AT5G12890

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001515
Physical Location & Seq
Reverse (-)
4069417 .. 4071249
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12890.1

Sequence Viewer

Length: 1467 bp
ATGGCGGAAGCTAAACCCAGAAATCTGAGAATCGTGATGTTCCCTTTCATGGGACAAGGCCATATCATCCCGTTTGTAGCTTTAGCCCTTCGTTTAGAGAAGATTATGATTATGAACAGAGCCAACAAAACCACCATCTCTATGATCAATACTCCTTCGAACATCCCCAAAATACGCTCCAATCTTCCACCTGAATCCTCCATAAGTCTCATAGAGTTACCTTTCAACAGCTCTGATCATGGCCTTCCTCACGACGGCGAGAATTTCGATTCTCTTCCTTACTCTCTCGTCATCAGCCTTCTTGAAGCTTCTAGGTCGCTTCGTGAGCCCTTTCGAGACTTCATGACGAAGATCTTGAAGGAAGAAGGGCAGAGCTCGGTTATAGTGATCGGTGATTTCTTCTTGGGTTGGATCGGTAAGGTTTGCAAAGAGGTTGGTGTTTATTCAGTGATCTTTAGTGCTTCTGGTGCTTTTGGTTTAGGTTGTTATAGATCCATATGGTTAAACTTGCCACATAAAGAAACCAAACAAGATCAGTTTCTCTTAGATGATTTCCCTGAAGCAGGGGAGATTGAGAAAACTCAGTTGAATTCTTTCATGTTAGAAGCTGATGGAACCGATGATTGGTCTGTTTTCATGAAGAAGATTATACCTGGATGGTCTGACTTCGATGGATTCTTGTTCAACACGGTTGCTGAAATCGATCAGATGGGATTATCCTACTTCCGTAGAATAACCGGTGTTCCGGTTTGGCCAGTTGGGCCGGTTTTGAAGTCTCCGGATAAGAAGGTGGGATCGAGGTCGACAGAGGAAGCAGTGAAGTCATGGCTTGACTCAAAACCGGACCATTCGGTTGTGTACGTATGTTTCGGTTCAATGAACTCGATTTTGCAAACGCATATGTTAGAATTGGCTATGGCATTAGAGAGTAGCGAGAAGAACTTCATATGGGTGGTGAGGCCGCCCATAGGTGTGGAGGTGAAGAGTGAGTTTGATGTGAAAGGGTATCTACCGGAAGGATTTGAGGAAAGAATAACAAGATCGGAAAGAGGGTTACTTGTGAAGAAATGGGCACCACAAGTTGATATATTGTCACACAAGGCAACATGTGTGTTTTTGAGTCATTGCGGATGGAACTCGATACTCGAATCACTTAGCCACGGTGTGCCACTGCTCGGATGGCCCATGGCAGCCGAGCAGTTCTTCAATTCCATATTGATGGAGAAACATATTGGGGTATCGGTTGAGGTGGCGCGTGGGAAGAGATGTGAGATCAAATGTGATGACATTGTTTCTAAGATCAAACTGGTGATGGAGGAGACTGAAGTAGGGAAAGAGATTAGGAAGAAGGCTAGAGAGGTGAAGGAGTTAGTGAGGAGAGCAATGGTAGATGGAGTTAAAGGTTCCTCCGTCATTGGTTTGGAAGAGTTTCTTGACCAAGCAATGGTCAAGAAAGTGGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

488

Amino Acids

54.87

Weight (kDa)

