Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Forward (+)

111655 .. 112338

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004279.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgcttagtaccgcaataacagagccaactggtgtagaggacaataaagaatcaaaaacagaaacatcatctgaaccaattggtgaggtaccaagcatagacacagtacataaggatcctccaattcaacctcaggctgtgggttctgaaagccgtgcattggttcaggacgaagtaaagagcctgaattttgaagtcaaccaaactcctgtatttgctgaagctgcttctgcaatgactatcataccaagcgttgaaactgtatgcaaggctcctcaaattcaacctcagactgtggatactgaaaagagtcaattggttgatgatgaggtaaagagtgtgaacgttgaacttaatcaaactcctgtatttgctgaacccgcaaccagttctgtcatactgggagttgagactgtatgtaaggatcctcaaattcgacctgaggatgtgggttctgaaaagagtgcattggttcaggatgtggtaaagagcctagatcttgaactcaaccaaactcctctggttgcagaacctgcattcactgccagtaaaccagttgagaatctgatggaagaagagcccgcaccaaagccgagtcaggtgttggggggaggtactgttgcatctatgggatccattccttcagccatgggtgaaactccttctggtgctgttgagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

23.89

Weight (kDa)

4.17

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	541
Acc65I	GGTACC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	3 cut(s)	12, 381, 582
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	6 cut(s)	110, 123, 419, 432, 627, 640
AcsI	RAATTY	3 cut(s)	187, 279, 432
AcuI	CTGAAG	2 cut(s)	240, 627
AfaI	GTAC	4 cut(s)	10, 90, 108, 616
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	6 cut(s)	128, 194, 257, 284, 350, 503
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	6 cut(s)	110, 123, 419, 432, 627, 640
AlwNI	CAGNNNCTG	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	3 cut(s)	187, 279, 432
Asp718I	GGTACC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	95, 665
AxyI	CCTNAGG	2 cut(s)	132, 441
BamHI	GGATCC	3 cut(s)	115, 424, 632
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmiI	GGNNCC	5 cut(s)	90, 117, 273, 426, 634
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	632
BmuI	ACTGGG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	5 cut(s)	34, 387, 405, 546, 554
Bse21I	CCTNAGG	2 cut(s)	132, 441
Bse3DI	GCAATG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	2 cut(s)	451, 484
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	3 cut(s)	146, 302, 432
BseNI	ACTGG	5 cut(s)	34, 387, 405, 546, 554
BseRI	GAGGAG	2 cut(s)	264, 507
BseXI	GCAGC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	115, 424, 496, 632
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	3 cut(s)	12, 381, 582
BspCNI	CTCAG	3 cut(s)	145, 301, 433
BspLI	GGNNCC	5 cut(s)	90, 117, 273, 426, 634
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	6 cut(s)	110, 123, 419, 432, 627, 640
BspQI	GCTCTTC	1 cut(s)	570
BspT107I	GGYRCC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	5 cut(s)	34, 387, 405, 546, 554
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	4 cut(s)	115, 424, 496, 632
BssT1I	CCWWGG	1 cut(s)	648
Bst4CI	ACNGT	5 cut(s)	106, 262, 295, 415, 619
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	2 cut(s)	533, 542
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	4 cut(s)	5, 132, 288, 441
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	451, 484
BstKTI	GATC	4 cut(s)	118, 427, 499, 635
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	4 cut(s)	115, 424, 496, 632
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 230, 380, 533, 542
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	4 cut(s)	115, 424, 496, 632
BstYI	RGATCY	4 cut(s)	115, 424, 496, 632
Bsu36I	CCTNAGG	2 cut(s)	132, 441
BsuI	GTATCC	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	451, 484
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	582
CaiI	CAGNNNCTG	1 cut(s)	533
Csp6I	GTAC	4 cut(s)	9, 89, 107, 615
CviAII	CATG	1 cut(s)	649
CviQI	GTAC	4 cut(s)	9, 89, 107, 615
DdeI	CTNAG	4 cut(s)	5, 132, 288, 441
DpnI	GATC	4 cut(s)	117, 426, 498, 634
DpnII	GATC	4 cut(s)	115, 424, 496, 632
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	582
Eco57I	CTGAAG	2 cut(s)	240, 627
Eco81I	CCTNAGG	2 cut(s)	132, 441
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	1 cut(s)	652
FaiI	YATR	8 cut(s)	98, 111, 245, 265, 398, 418, 629, 650
FatI	CATG	1 cut(s)	648
FauI	CCCGC	2 cut(s)	388, 589
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	458, 491
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	652
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	50, 310, 562, 595
HphI	GGTGA	2 cut(s)	95, 665
Hpy166II	GTNNAC	3 cut(s)	199, 343, 551
Hpy188I	TCNGA	5 cut(s)	73, 148, 291, 457, 567
Hpy188III	TCNNGA	3 cut(s)	167, 476, 500
Hpy8I	GTNNAC	3 cut(s)	199, 343, 551
HpyAV	CCTTC	2 cut(s)	651, 672
HpyCH4III	ACNGT	5 cut(s)	106, 262, 295, 415, 619
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	158, 233, 267, 467, 527, 536, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 230, 380, 533, 542
HpyF3I	CTNAG	4 cut(s)	5, 132, 288, 441
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	652
KpnI	GGTACC	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	115, 424, 496, 632
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	345
MalI	GATC	4 cut(s)	117, 426, 498, 634
MboI	GATC	4 cut(s)	115, 424, 496, 632
MboII	GAAGA	2 cut(s)	584, 587
MfeI	CAATTG	2 cut(s)	78, 314
MflI	RGATCY	4 cut(s)	115, 424, 496, 632
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	6 cut(s)	78, 123, 187, 279, 314, 432
MlyI	GAGTC	2 cut(s)	319, 604
MseI	TTAA	1 cut(s)	354
MunI	CAATTG	2 cut(s)	78, 314
Mva1269I	GAATGC	1 cut(s)	536
MwoI	GCNNNNNNNGC	5 cut(s)	224, 230, 380, 533, 542
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	4 cut(s)	115, 424, 496, 632
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	5 cut(s)	90, 117, 273, 426, 634
NmeAIII	GCCGAG	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	570
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	50, 562
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	318, 603
PpsI	GAGTC	2 cut(s)	318, 603
Psp1406I	AACGTT	1 cut(s)	345
PspN4I	GGNNCC	5 cut(s)	90, 117, 273, 426, 634
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	4 cut(s)	115, 424, 496, 632
RsaI	GTAC	4 cut(s)	10, 90, 108, 616
RsaNI	GTAC	4 cut(s)	9, 89, 107, 615
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	115, 424, 496, 632
SchI	GAGTC	2 cut(s)	319, 604
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	632
Sse9I	AATT	6 cut(s)	78, 123, 187, 279, 314, 432
SsiI	CCGC	3 cut(s)	12, 381, 582
SspMI	CTAG	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	5 cut(s)	106, 262, 295, 415, 619
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	436
TasI	AATT	6 cut(s)	78, 123, 187, 279, 314, 432
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	50, 562
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	1 cut(s)	224
TspRI	CASTG	1 cut(s)	547
XapI	RAATTY	3 cut(s)	187, 279, 432
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.