Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Reverse (-)

2110390 .. 2111061

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG032500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACAAAGTCCGAGAATGATGAAGTTGTTGAACAGGAAAAAGTGTTGGAGGAAGTTGAACCGGCCACAACAATAACAGAGCCAACTGGTGTAAAGGACAATAAAGAATCAAAAACAGAAACATCATCTGAACCAATTGGTGAGGTACCAAGCGTAGACACAGTACGTAAGGATCCTCCAATTCAACCTCAGGCTGTGGGTTCTGAAAGCCGTGCATTGGTTCAGGACGAAGATCCTCAAATTCAACCAGAGGATGTGGGTTCTGAAAAGAGTGCATTGGTTCAGGATGTGGTAAAGAGCCTAGATCTTGAACTCAACCAAACTCCTCTGGTTGCAGAACCTGCATTCACTGCCAGTAAACCAGTTGAGAATCTGATGGAAGAAGAGCCCCCACACCAAAGCCGAGTCAGGTGTTGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

4.26

Isoelectric Point (pI)

62.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	156
AclWI	GGATC	3 cut(s)	167, 180, 227
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	2 cut(s)	147, 165
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	5 cut(s)	32, 59, 185, 245, 311
AlwI	GGATC	3 cut(s)	167, 180, 227
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	390
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	147, 174
BsaAI	YACGTR	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	91, 354, 362
Bse21I	CCTNAGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	259, 292
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	3 cut(s)	91, 354, 362
BseRI	GAGGAG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	172, 232, 304
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	147, 174
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	3 cut(s)	167, 180, 227
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	91, 354, 362
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	3 cut(s)	172, 232, 304
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	378
BstAPI	GCANNNNNTGC	2 cut(s)	341, 350
BstBAI	YACGTR	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	259, 292
BstKTI	GATC	3 cut(s)	175, 235, 307
BstMBI	GATC	3 cut(s)	172, 232, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 350
BstSNI	TACGTA	1 cut(s)	167
BstX2I	RGATCY	3 cut(s)	172, 232, 304
BstYI	RGATCY	3 cut(s)	172, 232, 304
Bsu36I	CCTNAGG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	259, 292
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	146, 164
CviJI	RGCY	7 cut(s)	65, 82, 194, 210, 300, 388, 402
CviKI_1	RGCY	7 cut(s)	65, 82, 194, 210, 300, 388, 402
CviQI	GTAC	2 cut(s)	146, 164
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	174, 234, 306
DpnII	GATC	3 cut(s)	172, 232, 304
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	156
FokI	GGATG	2 cut(s)	266, 299
FriOI	GRGCYC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	62
HinfI	GANTC	3 cut(s)	107, 370, 405
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	157, 359
Hpy188I	TCNGA	5 cut(s)	13, 130, 205, 265, 375
Hpy188III	TCNNGA	3 cut(s)	224, 284, 308
Hpy8I	GTNNAC	2 cut(s)	157, 359
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	215, 275, 335, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 350
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	166
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	172, 232, 304
LguI	GCTCTTC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	166
MalI	GATC	3 cut(s)	174, 234, 306
MboI	GATC	3 cut(s)	172, 232, 304
MboII	GAAGA	3 cut(s)	242, 392, 395
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	3 cut(s)	172, 232, 304
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	3 cut(s)	135, 180, 240
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	7 cut(s)	43, 136, 186, 198, 244, 246, 336
MspI	CCGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	341, 350
NdeII	GATC	3 cut(s)	172, 232, 304
NlaIV	GGNNCC	2 cut(s)	147, 174
PciSI	GCTCTTC	1 cut(s)	378
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	107, 370
PflFI	GACNNNGTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	147, 174
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	3 cut(s)	172, 232, 304
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	147, 165
RsaNI	GTAC	2 cut(s)	146, 164
SapI	GCTCTTC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	172, 232, 304
SchI	GAGTC	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	5 cut(s)	147, 169, 190, 343, 413
SnaBI	TACGTA	1 cut(s)	167
Sse9I	AATT	3 cut(s)	135, 180, 240
SspMI	CTAG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	169
TasI	AATT	3 cut(s)	135, 180, 240
TfiI	GAWTC	2 cut(s)	107, 370
TscAI	CASTG	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.