6.02

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 273 - 441 6e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1072
AccB7I CCANNNNNTGG 1 cut(s) 1444
AccI GTMKAC 1 cut(s) 803
AccII CGCG 1 cut(s) 1255
AccIII TCCGGA 1 cut(s) 778
AciI CCGC 3 cut(s) 5, 962, 1128
AclWI GGATC 3 cut(s) 419, 486, 802
AcoI YGGCCR 1 cut(s) 752
AcsI RAATTY 2 cut(s) 262, 589
AcuI CTGAAG 2 cut(s) 579, 1344
AdeI CACNNNGTG 1 cut(s) 1165
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 8 cut(s) 49, 50, 254, 563, 624, 968, 1175, 1444
AflIII ACRYGT 1 cut(s) 1106
AgeI ACCGGT 1 cut(s) 737
AgsI TTSAA 8 cut(s) 226, 305, 358, 589, 685, 772, 876, 1207
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AluBI AGCT 6 cut(s) 11, 80, 231, 308, 375, 608
AluI AGCT 6 cut(s) 11, 80, 231, 308, 375, 608
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 4 cut(s) 212, 330, 780, 1313
AlwI GGATC 3 cut(s) 419, 486, 802
Aor13HI TCCGGA 1 cut(s) 778
AoxI GGCC 6 cut(s) 58, 241, 752, 761, 959, 1181
ApeKI GCWGC 1 cut(s) 1190
ApoI RAATTY 2 cut(s) 262, 589
AsiGI ACCGGT 1 cut(s) 737
Asp700I GAANNNNTTC 3 cut(s) 593, 941, 1428
AspLEI GCGC 1 cut(s) 1255
AspS9I GGNCC 3 cut(s) 761, 844, 1182
AsuHPI GGTGA 5 cut(s) 404, 967, 991, 1321, 1372
AsuII TTCGAA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 844
BaeGI GKGCMC 1 cut(s) 1075
BalI TGGCCA 1 cut(s) 754
BanI GGYRCC 1 cut(s) 1072
BanII GRGCYC 2 cut(s) 330, 377
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 1202
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 654
BclI TGATCA 2 cut(s) 144, 235
BcoDI GTCTC 4 cut(s) 212, 330, 780, 1313
BfaI CTAG 2 cut(s) 312, 1353
BglI GCCNNNNNGGC 1 cut(s) 760
BglII AGATCT 1 cut(s) 351
BisI GCNGC 2 cut(s) 962, 1191
BlsI GCNGC 2 cut(s) 963, 1192
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 844
BmgT120I GGNCC 3 cut(s) 761, 844, 1182
BmiI GGNNCC 3 cut(s) 616, 1074, 1405
BmrFI CCNGG 1 cut(s) 654
Bpu14I TTCGAA 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 702
BsaAI YACGTR 1 cut(s) 862
BsaJI CCNNGG 2 cut(s) 1159, 1185
BsaWI WCCGGW 5 cut(s) 737, 745, 778, 841, 1012
Bsc4I CCNNNNNNNGG 8 cut(s) 49, 50, 254, 563, 624, 968, 1175, 1444
Bse118I RCCGGY 2 cut(s) 737, 763
Bse1I ACTGG 2 cut(s) 755, 1311
Bse3DI GCAATG 3 cut(s) 1123, 1389, 1449
BseAI TCCGGA 1 cut(s) 778
BseBI CCWGG 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 1159, 1185
BseGI GGATG 5 cut(s) 66, 162, 662, 1136, 1184
BseLI CCNNNNNNNGG 8 cut(s) 49, 50, 254, 563, 624, 968, 1175, 1444
BseMI GCAATG 3 cut(s) 1123, 1389, 1449
BseMII CTCAG 2 cut(s) 17, 596
