Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Reverse (-)

86638 .. 86931

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004279.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgctgggaggtgagactgtgtgcaaggatcctcaaattcaacctgatgatgtgggttctgaaaagagtgcattggttcaggatgtgataaagaacctcgatctcgaactcaacgtatttgcagaacctacattagctgctcgtgatccaaccagtatagaagaagagcctgcaccaaagccaagcgaggtgttcgggggaaagactgttgcatctgaaggatccattccttcaggaatgatcgaacctcatatctctagttcttctggtactgttagacactatggcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.22

Weight (kDa)

4.42

Isoelectric Point (pI)

64.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	23, 36, 140, 216, 229
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	216, 237
AfaI	GTAC	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	5 cut(s)	23, 36, 140, 216, 229
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	23
BamHI	GGATCC	2 cut(s)	28, 221
BauI	CACGAG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	30, 223
BmsI	GCATC	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	28, 100, 145, 221, 240
BspLI	GGNNCC	2 cut(s)	30, 223
BspPI	GGATC	5 cut(s)	23, 36, 140, 216, 229
BspQI	GCTCTTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	5 cut(s)	28, 100, 145, 221, 240
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	19, 208, 274
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	31, 103, 148, 224, 243
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	5 cut(s)	28, 100, 145, 221, 240
BstNSI	RCATGY	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	28, 221
BstYI	RGATCY	2 cut(s)	28, 221
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	3 cut(s)	137, 169, 181
CviKI_1	RGCY	3 cut(s)	137, 169, 181
CviQI	GTAC	1 cut(s)	270
DpnI	GATC	5 cut(s)	30, 102, 147, 223, 242
DpnII	GATC	5 cut(s)	28, 100, 145, 221, 240
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	216, 237
FaeI	CATG	1 cut(s)	292
FaiI	YATR	4 cut(s)	158, 252, 285, 290
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	292
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	61, 217
Hpy188III	TCNNGA	4 cut(s)	80, 104, 143, 234
HpyAV	CCTTC	2 cut(s)	212, 240
HpyCH4III	ACNGT	3 cut(s)	19, 208, 274
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	24, 71, 122, 173, 212
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	28, 100, 145, 221, 240
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	6 cut(s)	57, 65, 166, 183, 219, 252
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	114
MalI	GATC	5 cut(s)	30, 102, 147, 223, 242
MboI	GATC	5 cut(s)	28, 100, 145, 221, 240
MboII	GAAGA	3 cut(s)	173, 176, 255
MflI	RGATCY	2 cut(s)	28, 221
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	42, 107, 181, 258
NdeII	GATC	5 cut(s)	28, 100, 145, 221, 240
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	30, 223
NspI	RCATGY	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	30, 223
PsuI	RGATCY	2 cut(s)	28, 221
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	5 cut(s)	28, 100, 145, 221, 240
SetI	ASST	8 cut(s)	13, 46, 99, 117, 130, 139, 192, 250
SfaNI	GCATC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	19, 208, 274
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	99, 105, 243
TasI	AATT	1 cut(s)	36
TseI	GCWGC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.