Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8281085.1

Orthogroup ID

OG0001372

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 751

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8281085.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 751 bp

acaggaaaaagtgttggaggaagttgaaccggccacaacaataacagagccaactggtgtagaggacaataaagaatcaaagacagaatcatcatctgaaccaattggtgaggtactaagcatagacacagtatgtaaggatcctccaattcaacctcaggctgtgggttctgaaagcagtgcattggttcaggacgacgtaaagagcatgaattttgaactcaaccatattcctgtatttgctgaagctgctcctgcaatggctaccatacaaagcgttgaaactgtatgcaaggctcctcaaattcaacctcagactgtggatactgaaaagagtcaattggttgatgatgaggtaaagagtgtgaacgttgaacttaatcaaactcatgtatttgctgaacccgcaaccagttctgtcatactgggagttgagactgtatgtaaggatcctcaaattcgacctgaggatgtgggttctgaaaagagtgcattggttcaggatgtggtaaagagcctacatcttgagctcaaccaaactcctctggttgcagaacctgcatttgcagccattaaaccagttgacaatctgatggaagaagaggctgcgccaaagccgagtcaggtgttagggggagggactgttgcatctgtaggatccattccttcagccatgggtgaacctccttctggtgctgttgacagtatggaatgtgatattgcagatgccatttcacctgcacaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

26.16

Weight (kDa)