BseNI ACTGG 2 cut(s) 755, 1311
BseRI GAGGAG 2 cut(s) 1331, 1390
BseSI GKGCMC 1 cut(s) 1075
BseXI GCAGC 1 cut(s) 1202
Bsh1236I CGCG 1 cut(s) 1255
BshFI GGCC 6 cut(s) 60, 243, 754, 763, 961, 1183
BshNI GGYRCC 1 cut(s) 1072
BshTI ACCGGT 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 6 cut(s) 738, 746, 764, 779, 842, 1013
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 8 cut(s) 49, 50, 254, 563, 624, 968, 1175, 1444
BsmAI GTCTC 4 cut(s) 212, 330, 780, 1313
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 6 cut(s) 60, 243, 754, 763, 961, 1183
Bsp119I TTCGAA 1 cut(s) 158
Bsp1286I GDGCHC 3 cut(s) 330, 377, 1075
Bsp13I TCCGGA 1 cut(s) 778
Bsp19I CCATGG 1 cut(s) 1185
BspACI CCGC 3 cut(s) 5, 962, 1128
BspANI GGCC 6 cut(s) 60, 243, 754, 763, 961, 1183
BspCNI CTCAG 2 cut(s) 18, 595
BspDI ATCGAT 1 cut(s) 702
BspEI TCCGGA 1 cut(s) 778
BspFNI CGCG 1 cut(s) 1255
BspHI TCATGA 2 cut(s) 342, 636
BspLI GGNNCC 3 cut(s) 616, 1074, 1405
BspPI GGATC 3 cut(s) 419, 486, 802
BspT104I TTCGAA 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 1072
BsrDI GCAATG 3 cut(s) 1123, 1389, 1449
BsrFI RCCGGY 2 cut(s) 737, 763
BsrI ACTGG 2 cut(s) 755, 1311
BssAI RCCGGY 2 cut(s) 737, 763
BssECI CCNNGG 2 cut(s) 1159, 1185
BssT1I CCWWGG 1 cut(s) 1185
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 691, 1163
Bst6I CTCTTC 4 cut(s) 279, 977, 1256, 1419
BstBAI YACGTR 1 cut(s) 862
BstBI TTCGAA 1 cut(s) 158
BstDEI CTNAG 5 cut(s) 26, 544, 582, 1154, 1296
BstDSI CCRYGG 2 cut(s) 1159, 1185
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 5 cut(s) 66, 162, 662, 1136, 1184
BstFNI CGCG 1 cut(s) 1255
BstHHI GCGC 1 cut(s) 1255
BstMAI GTCTC 4 cut(s) 212, 330, 780, 1313
BstMWI GCNNNNNNNGC 4 cut(s) 325, 467, 760, 1180
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 1 cut(s) 1110
BstSCI CCNGG 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 1075
BstSNI TACGTA 1 cut(s) 862
BstUI CGCG 1 cut(s) 1255
BstV1I GCAGC 1 cut(s) 1202
BstX2I RGATCY 2 cut(s) 351, 491
BstXI CCANNNNNNTGG 2 cut(s) 973, 1219
BstYI RGATCY 2 cut(s) 351, 491
Bsu15I ATCGAT 1 cut(s) 702
BsuRI GGCC 6 cut(s) 60, 243, 754, 763, 961, 1183
BsuTUI ATCGAT 1 cut(s) 702
BtgI CCRYGG 2 cut(s) 1159, 1185
BtsCI GGATG 5 cut(s) 66, 162, 662, 1136, 1184
BtsI GCAGTG 2 cut(s) 822, 1169
BtsIMutI CAGTG 3 cut(s) 453, 822, 1169
CciI TCATGA 2 cut(s) 342, 636
CfoI GCGC 1 cut(s) 1255
Cfr10I RCCGGY 2 cut(s) 737, 763
Cfr13I GGNCC 3 cut(s) 761, 844, 1182
ClaI ATCGAT 1 cut(s) 702
Csp6I GTAC 1 cut(s) 859
CspAI ACCGGT 1 cut(s) 737
CviAII CATG 8 cut(s) 49, 239, 343, 598, 637, 825, 1107, 1186
