Rmu_sc0009787.1_g000012

DNA binding domain with preference for A/T rich regions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009787.1
OG0001372
Physical Location & Seq
Forward (+)
47246 .. 47785
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009787.1_g000012.1.cds

Sequence Viewer

Length: 540 bp
atgcctgcaataccaggacctgacagtttgaagaaaaacaagcagagtgcgggtactaacgatgatgtcgaagatgaaatggtgggtcgggtggtttctggtgttattgaaggttcatttgatgccggctatcttctgaatgttgaggtagaagacacagacactcagctgagggctgttgtatttctaccaggaaagttcactccagtcactgcagcaaatgatgttgctcctaatgttaagatgtgcaaaagaaaagaagttccaataccagctgtcaacctgcaatctcatctttatggttctgcccgcccatcagagcaaagtaacaggcaaccttctgacatgaaaaagcaaatacctgcagttccagaccaaattccacccgtattcctcagcgtggcatcccggagtctcttagaagtcaatctttctctggcatcctggagtctcttagccaacgcatcttggagtctcttagaagtcgatctttctctggcatcccggagtctcttagaagccaaccaacctcttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.28

Weight (kDa)

4.89

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 291, 370
AciI CCGC 2 cut(s) 50, 310
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 2 cut(s) 31, 110
AjnI CCWGG 3 cut(s) 13, 190, 443
AluBI AGCT 2 cut(s) 169, 275
AluI AGCT 2 cut(s) 169, 275
Alw26I GTCTC 4 cut(s) 419, 455, 479, 515
AlwNI CAGNNNCTG 2 cut(s) 20, 212
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 409, 505
AvaII GGWCC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbsI GAAGAC 1 cut(s) 159
BbvCI CCTCAGC 2 cut(s) 170, 395
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 322
BciT130I CCWGG 3 cut(s) 15, 192, 445
BcnI CCSGG 2 cut(s) 409, 505
BcoDI GTCTC 4 cut(s) 419, 455, 479, 515
BfmI CTRYAG 2 cut(s) 213, 363
BfuAI ACCTGC 2 cut(s) 291, 370
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 5 cut(s) 15, 192, 409, 445, 505
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 5 cut(s) 15, 192, 409, 445, 505
BmsI GCATC 5 cut(s) 112, 413, 449, 473, 509
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 189, 466
Bpu10I CCTNAGC 2 cut(s) 170, 395
BpuMI CCSGG 2 cut(s) 409, 505
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 3 cut(s) 15, 192, 445
BseGI GGATG 3 cut(s) 404, 440, 500
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 161, 179, 409
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 227
BsiSI CCGG 3 cut(s) 126, 409, 505
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 4 cut(s) 419, 455, 479, 515
Bsp143I GATC 1 cut(s) 487
BspACI CCGC 2 cut(s) 50, 310
BspCNI CTCAG 3 cut(s) 162, 178, 408
BspMAI CTGCAG 2 cut(s) 217, 367
BspMI ACCTGC 2 cut(s) 291, 370
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 125
BssMI GATC 1 cut(s) 487
Bst2UI CCWGG 3 cut(s) 15, 192, 445
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 6, 127, 310
BstDEI CTNAG 7 cut(s) 165, 170, 395, 418, 454, 478, 514
BstF5I GGATG 3 cut(s) 404, 440, 500
BstKTI GATC 1 cut(s) 490
BstMAI GTCTC 4 cut(s) 419, 455, 479, 515
BstMBI GATC 1 cut(s) 487
BstNI CCWGG 3 cut(s) 15, 192, 445
BstSCI CCNGG 5 cut(s) 13, 190, 407, 443, 503
BstSFI CTRYAG 2 cut(s) 213, 363
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 159
BtsCI GGATG 3 cut(s) 404, 440, 500
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 2 cut(s) 291, 370
Cac8I GCNNGC 3 cut(s) 6, 127, 310
CaiI CAGNNNCTG 2 cut(s) 20, 212
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 346
CviJI RGCY 6 cut(s) 129, 169, 176, 275, 458, 521
CviKI_1 RGCY 6 cut(s) 129, 169, 176, 275, 458, 521
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 7 cut(s) 165, 170, 395, 418, 454, 478, 514
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 3 cut(s) 13, 190, 443
FaeI CATG 1 cut(s) 349
FaiI YATR 2 cut(s) 300, 347
FalI AAGNNNNNCTT 4 cut(s) 414, 446, 474, 506
FatI CATG 1 cut(s) 345
FauI CCCGC 2 cut(s) 43, 317
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 3 cut(s) 391, 427, 487
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 2 cut(s) 189, 466
HapII CCGG 3 cut(s) 126, 409, 505
Hin1II CATG 1 cut(s) 349
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 4 cut(s) 412, 448, 472, 508
HpaII CCGG 3 cut(s) 126, 409, 505
Hpy166II GTNNAC 2 cut(s) 201, 280
Hpy188I TCNGA 3 cut(s) 138, 319, 343
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 2 cut(s) 201, 280
HpyAV CCTTC 2 cut(s) 104, 348
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 5 cut(s) 8, 215, 249, 286, 365
HpyF3I CTNAG 7 cut(s) 165, 170, 395, 418, 454, 478, 514
Hsp92II CATG 1 cut(s) 349
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 487
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 5 cut(s) 112, 413, 449, 473, 509
MaeIII GTNAC 2 cut(s) 208, 326
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 4 cut(s) 43, 83, 125, 164
MluCI AATT 1 cut(s) 378
MlyI GAGTC 4 cut(s) 421, 457, 481, 517
MnlI CCTC 4 cut(s) 139, 165, 404, 540
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 2 cut(s) 169, 275
MspI CCGG 3 cut(s) 126, 409, 505
MspR9I CCNGG 5 cut(s) 15, 192, 409, 445, 505
MvaI CCWGG 3 cut(s) 15, 192, 445
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 2 cut(s) 409, 505
NdeII GATC 1 cut(s) 487
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 127
PfoI TCCNGGA 3 cut(s) 407, 443, 503
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 4 cut(s) 420, 456, 480, 516
PpsI GAGTC 4 cut(s) 420, 456, 480, 516
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 13, 190, 443
PspGI CCWGG 3 cut(s) 13, 190, 443
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 2 cut(s) 217, 367
PstNI CAGNNNCTG 2 cut(s) 20, 212
PvuII CAGCTG 2 cut(s) 169, 275
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 487
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 4 cut(s) 421, 457, 481, 517
ScrFI CCNGG 5 cut(s) 15, 192, 409, 445, 505
SetI ASST 9 cut(s) 22, 115, 150, 171, 277, 285, 340, 364, 532
SfaNI GCATC 5 cut(s) 112, 413, 449, 473, 509
SfcI CTRYAG 2 cut(s) 213, 363
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 1 cut(s) 378
SsiI CCGC 2 cut(s) 50, 310
StyD4I CCNGG 5 cut(s) 13, 190, 407, 443, 503
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 69, 486
TasI AATT 1 cut(s) 378
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 90, 105, 362
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.