4.13

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21895 AT4G21895
fragaria_vesca	FvH4_3g02310
malus_domestica	MD05G1343900.v1.1 MD10G1319800.v1.1
prunus_persica	Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1 Prupe.4G022600_v2.0.a1
pyrus_communis	pycom05g31330 pycom10g27070
rosa_chinensis	RchiOBHm_Chr5g0003491 RchiOBHm_Chr5g0003501
rosa_laevigata	RLG00000031140 RLG00000031141 RLG00000031148
rosa_multiflora	Rmu_co8281085.1_g000001 Rmu_co8337087.1_g000001 Rmu_sc0004279.1_g000020 Rmu_sc0004279.1_g000028 Rmu_sc0004279.1_g000029 Rmu_sc0004279.1_g000030 Rmu_sc0009787.1_g000005 Rmu_sc0009787.1_g000012 Rmu_sc0009787.1_g000013 Rmu_sc0009787.1_g000014
rosa_roxburghii	Rroxscaffold_1G00072550
rosa_rugosa	Rorug04G0403700.1 Rorug04G0403800
rosa_samantha	Rh5AG030100 Rh5AG030300 Rh5AG030400 Rh5AG030900 Rh5BG029700 Rh5BG029800 Rh5BG030000 Rh5CG032400 Rh5CG032500 Rh5CG032600 Rh5CG032800 Rh5CG033100 Rh5CG033400 Rh5DG030100 Rh5DG030200 Rh5DG030600
rosa_wichuraiana	Rw5G002830 Rw5G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	746
Acc36I	ACCTGC	2 cut(s)	566, 746
AciI	CCGC	1 cut(s)	406
AclI	AACGTT	1 cut(s)	370
AclWI	GGATC	6 cut(s)	135, 148, 444, 457, 652, 665
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	3 cut(s)	212, 304, 457
AcuI	CTGAAG	2 cut(s)	265, 652
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	690
AgsI	TTSAA	6 cut(s)	27, 153, 219, 282, 309, 375
AluBI	AGCT	2 cut(s)	249, 530
AluI	AGCT	2 cut(s)	249, 530
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	6 cut(s)	135, 148, 444, 457, 652, 665
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	249, 567, 606
ApoI	RAATTY	3 cut(s)	212, 304, 457
AspLEI	GCGC	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	120, 690, 727
AxyI	CCTNAGG	2 cut(s)	157, 466
BamHI	GGATCC	3 cut(s)	140, 449, 657
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	236, 579, 593
BccI	CCATC	1 cut(s)	587
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	652
BfuAI	ACCTGC	2 cut(s)	566, 746
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	250, 568, 607
BlsI	GCNGC	3 cut(s)	251, 569, 608
BmiI	GGNNCC	4 cut(s)	142, 298, 451, 659
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	657, 716
BmuI	ACTGGG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	690
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	4 cut(s)	59, 412, 430, 579
Bse21I	CCTNAGG	2 cut(s)	157, 466
Bse3DI	GCAATG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	2 cut(s)	476, 509
BseLI	CCNNNNNNNGG	1 cut(s)	690
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	171, 327, 457
BseNI	ACTGG	4 cut(s)	59, 412, 430, 579
BseRI	GAGGAG	2 cut(s)	289, 532
BseXI	GCAGC	3 cut(s)	236, 579, 593
BsgI	GTGCAG	1 cut(s)	724
BshFI	GGCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	690
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	140, 449, 657
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	1 cut(s)	406
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	3 cut(s)	170, 326, 458
BspLI	GGNNCC	4 cut(s)	142, 298, 451, 659
BspMI	ACCTGC	2 cut(s)	566, 746
BspPI	GGATC	6 cut(s)	135, 148, 444, 457, 652, 665
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	4 cut(s)	59, 412, 430, 579
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	3 cut(s)	140, 449, 657
BssT1I	CCWWGG	1 cut(s)	673
Bst4CI	ACNGT	6 cut(s)	131, 287, 320, 440, 644, 705
Bst6I	CTCTTC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstDEI	CTNAG	5 cut(s)	117, 157, 313, 466, 748
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	2 cut(s)	476, 509
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	3 cut(s)	143, 452, 660
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	140, 449, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	249, 255, 405, 558, 567
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	3 cut(s)	236, 579, 593
BstX2I	RGATCY	3 cut(s)	140, 449, 657
BstYI	RGATCY	3 cut(s)	140, 449, 657
Bsu36I	CCTNAGG	2 cut(s)	157, 466
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	476, 509
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	2 cut(s)	566, 746
CaiI	CAGNNNCTG	1 cut(s)	558
CfoI	GCGC	1 cut(s)	611
Cfr10I	RCCGGY	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	209, 390, 674
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	5 cut(s)	117, 157, 313, 466, 748
DpnI	GATC	3 cut(s)	142, 451, 659
DpnII	GATC	3 cut(s)	140, 449, 657
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	532
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	265, 652
Eco81I	CCTNAGG	2 cut(s)	157, 466
EcoICRI	GAGCTC	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	3 cut(s)	212, 393, 677
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	3 cut(s)	208, 389, 673
FauI	CCCGC	1 cut(s)	413
Fnu4HI	GCNGC	3 cut(s)	250, 568, 607
FokI	GGATG	2 cut(s)	483, 516
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	3 cut(s)	250, 568, 607
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	3 cut(s)	250, 568, 607
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	3 cut(s)	212, 393, 677
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	2 cut(s)	584, 701
HindII	GTYRAC	2 cut(s)	584, 701
HinfI	GANTC	4 cut(s)	75, 87, 335, 620
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	3 cut(s)	120, 690, 727
Hpy166II	GTNNAC	4 cut(s)	368, 584, 681, 701
Hpy188I	TCNGA	5 cut(s)	98, 173, 316, 482, 592
Hpy188III	TCNNGA	3 cut(s)	192, 501, 525
Hpy8I	GTNNAC	4 cut(s)	368, 584, 681, 701
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	676, 697
HpyCH4III	ACNGT	6 cut(s)	131, 287, 320, 440, 644, 705
HpyCH4IV	ACGT	2 cut(s)	199, 370
HpyF10VI	GCNNNNNNNGC	5 cut(s)	249, 255, 405, 558, 567
HpyF3I	CTNAG	5 cut(s)	117, 157, 313, 466, 748
HpySE526I	ACGT	2 cut(s)	199, 370
Hsp92II	CATG	3 cut(s)	212, 393, 677
HspAI	GCGC	1 cut(s)	609
Kzo9I	GATC	3 cut(s)	140, 449, 657
LmnI	GCTCC	2 cut(s)	257, 302
Lsp1109I	GCAGC	3 cut(s)	236, 579, 593
LweI	GCATC	2 cut(s)	657, 716
MaeII	ACGT	2 cut(s)	199, 370
MalI	GATC	3 cut(s)	142, 451, 659
MboI	GATC	3 cut(s)	140, 449, 657
MboII	GAAGA	2 cut(s)	609, 612
MfeI	CAATTG	2 cut(s)	103, 339
MflI	RGATCY	3 cut(s)	140, 449, 657
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	6 cut(s)	103, 148, 212, 304, 339, 457
MlyI	GAGTC	2 cut(s)	344, 629
MseI	TTAA	2 cut(s)	379, 574
MspI	CCGG	1 cut(s)	30
MunI	CAATTG	2 cut(s)	103, 339
MwoI	GCNNNNNNNGC	5 cut(s)	249, 255, 405, 558, 567
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	3 cut(s)	140, 449, 657
NlaIII	CATG	3 cut(s)	212, 393, 677
NlaIV	GGNNCC	4 cut(s)	142, 298, 451, 659
NmeAIII	GCCGAG	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	75, 87
PkrI	GCNGC	3 cut(s)	251, 569, 608
PleI	GAGTC	2 cut(s)	343, 628
PpsI	GAGTC	2 cut(s)	343, 628
Psp124BI	GAGCTC	1 cut(s)	532
Psp1406I	AACGTT	1 cut(s)	370
PspN4I	GGNNCC	4 cut(s)	142, 298, 451, 659
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	3 cut(s)	140, 449, 657
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	379, 574
SatI	GCNGC	3 cut(s)	250, 568, 607
Sau3AI	GATC	3 cut(s)	140, 449, 657
SchI	GAGTC	2 cut(s)	344, 629
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	657, 716
SfcI	CTRYAG	1 cut(s)	652
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	6 cut(s)	103, 148, 212, 304, 339, 457
SsiI	CCGC	1 cut(s)	406
SstI	GAGCTC	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	6 cut(s)	131, 287, 320, 440, 644, 705
TaiI	ACGT	2 cut(s)	202, 373
TaqI	TCGA	1 cut(s)	461
TasI	AATT	6 cut(s)	103, 148, 212, 304, 339, 457
TfiI	GAWTC	2 cut(s)	75, 87
Tru1I	TTAA	2 cut(s)	379, 574
Tru9I	TTAA	2 cut(s)	379, 574
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	3 cut(s)	249, 567, 606
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	185
XapI	RAATTY	3 cut(s)	212, 304, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.