Rh4CG163100

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001515
Physical Location & Seq
Forward (+)
35849097 .. 35849927
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG163100.1

Sequence Viewer

Length: 831 bp
ATGAAGTCTTTTGGTTGCATATGCAACACTATTGAGGAAATCGAGCCGTTCGGATTGGAAGTGTTGCGAAATTACCTTAAGCTTCCTGTTTGGTCTGTCTTGGCTTCCAATATTTCCAGCCAAAAATATTCCGGGAAGAAATCCAGAATTTCGGCTGAGAAATGTATTGAGTGGCTCGACTCGCACGCTTCCGATTCGGTGGTGTATATCTCGTTCGGTTCTCAGAACACGATCAGTGCCTCCCAGATGATAGAATTGGCCAAAGGATTGGAAAAGAGCGGGAAGCCTTTTGTCTGGGTCATAAGGCCGCCGGTGGGTCACGACTTGAAGGGCGAGTTCCGACCGGAGTGGCTGCCGGAGCGTTTCGAGGAGCGAATGAGGGAGACGAAGCAGGGGTTGTTGGTGCACAACTGGGCCTCGCAGCTGGAGATTCTGTCGCACGAGGCGACGCGAGCGTTTGTGAGTCACTGCGGGTGGAACTCGGTGGTAGAGAGCTTGAGCAGAGGGGTGCCGATCATCGGGTGGCCGCTGGCGGCGGAGCAGGCTTATAACTCGAAGATGTTGGTGGAGGAGATGGGTGTGAGTGTGGAGCTGACGAGGGGTGTGAAGAGTAATGTGGAGGCGGAGGAGGTGAGGAGAGTGATTGAGTTGGTGGTGGACGAGAGTGGGGAAGGTGGTGAGATGAGGAGAAGAGCTGGTGAGATTATGGAGAAGATAAGAGGAGCTGTAGGGGAGGAGGGTGAAGCAAAGGGGTCTTCCCTTAAAGCTATAGATGATTTTGTTTCTGAACTTCTTTCACAGAGAGAAGGAAGAGGATCCAAAATTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

276

Amino Acids

30.8

Weight (kDa)

