241, 449
BstYI	RGATCY	2 cut(s)	241, 449
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	268, 301
BveI	ACCTGC	2 cut(s)	358, 538
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	403
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	9 cut(s)	41, 56, 89, 309, 322, 362, 398, 409, 464
CviKI_1	RGCY	9 cut(s)	41, 56, 89, 309, 322, 362, 398, 409, 464
DdeI	CTNAG	3 cut(s)	105, 258, 540
DpnI	GATC	2 cut(s)	243, 451
DpnII	GATC	2 cut(s)	241, 449
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	57, 444
Eco81I	CCTNAGG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	469
FaiI	YATR	7 cut(s)	21, 62, 82, 215, 235, 467, 500
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	1 cut(s)	465
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	42, 360, 399
FokI	GGATG	2 cut(s)	275, 308
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	42, 360, 399
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	3 cut(s)	42, 360, 399
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	2 cut(s)	376, 493
HindII	GTYRAC	2 cut(s)	376, 493
HinfI	GANTC	2 cut(s)	127, 412
HphI	GGTGA	2 cut(s)	482, 519
Hpy166II	GTNNAC	4 cut(s)	160, 376, 473, 493
Hpy188I	TCNGA	3 cut(s)	108, 274, 384
Hpy188III	TCNNGA	2 cut(s)	293, 317
Hpy8I	GTNNAC	4 cut(s)	160, 376, 473, 493
HpyAV	CCTTC	2 cut(s)	468, 489
HpyCH4III	ACNGT	5 cut(s)	79, 112, 232, 436, 497
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	9 cut(s)	50, 84, 284, 344, 353, 359, 440, 515, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 47, 197, 350, 359
HpyF3I	CTNAG	3 cut(s)	105, 258, 540
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	241, 449
LmnI	GCTCC	2 cut(s)	49, 94
Lsp1109I	GCAGC	3 cut(s)	28, 371, 385
LweI	GCATC	2 cut(s)	449, 508
MaeII	ACGT	1 cut(s)	162
MalI	GATC	2 cut(s)	243, 451
MboI	GATC	2 cut(s)	241, 449
MboII	GAAGA	2 cut(s)	401, 404
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	2 cut(s)	241, 449
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	4, 96, 131, 249
MlyI	GAGTC	2 cut(s)	136, 421
MnlI	CCTC	9 cut(s)	102, 114, 139, 253, 255, 345, 388, 422, 486
MseI	TTAA	2 cut(s)	171, 366
MunI	CAATTG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	41, 47, 197, 350, 359
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	2 cut(s)	241, 449
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	3 cut(s)	90, 243, 451
NmeAIII	GCCGAG	1 cut(s)	435
PaqCI	CACCTGC	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	43, 361, 400
PleI	GAGTC	2 cut(s)	135, 420
PpsI	GAGTC	2 cut(s)	135, 420
Psp124BI	GAGCTC	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	90, 243, 451
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	241, 449
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	171, 366
SatI	GCNGC	3 cut(s)	42, 360, 399
Sau3AI	GATC	2 cut(s)	241, 449
SchI	GAGTC	2 cut(s)	136, 421
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	449, 508
SfcI	CTRYAG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	4, 96, 131, 249
SsiI	CCGC	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	5 cut(s)	79, 112, 232, 436, 497
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	4, 96, 131, 249
Tru1I	TTAA	2 cut(s)	171, 366
Tru9I	TTAA	2 cut(s)	171, 366
TseI	GCWGC	3 cut(s)	41, 359, 398
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	3 cut(s)	4, 96, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.