Rmu_ssc0000372.1_g000045

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
OG0001515
Physical Location & Seq
Forward (+)
160337 .. 160966
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000045.1.cds

Sequence Viewer

Length: 630 bp
atgattgttttaggacacaattccttcaaacatctcccacattgtagcgtgtcttcagacgatgaggagttcaacattctagggttcccagaattgtgtcgtttgacaccgtctcacttgcatcagtttctcagagctgccgatggtacagattcttggtcaagattttttcagacgcaaaccttactctcgatgaagtcttttggttggatgtgcaacatcgttgaagaaatcgagctgttcggattgaaagtgttgcgaaattacaacaagctccctgtttggtccattttggcttccaacatttccagtaaaaaatattccagcaagaaatggggaatttcagcagagaaatgcaccgagtggcttgactcgcacagtgccgattcggtggtgtacatctcgtttggttctcagaacacgatcagcgcatcccagatgatggaattggcaaaaggtttggaaaagagcgggaagccttttgtctgggtcacaaggccaccggtggggcacgacatgaagggtgatttccgatcggaatggctgccggagcgttttgtggagcgaataatgttggaatatatttgtaaaattttgattgcttctactttgtatttgaacaaaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

209

Amino Acids

23.96

Weight (kDa)

7.68

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 471
AciI CCGC 1 cut(s) 471
AcsI RAATTY 2 cut(s) 339, 591
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 363
AfaI GTAC 2 cut(s) 148, 398
AfiI CCNNNNNNNGG 2 cut(s) 442, 506
AgeI ACCGGT 1 cut(s) 502
AgsI TTSAA 5 cut(s) 28, 73, 227, 250, 619
AluBI AGCT 3 cut(s) 137, 238, 274
AluI AGCT 3 cut(s) 137, 238, 274
Alw26I GTCTC 1 cut(s) 117
AoxI GGCC 1 cut(s) 497
ApeKI GCWGC 2 cut(s) 137, 544
ApoI RAATTY 2 cut(s) 339, 591
AsiGI ACCGGT 1 cut(s) 502
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 536
AvaII GGWCC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 37, 69
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 124, 531
BccI CCATC 2 cut(s) 137, 436
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 80
BisI GCNGC 2 cut(s) 138, 545
BlsI GCNGC 2 cut(s) 139, 546
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 2 cut(s) 130, 440
BpiI GAAGAC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 506
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 309
BseGI GGATG 2 cut(s) 216, 431
BseLI CCNNNNNNNGG 2 cut(s) 442, 506
BseMII CTCAG 2 cut(s) 145, 428
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 2 cut(s) 124, 531
Bsh1285I CGRYCG 1 cut(s) 536
BshFI GGCC 1 cut(s) 499
BshTI ACCGGT 1 cut(s) 502
BsiEI CGRYCG 1 cut(s) 536
BsiSI CCGG 2 cut(s) 503, 548
BslI CCNNNNNNNGG 2 cut(s) 442, 506
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 513
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 2 cut(s) 423, 533
BspACI CCGC 1 cut(s) 471
BspANI GGCC 1 cut(s) 499
BspCNI CTCAG 2 cut(s) 144, 427
BspLI GGNNCC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 502
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 502
BssMI GATC 2 cut(s) 423, 533
Bst4CI ACNGT 2 cut(s) 111, 380
BstAUI TGTACA 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 131, 414
BstF5I GGATG 2 cut(s) 216, 431
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 2 cut(s) 426, 536
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 423, 533
BstMCI CGRYCG 1 cut(s) 536
BstMWI GCNNNNNNNGC 2 cut(s) 373, 550
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 124, 531
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 499
BtsCI GGATG 2 cut(s) 216, 431
BtsIMutI CAGTG 1 cut(s) 385
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 147, 397
CspAI ACCGGT 1 cut(s) 502
CviAII CATG 1 cut(s) 517
CviJI RGCY 8 cut(s) 137, 238, 274, 296, 367, 478, 499, 544
CviKI_1 RGCY 8 cut(s) 137, 238, 274, 296, 367, 478, 499, 544
CviQI GTAC 2 cut(s) 147, 397
DdeI CTNAG 2 cut(s) 131, 414
DpnI GATC 2 cut(s) 425, 535
DpnII GATC 2 cut(s) 423, 533
DraIII CACNNNGTG 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 1 cut(s) 520
FaiI YATR 3 cut(s) 518, 582, 628
FatI CATG 1 cut(s) 516
FauI CCCGC 1 cut(s) 464
Fnu4HI GCNGC 2 cut(s) 138, 545
FokI GGATG 2 cut(s) 223, 418
Fsp4HI GCNGC 2 cut(s) 138, 545
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 430
GluI GCNGC 2 cut(s) 138, 545
HaeIII GGCC 1 cut(s) 499
HapII CCGG 2 cut(s) 503, 548
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 431
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HinfI GANTC 3 cut(s) 152, 371, 386
HpaII CCGG 2 cut(s) 503, 548
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 7 cut(s) 58, 134, 174, 245, 417, 533, 538
Hpy188III TCNNGA 2 cut(s) 162, 190
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 34, 514
HpyCH4III ACNGT 2 cut(s) 111, 380
HpyCH4V TGCA 3 cut(s) 121, 216, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 550
HpyF3I CTNAG 2 cut(s) 131, 414
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 1 cut(s) 429
Kzo9I GATC 2 cut(s) 423, 533
LmnI GCTCC 3 cut(s) 279, 550, 562
LpnPI CCDG 8 cut(s) 102, 291, 322, 337, 449, 472, 516, 561
Lsp1109I GCAGC 2 cut(s) 124, 531
LweI GCATC 2 cut(s) 130, 440
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 490
MalI GATC 2 cut(s) 425, 535
MbiI CCGCTC 1 cut(s) 471
MboI GATC 2 cut(s) 423, 533
MboII GAAGA 2 cut(s) 45, 239
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 6 cut(s) 19, 92, 262, 339, 446, 591
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 3 cut(s) 188, 324, 555
MnlI CCTC 1 cut(s) 58
MspI CCGG 2 cut(s) 503, 548
MwoI GCNNNNNNNGC 2 cut(s) 373, 550
NdeII GATC 2 cut(s) 423, 533
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 490
PfeI GAWTC 2 cut(s) 152, 386
PflFI GACNNNGTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 442
PinAI ACCGGT 1 cut(s) 502
PkrI GCNGC 2 cut(s) 139, 546
Ple19I CGATCG 1 cut(s) 536
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 285
PsyI GACNNNGTC 1 cut(s) 109
PvuI CGATCG 1 cut(s) 536
RsaI GTAC 2 cut(s) 148, 398
RsaNI GTAC 2 cut(s) 147, 397
SatI GCNGC 2 cut(s) 138, 545
Sau3AI GATC 2 cut(s) 423, 533
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 513
SetI ASST 5 cut(s) 139, 185, 240, 276, 460
SfaNI GCATC 2 cut(s) 130, 440
SgrAI CRCCGGYG 1 cut(s) 502
SinI GGWCC 1 cut(s) 285
Sse9I AATT 6 cut(s) 19, 92, 262, 339, 446, 591
SsiI CCGC 1 cut(s) 471
SspI AATATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 111, 380
TaqI TCGA 2 cut(s) 191, 234
TasI AATT 6 cut(s) 19, 92, 262, 339, 446, 591
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 2 cut(s) 152, 386
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 2 cut(s) 137, 544
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 209, 533
TspRI CASTG 1 cut(s) 385
Tth111I GACNNNGTC 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 2 cut(s) 339, 591
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.