Rmu_sc0009787.1_g000014

DNA binding domain with preference for A/T rich regions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009787.1
OG0001372
Physical Location & Seq
Reverse (-)
50010 .. 51440
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009787.1_g000014.1.cds

Sequence Viewer

Length: 1431 bp
atgcctgcaatgccaggacctgatagttcgaagaaaaacaaacagagtgcgggtactaacgatgatggtgaagatgaaatggtgggtcgagtggtttctggtgttattgaaggttcatttgatgccggctatcttctgaatgttaaggtagaaggcaccgatactcagctgaggggtgttgtatttcttccgggaaagttcactccagtcactgcagcaaatgatgttgttcctaatgttaagatgtgcaaaagaaaagaagttccaataccagctgtcaacctgccatctcatctttatggttctgcccggccatcagagcaaagtaacaggccacctgttgaggtgaaaaagcaaatacctgcaattccagaccaaattcctccccgtattcctcagtgtggcatcccggagactcttagaagtcaatctttctctggcatcccagagtctcttcaatgccaacgcatccaggagtctcttagaagtcaatctttccctggcatcccggagtctcttagccaaccatcctcttttgtaaatcttccggttgataatttgccaaagaatgatgcccctgtcttgggaggtaaagtcacaccacagcaacctttggatcctggacttgataaccaatccatccatgtaatgacaaagtccgagaatgatgaagttgttgaacaggaaaaagtgttggaggaagttgaaccggccacaacaataacagagccaactggtgtagaggacaataaagaatcaaagacagaatcatcatctgaaccaattggtgaggtactaagcatagacacagtatgtaaggatcctccaattcaacctcaggctgtgggttctgaaagcagtgcattggttcaggacgacgtaaagagcatgaattttgaactcaaccatattcctgtatttgctgaagctgctcctgcaatggctaccatacaaagcgttgaaactgtatgcaaggctcctcaaattcaacctcagactgtggatactgaaaagagtcaattggttgatgatgaggtaaagagtgtgaacgttgaacttaatcaaactcatgtatttgctgaacccgcaaccagttctgtcatactgggagttgagactgtatgtaaggatcctcaaattcgacctgaggatgtgggttctgaaaagagtgcattggttcaggatgtggtaaagagcctacatcttgagctcaaccaaactcctctggttgcagaacctgcatttgcagccattaaaccagttgacaatctgatggaagaagaggctgcgccaaagccgagtcaggtgttagggggagggactgttgcatctgtaggatccattccttcagccatgggtgaacctccttctggtgctgttgacagtatggaatgtgatattgcagatgccatttcacctgcacaatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

50.56

Weight (kDa)

4.45

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1426
Acc36I ACCTGC 4 cut(s) 291, 370, 1246, 1426
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 2 cut(s) 50, 1086
AclI AACGTT 1 cut(s) 1050
AclWI GGATC 8 cut(s) 611, 624, 815, 828, 1124, 1137, 1332, 1345
AcoI YGGCCR 2 cut(s) 311, 711
AcsI RAATTY 4 cut(s) 378, 892, 984, 1137
AcuI CTGAAG 2 cut(s) 945, 1332
AfaI GTAC 2 cut(s) 55, 795
AfiI CCNNNNNNNGG 4 cut(s) 401, 583, 584, 1370
AgsI TTSAA 9 cut(s) 110, 458, 680, 707, 833, 899, 962, 989, 1055
AjnI CCWGG 4 cut(s) 13, 471, 499, 619
AluBI AGCT 4 cut(s) 169, 275, 929, 1210
AluI AGCT 4 cut(s) 169, 275, 929, 1210
Alw21I GWGCWC 1 cut(s) 1212
Alw26I GTCTC 5 cut(s) 407, 456, 483, 519, 1109
AlwI GGATC 8 cut(s) 611, 624, 815, 828, 1124, 1137, 1332, 1345
