Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Forward (+)

2579379 .. 2580084

Gene Structure 706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGTATTGCTGTTCTTGGACTCTTCGTGATGAATTGGTGCTTCACATATCTAACTTCGGGGTTCCTTCGACCACTTCTCATGATGGAGAGGACCATGGAGGTTACAATGAACAGAGTCGGTTGTTTGATGATGAGGCCAGAAGCCCGAACCTTGAACTCAATCAAACTCCTGTATTTGGTGCACATGCACCAAGTGCTATCATGCTGGGAGAACCTACATTCACTGCTCGTGATCCAACCAGTATAGAAGAAGAGCCTGCACCAAATCCAAGCGAGGTGTTCGGGGGAAAGACTGTTGCATCTGAAGGATCCATTCCTTCAGGAATGATCGAACCTCATATCTCTAGTTCTTCTGGTACTGTTAGACACTATGGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.71

Weight (kDa)

4.61

Isoelectric Point (pI)

69.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	230, 306, 319
AcuI	CTGAAG	2 cut(s)	306, 327
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	230, 306, 319
AoxI	GGCC	1 cut(s)	138
ApaLI	GTGCAC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	187
BamHI	GGATCC	1 cut(s)	311
BauI	CACGAG	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	187
BccI	CCATC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	66, 313
BmsI	GCATC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	179
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	235, 311, 330
Bsp19I	CCATGG	1 cut(s)	97
BspANI	GGCC	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	66, 313
BspPI	GGATC	3 cut(s)	230, 306, 319
BspQI	GCTCTTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	3 cut(s)	235, 311, 330
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	298, 364
Bst6I	CTCTTC	2 cut(s)	30, 249
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	97
BstKTI	GATC	3 cut(s)	238, 314, 333
BstMBI	GATC	3 cut(s)	235, 311, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	191, 382
BstSLI	GKGCMC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	5 cut(s)	83, 98, 188, 205, 379
CviJI	RGCY	3 cut(s)	140, 147, 259
CviKI_1	RGCY	3 cut(s)	140, 147, 259
CviQI	GTAC	1 cut(s)	360
DpnI	GATC	3 cut(s)	237, 313, 332
DpnII	GATC	3 cut(s)	235, 311, 330
DraIII	CACNNNGTG	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	30, 249
EarI	CTCTTC	2 cut(s)	30, 249
Eco130I	CCWWGG	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	306, 327
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	5 cut(s)	86, 101, 191, 208, 382
FaiI	YATR	9 cut(s)	50, 84, 99, 189, 206, 248, 342, 375, 380
FatI	CATG	5 cut(s)	82, 97, 187, 204, 378
FspBI	CTAG	1 cut(s)	348
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	5 cut(s)	86, 101, 191, 208, 382
HinfI	GANTC	2 cut(s)	22, 118
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	29, 83, 233, 324
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	78, 302, 330
HpyCH4III	ACNGT	2 cut(s)	298, 364
HpyCH4V	TGCA	5 cut(s)	4, 185, 191, 263, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Hsp92II	CATG	5 cut(s)	86, 101, 191, 208, 382
Kzo9I	GATC	3 cut(s)	235, 311, 330
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	7 cut(s)	154, 186, 194, 256, 273, 309, 342
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	3 cut(s)	237, 313, 332
MboI	GATC	3 cut(s)	235, 311, 330
MboII	GAAGA	4 cut(s)	17, 263, 266, 345
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	16, 127
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	5 cut(s)	85, 95, 130, 271, 348
MwoI	GCNNNNNNNGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	235, 311, 330
NlaIII	CATG	5 cut(s)	86, 101, 191, 208, 382
NlaIV	GGNNCC	2 cut(s)	66, 313
NspI	RCATGY	2 cut(s)	191, 382
PagI	TCATGA	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	249
PleI	GAGTC	2 cut(s)	16, 126
PpsI	GAGTC	2 cut(s)	16, 126
PspFI	CCCAGC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	66, 313
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	235, 311, 330
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	2 cut(s)	16, 127
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	5 cut(s)	106, 156, 220, 282, 340
SfaNI	GCATC	1 cut(s)	311
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	35
SspMI	CTAG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	298, 364
TaqI	TCGA	2 cut(s)	71, 333
TasI	AATT	1 cut(s)	35
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	48, 126
TspRI	CASTG	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	94
XceI	RCATGY	2 cut(s)	191, 382
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.