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 5 cut(s) 26, 544, 582, 1154, 1296
DraIII CACNNNGTG 1 cut(s) 1165
EaeI YGGCCR 1 cut(s) 752
Eam1104I CTCTTC 4 cut(s) 279, 977, 1256, 1419
EarI CTCTTC 4 cut(s) 279, 977, 1256, 1419
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 375
Eco105I TACGTA 1 cut(s) 862
Eco130I CCWWGG 1 cut(s) 1185
Eco24I GRGCYC 2 cut(s) 330, 377
Eco47I GGWCC 1 cut(s) 844
Eco53kI GAGCTC 1 cut(s) 375
Eco57I CTGAAG 2 cut(s) 579, 1344
EcoICRI GAGCTC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 1185
EcoT38I GRGCYC 2 cut(s) 330, 377
ErhI CCWWGG 1 cut(s) 1185
FaeI CATG 8 cut(s) 52, 242, 346, 601, 640, 828, 1110, 1189
FalI AAGNNNNNCTT 2 cut(s) 1416, 1448
FaqI GGGAC 1 cut(s) 66
FatI CATG 8 cut(s) 48, 238, 342, 597, 636, 824, 1106, 1185
FauNDI CATATG 3 cut(s) 497, 900, 947
FbaI TGATCA 2 cut(s) 144, 235
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 2 cut(s) 962, 1191
FokI GGATG 5 cut(s) 53, 149, 669, 1143, 1191
FriOI GRGCYC 2 cut(s) 330, 377
Fsp4HI GCNGC 2 cut(s) 962, 1191
FspBI CTAG 2 cut(s) 312, 1353
GlaI GCGC 1 cut(s) 1254
GluI GCNGC 2 cut(s) 962, 1191
HaeIII GGCC 6 cut(s) 60, 243, 754, 763, 961, 1183
HapII CCGG 6 cut(s) 738, 746, 764, 779, 842, 1013
HhaI GCGC 1 cut(s) 1255
Hin1II CATG 8 cut(s) 52, 242, 346, 601, 640, 828, 1110, 1189
Hin6I GCGC 1 cut(s) 1253
HinP1I GCGC 1 cut(s) 1253
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 7 cut(s) 30, 194, 269, 675, 833, 1120, 1148
HpaII CCGG 6 cut(s) 738, 746, 764, 779, 842, 1013
HphI GGTGA 5 cut(s) 404, 967, 991, 1321, 1372
Hpy166II GTNNAC 2 cut(s) 804, 859
Hpy188I TCNGA 6 cut(s) 27, 235, 664, 708, 1045, 1178
Hpy8I GTNNAC 2 cut(s) 804, 859
Hpy99I CGWCG 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 691, 1163
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 2 cut(s) 426, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 325, 467, 760, 1180
HpyF3I CTNAG 5 cut(s) 26, 544, 582, 1154, 1296
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 8 cut(s) 52, 242, 346, 601, 640, 828, 1110, 1189
HspAI GCGC 1 cut(s) 1253
Kpn2I TCCGGA 1 cut(s) 778
Ksp22I TGATCA 2 cut(s) 144, 235
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 1202
MaeI CTAG 2 cut(s) 312, 1353
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 3 cut(s) 216, 1053, 1092
MflI RGATCY 2 cut(s) 351, 491
MhlI GDGCHC 3 cut(s) 330, 377, 1075
MlsI TGGCCA 1 cut(s) 754
MluCI AATT 5 cut(s) 262, 589, 908, 1207, 1462
MluNI TGGCCA 1 cut(s) 754
MlyI GAGTC 2 cut(s) 827, 1129
MmeI TCCRAC 1 cut(s) 389
Mox20I TGGCCA 1 cut(s) 754