AlwNI CAGNNNCTG 3 cut(s) 20, 212, 1238
AoxI GGCC 3 cut(s) 311, 332, 711
ApeKI GCWGC 4 cut(s) 215, 929, 1247, 1286
ApoI RAATTY 4 cut(s) 378, 892, 984, 1137
AspLEI GCGC 1 cut(s) 1291
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 4 cut(s) 192, 310, 410, 509
AsuHPI GGTGA 5 cut(s) 80, 358, 800, 1370, 1407
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 17
AxyI CCTNAGG 2 cut(s) 837, 1146
BamHI GGATCC 4 cut(s) 616, 820, 1129, 1337
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 1212
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
Bbv12I GWGCWC 1 cut(s) 1212
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 227, 916, 1259, 1273
BccI CCATC 6 cut(s) 59, 295, 322, 535, 647, 1267
BciT130I CCWGG 4 cut(s) 15, 473, 501, 621
BciVI GTATCC 1 cut(s) 997
BcnI CCSGG 4 cut(s) 192, 310, 410, 509
BcoDI GTCTC 5 cut(s) 407, 456, 483, 519, 1109
BfmI CTRYAG 2 cut(s) 213, 1332
BfuAI ACCTGC 4 cut(s) 291, 370, 1246, 1426
BfuI GTATCC 1 cut(s) 997
BisI GCNGC 4 cut(s) 216, 930, 1248, 1287
BlsI GCNGC 4 cut(s) 217, 931, 1249, 1288
Bme1390I CCNGG 8 cut(s) 15, 192, 310, 410, 473, 501, 509, 621
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 6 cut(s) 157, 618, 822, 978, 1131, 1339
BmrFI CCNGG 8 cut(s) 15, 192, 310, 410, 473, 501, 509, 621
BmrI ACTGGG 1 cut(s) 1115
BmsI GCATC 8 cut(s) 112, 414, 450, 477, 513, 562, 1337, 1396
BmuI ACTGGG 1 cut(s) 1115
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 1226
BpuMI CCSGG 4 cut(s) 192, 310, 410, 509
BsaJI CCNNGG 2 cut(s) 499, 1353
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 4 cut(s) 579, 609, 1308, 1338
Bsc4I CCNNNNNNNGG 4 cut(s) 401, 583, 584, 1370
Bse118I RCCGGY 2 cut(s) 125, 709
Bse1I ACTGG 5 cut(s) 206, 739, 1092, 1110, 1259
Bse21I CCTNAGG 2 cut(s) 837, 1146
Bse3DI GCAATG 2 cut(s) 15, 945
BseBI CCWGG 4 cut(s) 15, 473, 501, 621
BseDI CCNNGG 2 cut(s) 499, 1353
BseGI GGATG 8 cut(s) 405, 441, 468, 504, 527, 639, 1156, 1189
BseLI CCNNNNNNNGG 4 cut(s) 401, 583, 584, 1370
BseMI GCAATG 2 cut(s) 15, 945
BseMII CTCAG 6 cut(s) 161, 179, 410, 851, 1007, 1137
BseNI ACTGG 5 cut(s) 206, 739, 1092, 1110, 1259
BseRI GAGGAG 2 cut(s) 969, 1212
BseXI GCAGC 4 cut(s) 227, 916, 1259, 1273
BsgI GTGCAG 1 cut(s) 1404
BshFI GGCC 3 cut(s) 313, 334, 713
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 1212
BsiSI CCGG 7 cut(s) 126, 191, 310, 410, 509, 548, 710
BslFI GGGAC 1 cut(s) 1333
BslI CCNNNNNNNGG 4 cut(s) 401, 583, 584, 1370
BsmAI GTCTC 5 cut(s) 407, 456, 483, 519, 1109
BsmFI GGGAC 1 cut(s) 1333
BsnI GGCC 3 cut(s) 313, 334, 713
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 1212
