Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009787.1

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Reverse (-)

20299 .. 20926

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009787.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgccatcaggcggagtgacaagcgatgcaaccaagtcacatgttggggatccttcgaccacttctcatgatggagaggaccatggaggttacaatgaacagagtcagttggttgatgatgaggtcaggagcccgaaccttgaactcaatcaaactcctgtatttggtgcacatgcaccaagtgctatcatgctgggaggtgagactgtgtgcaaggatcctcaaattcaacctgatgatgtgggttctgaaaagagtgcattggttcaggatgtgataaagaacctcgatctcgaactcaacgtatttgcagaacctacattagctgctcgtgatccaaccagtatagaagaagagcctgcaccaaagccaagcgaggtgttcgggggaaagactgttgcatctgaaggatccattccttcaggaatgaccgaacctcatatctctagttcttctggtactgtcagacactatggcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

16.74

Weight (kDa)

4.41

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	7 cut(s)	44, 57, 212, 225, 329, 405, 418
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	2 cut(s)	405, 426
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	11, 164
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	143, 230
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	7 cut(s)	44, 57, 212, 225, 329, 405, 418
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	172
BamHI	GGATCC	3 cut(s)	49, 217, 410
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	13, 65
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	447
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	4 cut(s)	51, 131, 219, 412
BmsI	GCATC	2 cut(s)	16, 410
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 164
Bse1I	ACTGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	11, 164
BseNI	ACTGG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	11, 164
BsmAI	GTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	134, 172
Bsp143I	GATC	5 cut(s)	49, 217, 289, 334, 410
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	51, 131, 219, 412
BspPI	GGATC	7 cut(s)	44, 57, 212, 225, 329, 405, 418
BspQI	GCTCTTC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	5 cut(s)	49, 217, 289, 334, 410
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	208, 397, 463
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	5 cut(s)	52, 220, 292, 337, 413
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	5 cut(s)	49, 217, 289, 334, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNSI	RCATGY	3 cut(s)	44, 176, 481
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	3 cut(s)	49, 217, 410
BstYI	RGATCY	3 cut(s)	49, 217, 410
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	360
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	6 cut(s)	41, 68, 83, 173, 190, 478
CviJI	RGCY	4 cut(s)	132, 326, 358, 370
CviKI_1	RGCY	4 cut(s)	132, 326, 358, 370
CviQI	GTAC	1 cut(s)	459
DpnI	GATC	5 cut(s)	51, 219, 291, 336, 412
DpnII	GATC	5 cut(s)	49, 217, 289, 334, 410
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	405, 426
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	6 cut(s)	44, 71, 86, 176, 193, 481
FaiI	YATR	9 cut(s)	42, 69, 84, 174, 191, 347, 441, 474, 479
FatI	CATG	6 cut(s)	40, 67, 82, 172, 189, 477
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	44, 71, 86, 176, 193, 481
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	3 cut(s)	250, 406, 467
Hpy188III	TCNNGA	6 cut(s)	68, 127, 269, 293, 332, 423
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	63, 401, 429
HpyCH4III	ACNGT	3 cut(s)	208, 397, 463
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	8 cut(s)	29, 170, 176, 213, 260, 311, 362, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	6 cut(s)	44, 71, 86, 176, 193, 481
Kzo9I	GATC	5 cut(s)	49, 217, 289, 334, 410
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	112, 171, 179, 246, 254, 355, 372, 408, 441
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	16, 410
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	16, 36, 89
MalI	GATC	5 cut(s)	51, 219, 291, 336, 412
MboI	GATC	5 cut(s)	49, 217, 289, 334, 410
MboII	GAAGA	3 cut(s)	362, 365, 444
MflI	RGATCY	3 cut(s)	49, 217, 410
MhlI	GDGCHC	2 cut(s)	134, 172
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	8 cut(s)	70, 80, 115, 191, 231, 296, 370, 447
MwoI	GCNNNNNNNGC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	5 cut(s)	49, 217, 289, 334, 410
NlaIII	CATG	6 cut(s)	44, 71, 86, 176, 193, 481
NlaIV	GGNNCC	4 cut(s)	51, 131, 219, 412
NmuCI	GTSAC	2 cut(s)	16, 36
NspI	RCATGY	3 cut(s)	44, 176, 481
PagI	TCATGA	1 cut(s)	67
PciI	ACATGT	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PscI	ACATGT	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	51, 131, 219, 412
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	3 cut(s)	49, 217, 410
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	348
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	5 cut(s)	49, 217, 289, 334, 410
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	134, 172
SfaNI	GCATC	2 cut(s)	16, 410
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	3 cut(s)	208, 397, 463
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	56, 288, 294
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	16, 36
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	2 cut(s)	16, 36
TspDTI	ATGAA	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	3 cut(s)	44, 176, 481
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.