MroI TCCGGA 1 cut(s) 778
MroXI GAANNNNTTC 3 cut(s) 593, 941, 1428
MscI TGGCCA 1 cut(s) 754
MseI TTAA 2 cut(s) 503, 1398
MslI CAYNNNNRTG 4 cut(s) 140, 950, 971, 1217
Msp20I TGGCCA 1 cut(s) 754
MspI CCGG 6 cut(s) 738, 746, 764, 779, 842, 1013
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 1255
MwoI GCNNNNNNNGC 4 cut(s) 325, 467, 760, 1180
NcoI CCATGG 1 cut(s) 1185
NdeI CATATG 3 cut(s) 497, 900, 947
NlaIII CATG 8 cut(s) 52, 242, 346, 601, 640, 828, 1110, 1189
NlaIV GGNNCC 3 cut(s) 616, 1074, 1405
NmeAIII GCCGAG 1 cut(s) 1219
NmuCI GTSAC 1 cut(s) 1092
NspI RCATGY 1 cut(s) 1110
NspV TTCGAA 1 cut(s) 158
PagI TCATGA 2 cut(s) 342, 636
PciI ACATGT 1 cut(s) 1106
PdmI GAANNNNTTC 3 cut(s) 593, 941, 1428
PfeI GAWTC 5 cut(s) 30, 194, 269, 675, 1148
PflMI CCANNNNNTGG 1 cut(s) 1444
PinAI ACCGGT 1 cut(s) 737
PkrI GCNGC 2 cut(s) 963, 1192
PleI GAGTC 2 cut(s) 827, 1128
PpsI GAGTC 2 cut(s) 827, 1128
Ppu21I YACGTR 1 cut(s) 862
PscI ACATGT 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 616, 1074, 1405
PspPI GGNCC 3 cut(s) 761, 844, 1182
PsuI RGATCY 2 cut(s) 351, 491
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 4 cut(s) 140, 950, 971, 1217
SacI GAGCTC 1 cut(s) 377
SalI GTCGAC 1 cut(s) 802
SaqAI TTAA 2 cut(s) 503, 1398
SatI GCNGC 2 cut(s) 962, 1191
Sau96I GGNCC 3 cut(s) 761, 844, 1182
SchI GAGTC 2 cut(s) 827, 1129
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 3 cut(s) 330, 377, 1075
SfiI GGCCNNNNNGGCC 1 cut(s) 760
SfuI TTCGAA 1 cut(s) 158
SinI GGWCC 1 cut(s) 844
SmiMI CAYNNNNRTG 4 cut(s) 140, 950, 971, 1217
SnaBI TACGTA 1 cut(s) 862
Sse9I AATT 5 cut(s) 262, 589, 908, 1207, 1462
SsiI CCGC 3 cut(s) 5, 962, 1128
SspMI CTAG 2 cut(s) 312, 1353
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 1185
TaaI ACNGT 2 cut(s) 691, 1163
TaiI ACGT 1 cut(s) 864
TasI AATT 5 cut(s) 262, 589, 908, 1207, 1462
TauI GCSGC 1 cut(s) 964
TfiI GAWTC 5 cut(s) 30, 194, 269, 675, 1148
Tru1I TTAA 2 cut(s) 503, 1398
Tru9I TTAA 2 cut(s) 503, 1398
TscAI CASTG 3 cut(s) 453, 822, 1176
TseFI GTSAC 1 cut(s) 1092
TseI GCWGC 1 cut(s) 1190
Tsp45I GTSAC 1 cut(s) 1092
TspDTI ATGAA 8 cut(s) 37, 128, 331, 586, 625, 653, 893, 934
TspGWI ACGGA 2 cut(s) 716, 1399
TspRI CASTG 3 cut(s) 453, 822, 1176
Van91I CCANNNNNTGG 1 cut(s) 1444
VpaK11BI GGWCC 1 cut(s) 844
XagI CCTNNNNNAGG 1 cut(s) 561
XapI RAATTY 2 cut(s) 262, 589
XceI RCATGY 1 cut(s) 1110
XcmI CCANNNNNNNNNTGG 1 cut(s) 1176
XmiI GTMKAC 1 cut(s) 803
XmnI GAANNNNTTC 3 cut(s) 593, 941, 1428
XspI CTAG 2 cut(s) 312, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.