Bsp143I GATC 4 cut(s) 616, 820, 1129, 1337
Bsp19I CCATGG 1 cut(s) 1353
BspACI CCGC 2 cut(s) 50, 1086
BspANI GGCC 3 cut(s) 313, 334, 713
BspCNI CTCAG 6 cut(s) 162, 178, 409, 850, 1006, 1138
BspLI GGNNCC 6 cut(s) 157, 618, 822, 978, 1131, 1339
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 4 cut(s) 291, 370, 1246, 1426
BspPI GGATC 8 cut(s) 611, 624, 815, 828, 1124, 1137, 1332, 1345
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 15, 945
BsrFI RCCGGY 2 cut(s) 125, 709
BsrI ACTGG 5 cut(s) 206, 739, 1092, 1110, 1259
BssAI RCCGGY 2 cut(s) 125, 709
BssECI CCNNGG 2 cut(s) 499, 1353
BssMI GATC 4 cut(s) 616, 820, 1129, 1337
BssT1I CCWWGG 1 cut(s) 1353
Bst2UI CCWGG 4 cut(s) 15, 473, 501, 621
Bst4CI ACNGT 6 cut(s) 811, 967, 1000, 1120, 1324, 1385
Bst6I CTCTTC 2 cut(s) 459, 1275
BstAPI GCANNNNNTGC 1 cut(s) 1238
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 6, 127
BstDSI CCRYGG 1 cut(s) 1353
BstF5I GGATG 8 cut(s) 405, 441, 468, 504, 527, 639, 1156, 1189
BstHHI GCGC 1 cut(s) 1291
BstKTI GATC 4 cut(s) 619, 823, 1132, 1340
BstMAI GTCTC 5 cut(s) 407, 456, 483, 519, 1109
BstMBI GATC 4 cut(s) 616, 820, 1129, 1337
BstMWI GCNNNNNNNGC 7 cut(s) 10, 319, 929, 935, 1085, 1238, 1247
BstNI CCWGG 4 cut(s) 15, 473, 501, 621
BstSCI CCNGG 8 cut(s) 13, 190, 308, 408, 471, 499, 507, 619
BstSFI CTRYAG 2 cut(s) 213, 1332
BstV1I GCAGC 4 cut(s) 227, 916, 1259, 1273
BstX2I RGATCY 4 cut(s) 616, 820, 1129, 1337
BstYI RGATCY 4 cut(s) 616, 820, 1129, 1337
Bsu36I CCTNAGG 2 cut(s) 837, 1146
BsuI GTATCC 1 cut(s) 997
BsuRI GGCC 3 cut(s) 313, 334, 713
BtgI CCRYGG 1 cut(s) 1353
BtsCI GGATG 8 cut(s) 405, 441, 468, 504, 527, 639, 1156, 1189
BtsI GCAGTG 2 cut(s) 210, 865
BtsIMutI CAGTG 3 cut(s) 210, 404, 865
BveI ACCTGC 4 cut(s) 291, 370, 1246, 1426
Cac8I GCNNGC 2 cut(s) 6, 127
CaiI CAGNNNCTG 3 cut(s) 20, 212, 1238
CfoI GCGC 1 cut(s) 1291
Cfr10I RCCGGY 2 cut(s) 125, 709
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 54, 794
CviAII CATG 4 cut(s) 644, 889, 1070, 1354
CviQI GTAC 2 cut(s) 54, 794
DpnI GATC 4 cut(s) 618, 822, 1131, 1339
DpnII GATC 4 cut(s) 616, 820, 1129, 1337
EaeI YGGCCR 2 cut(s) 311, 711
Eam1104I CTCTTC 2 cut(s) 459, 1275
EarI CTCTTC 2 cut(s) 459, 1275
Ecl136II GAGCTC 1 cut(s) 1210
Eco130I CCWWGG 1 cut(s) 1353
Eco24I GRGCYC 1 cut(s) 1212
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 1210
Eco57I CTGAAG 2 cut(s) 945, 1332
Eco81I CCTNAGG 2 cut(s) 837, 1146
EcoICRI GAGCTC 1 cut(s) 1210
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 4 cut(s) 13, 471, 499, 619
EcoT14I CCWWGG 1 cut(s) 1353
EcoT38I GRGCYC 1 cut(s) 1212
ErhI CCWWGG 1 cut(s) 1353
FaeI CATG 4 cut(s) 647, 892, 1073, 1357
FalI AAGNNNNNCTT 4 cut(s) 415, 447, 478, 510
FaqI GGGAC 1 cut(s) 1333
FatI CATG 4 cut(s) 643, 888, 1069, 1353
FauI CCCGC 2 cut(s) 43, 1093
Fnu4HI GCNGC 4 cut(s) 216, 930, 1248, 1287
FokI GGATG 8 cut(s) 392, 428, 455, 491, 514, 626, 1163, 1196
FriOI GRGCYC 1 cut(s) 1212
Fsp4HI GCNGC 4 cut(s) 216, 930, 1248, 1287
GlaI GCGC 1 cut(s) 1290
GluI GCNGC 4 cut(s) 216, 930, 1248, 1287
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 3 cut(s) 313, 334, 713
HapII CCGG 7 cut(s) 126, 191, 310, 410, 509, 548, 710
HhaI GCGC 1 cut(s) 1291
Hin1II CATG 4 cut(s) 647, 892, 1073, 1357
Hin6I GCGC 1 cut(s) 1289
HinP1I GCGC 1 cut(s) 1289
HincII GTYRAC 3 cut(s) 280, 1264, 1381
HindII GTYRAC 3 cut(s) 280, 1264, 1381
HinfI GANTC 8 cut(s) 415, 449, 476, 512, 755, 767, 1015, 1300
HpaII CCGG 7 cut(s) 126, 191, 310, 410, 509, 548, 710
HphI GGTGA 5 cut(s) 80, 358, 800, 1370, 1407
Hpy166II GTNNAC 6 cut(s) 201, 280, 1048, 1264, 1361, 1381
Hpy188I TCNGA 8 cut(s) 138, 319, 661, 778, 853, 996, 1162, 1272
Hpy188III TCNNGA 4 cut(s) 371, 872, 1181, 1205
Hpy8I GTNNAC 6 cut(s) 201, 280, 1048, 1264, 1361, 1381
Hpy99I CGWCG 1 cut(s) 881
HpyAV CCTTC 4 cut(s) 104, 146, 1356, 1377
HpyCH4III ACNGT 6 cut(s) 811, 967, 1000, 1120, 1324, 1385
HpyCH4IV ACGT 2 cut(s) 879, 1050
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 319, 929, 935, 1085, 1238, 1247
HpySE526I ACGT 2 cut(s) 879, 1050
Hsp92II CATG 4 cut(s) 647, 892, 1073, 1357
HspAI GCGC 1 cut(s) 1289
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 4 cut(s) 616, 820, 1129, 1337
LmnI GCTCC 2 cut(s) 937, 982
Lsp1109I GCAGC 4 cut(s) 227, 916, 1259, 1273
LweI GCATC 8 cut(s) 112, 414, 450, 477, 513, 562, 1337, 1396
MaeII ACGT 2 cut(s) 879, 1050
MaeIII GTNAC 3 cut(s) 208, 326, 595
MalI GATC 4 cut(s) 618, 822, 1131, 1339
MboI GATC 4 cut(s) 616, 820, 1129, 1337
MboII GAAGA 8 cut(s) 43, 83, 125, 179, 446, 536, 1289, 1292
MfeI CAATTG 2 cut(s) 783, 1019
MflI RGATCY 4 cut(s) 616, 820, 1129, 1337
MhlI GDGCHC 1 cut(s) 1212
MluCI AATT 9 cut(s) 366, 378, 556, 783, 828, 892, 984, 1019, 1137
MlyI GAGTC 6 cut(s) 409, 458, 485, 521, 1024, 1309
MmeI TCCRAC 1 cut(s) 675
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 4 cut(s) 144, 240, 1059, 1254
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 2 cut(s) 169, 275
MspI CCGG 7 cut(s) 126, 191, 310, 410, 509, 548, 710
MspR9I CCNGG 8 cut(s) 15, 192, 310, 410, 473, 501, 509, 621
MunI CAATTG 2 cut(s) 783, 1019
MvaI CCWGG 4 cut(s) 15, 473, 501, 621
MwoI GCNNNNNNNGC 7 cut(s) 10, 319, 929, 935, 1085, 1238, 1247
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 4 cut(s) 192, 310, 410, 509
NcoI CCATGG 1 cut(s) 1353
NdeII GATC 4 cut(s) 616, 820, 1129, 1337
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 4 cut(s) 647, 892, 1073, 1357
NlaIV GGNNCC 6 cut(s) 157, 618, 822, 978, 1131, 1339
NmeAIII GCCGAG 1 cut(s) 1323
NmuCI GTSAC 2 cut(s) 208, 595
NspV TTCGAA 1 cut(s) 29
PaqCI CACCTGC 1 cut(s) 1426
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 755, 767
PflFI GACNNNGTC 1 cut(s) 655
PfoI TCCNGGA 5 cut(s) 190, 408, 471, 507, 619
PkrI GCNGC 4 cut(s) 217, 931, 1249, 1288
PleI GAGTC 6 cut(s) 409, 457, 484, 520, 1023, 1308
PpsI GAGTC 6 cut(s) 409, 457, 484, 520, 1023, 1308
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 1212
Psp1406I AACGTT 1 cut(s) 1050
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 4 cut(s) 13, 471, 499, 619
PspGI CCWGG 4 cut(s) 13, 471, 499, 619
PspN4I GGNNCC 6 cut(s) 157, 618, 822, 978, 1131, 1339
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 1 cut(s) 217
PstNI CAGNNNCTG 3 cut(s) 20, 212, 1238
PsuI RGATCY 4 cut(s) 616, 820, 1129, 1337
PsyI GACNNNGTC 1 cut(s) 655
PvuII CAGCTG 2 cut(s) 169, 275
RsaI GTAC 2 cut(s) 55, 795
RsaNI GTAC 2 cut(s) 54, 794
RseI CAYNNNNRTG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 1212
SaqAI TTAA 4 cut(s) 144, 240, 1059, 1254
SatI GCNGC 4 cut(s) 216, 930, 1248, 1287
Sau3AI GATC 4 cut(s) 616, 820, 1129, 1337
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 6 cut(s) 409, 458, 485, 521, 1024, 1309
ScrFI CCNGG 8 cut(s) 15, 192, 310, 410, 473, 501, 509, 621
SduI GDGCHC 1 cut(s) 1212
SfaNI GCATC 8 cut(s) 112, 414, 450, 477, 513, 562, 1337, 1396
SfcI CTRYAG 2 cut(s) 213, 1332
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 1205
SmoI CTYRAG 1 cut(s) 1205
Sse9I AATT 9 cut(s) 366, 378, 556, 783, 828, 892, 984, 1019, 1137
SsiI CCGC 2 cut(s) 50, 1086
SstI GAGCTC 1 cut(s) 1212
StyD4I CCNGG 8 cut(s) 13, 190, 308, 408, 471, 499, 507, 619
StyI CCWWGG 1 cut(s) 1353
TaaI ACNGT 6 cut(s) 811, 967, 1000, 1120, 1324, 1385
TaiI ACGT 2 cut(s) 882, 1053
TaqI TCGA 3 cut(s) 29, 88, 1141
TasI AATT 9 cut(s) 366, 378, 556, 783, 828, 892, 984, 1019, 1137
TfiI GAWTC 2 cut(s) 755, 767
Tru1I TTAA 4 cut(s) 144, 240, 1059, 1254
Tru9I TTAA 4 cut(s) 144, 240, 1059, 1254
TscAI CASTG 3 cut(s) 217, 404, 865
TseFI GTSAC 2 cut(s) 208, 595
TseI GCWGC 4 cut(s) 215, 929, 1247, 1286
Tsp45I GTSAC 2 cut(s) 208, 595
TspDTI ATGAA 4 cut(s) 90, 105, 684, 905
TspRI CASTG 3 cut(s) 217, 404, 865
Tth111I GACNNNGTC 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 4 cut(s) 378, 892, 984, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.