5.6

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 48 - 201 8e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 279
AccII CGCG 1 cut(s) 451
AciI CCGC 7 cut(s) 279, 308, 471, 527, 533, 536, 623
AclWI GGATC 2 cut(s) 810, 823
AcoI YGGCCR 2 cut(s) 258, 524
AcsI RAATTY 2 cut(s) 147, 822
AfiI CCNNNNNNNGG 2 cut(s) 314, 518
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 328
AluBI AGCT 7 cut(s) 82, 424, 495, 592, 695, 725, 767
AluI AGCT 7 cut(s) 82, 424, 495, 592, 695, 725, 767
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 404
AlwI GGATC 2 cut(s) 810, 823
AoxI GGCC 4 cut(s) 258, 305, 414, 524
ApaLI GTGCAC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 352, 421
ApoI RAATTY 2 cut(s) 147, 822
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 4 cut(s) 643, 689, 710, 752
BaeGI GKGCMC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 815
BanI GGYRCC 1 cut(s) 508
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 339, 433
BccI CCATC 1 cut(s) 568
BceAI ACGGC 1 cut(s) 31
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 377
BfmI CTRYAG 2 cut(s) 726, 768
BfrI CTTAAG 1 cut(s) 77
BisI GCNGC 5 cut(s) 308, 353, 422, 527, 534
BlsI GCNGC 5 cut(s) 309, 354, 423, 528, 535
Bme1390I CCNGG 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 2 cut(s) 510, 817
BmrFI CCNGG 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 518
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 416
BseLI CCNNNNNNNGG 2 cut(s) 314, 518
BseMII CTCAG 2 cut(s) 147, 236
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 7 cut(s) 383, 584, 641, 649, 700, 735, 749
BseSI GKGCMC 1 cut(s) 408
BseXI GCAGC 2 cut(s) 339, 433
Bsh1236I CGCG 1 cut(s) 451
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 4 cut(s) 260, 307, 416, 526
BshNI GGYRCC 1 cut(s) 508
BsiEI CGRYCG 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 4 cut(s) 132, 311, 344, 356
BslI CCNNNNNNNGG 2 cut(s) 314, 518
BsmAI GTCTC 1 cut(s) 377
BsmBI CGTCTC 1 cut(s) 377
BsnI GGCC 4 cut(s) 260, 307, 416, 526
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 3 cut(s) 231, 513, 815
BspACI CCGC 7 cut(s) 279, 308, 471, 527, 533, 536, 623
BspANI GGCC 4 cut(s) 260, 307, 416, 526
BspCNI CTCAG 2 cut(s) 148, 235
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 510, 817
BspPI GGATC 2 cut(s) 810, 823
BspQI GCTCTTC 1 cut(s) 685
BspT107I GGYRCC 1 cut(s) 508
BspTI CTTAAG 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 310
BssMI GATC 3 cut(s) 231, 513, 815
BssSI CACGAG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 440
Bst6I CTCTTC 3 cut(s) 602, 685, 805
BstAFI CTTAAG 1 cut(s) 77
BstC8I GCNNGC 4 cut(s) 186, 453, 531, 543
BstDEI CTNAG 2 cut(s) 156, 222
BstFNI CGCG 1 cut(s) 451
BstKTI GATC 3 cut(s) 234, 516, 818
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 3 cut(s) 231, 513, 815
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 4 cut(s) 181, 358, 452, 542
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 2 cut(s) 726, 768
BstSLI GKGCMC 1 cut(s) 408
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 2 cut(s) 339, 433
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 1 cut(s) 815
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 1 cut(s) 815
BsuRI GGCC 4 cut(s) 260, 307, 416, 526
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 2 cut(s) 241, 466
Cac8I GCNNGC 4 cut(s) 186, 453, 531, 543
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 156, 222
DpnI GATC 3 cut(s) 233, 515, 817
DpnII GATC 3 cut(s) 231, 513, 815
EaeI YGGCCR 2 cut(s) 258, 524
Eam1104I CTCTTC 3 cut(s) 602, 685, 805
EarI CTCTTC 3 cut(s) 602, 685, 805
EciI GGCGGA 2 cut(s) 551, 638
Esp3I CGTCTC 1 cut(s) 377
FaiI YATR 7 cut(s) 20, 22, 207, 302, 549, 707, 770
FauI CCCGC 2 cut(s) 272, 464
FauNDI CATATG 1 cut(s) 20
Fnu4HI GCNGC 5 cut(s) 308, 353, 422, 527, 534
Fsp4HI GCNGC 5 cut(s) 308, 353, 422, 527, 534
GluI GCNGC 5 cut(s) 308, 353, 422, 527, 534
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 4 cut(s) 260, 307, 416, 526
HapII CCGG 4 cut(s) 132, 311, 344, 356
HgaI GACGC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 4 cut(s) 179, 194, 430, 463
HpaII CCGG 4 cut(s) 132, 311, 344, 356
HphI GGTGA 4 cut(s) 643, 689, 710, 752
Hpy166II GTNNAC 2 cut(s) 406, 658
Hpy188I TCNGA 5 cut(s) 53, 193, 225, 341, 787
Hpy188III TCNNGA 2 cut(s) 144, 320
Hpy8I GTNNAC 2 cut(s) 406, 658
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 3 cut(s) 322, 665, 800
HpyCH4V TGCA 3 cut(s) 18, 24, 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 358, 452, 542
HpyF3I CTNAG 2 cut(s) 156, 222
Kzo9I GATC 3 cut(s) 231, 513, 815
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 5 cut(s) 358, 370, 538, 589, 722
Lsp1109I GCAGC 2 cut(s) 339, 433
MaeIII GTNAC 2 cut(s) 317, 464
MalI GATC 3 cut(s) 233, 515, 817
MbiI CCGCTC 1 cut(s) 279
MboI GATC 3 cut(s) 231, 513, 815
MboII GAAGA 7 cut(s) 148, 568, 619, 702, 724, 747, 822
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 1 cut(s) 408
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 4 cut(s) 70, 147, 254, 822
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 2 cut(s) 173, 472
MmeI TCCRAC 1 cut(s) 364
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MseI TTAA 2 cut(s) 78, 762
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 2 cut(s) 424, 529
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 4 cut(s) 132, 311, 344, 356
MspR9I CCNGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 4 cut(s) 181, 358, 452, 542
NciI CCSGG 1 cut(s) 133
NdeI CATATG 1 cut(s) 20
NdeII GATC 3 cut(s) 231, 513, 815
NlaIV GGNNCC 2 cut(s) 510, 817
NmuCI GTSAC 2 cut(s) 317, 464
PciSI GCTCTTC 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PfeI GAWTC 2 cut(s) 194, 430
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 5 cut(s) 309, 354, 423, 528, 535
PleI GAGTC 2 cut(s) 173, 471
PpsI GAGTC 2 cut(s) 173, 471
PsiI TTATAA 1 cut(s) 549
PspN4I GGNNCC 2 cut(s) 510, 817
PspPI GGNCC 1 cut(s) 414
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PsuI RGATCY 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 685
SaqAI TTAA 2 cut(s) 78, 762
SatI GCNGC 5 cut(s) 308, 353, 422, 527, 534
Sau3AI GATC 3 cut(s) 231, 513, 815
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 2 cut(s) 173, 472
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 408
SfcI CTRYAG 2 cut(s) 726, 768
SgrAI CRCCGGYG 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 77, 496
SmoI CTYRAG 2 cut(s) 77, 496
Sse9I AATT 4 cut(s) 70, 147, 254, 822
SsiI CCGC 7 cut(s) 279, 308, 471, 527, 533, 536, 623
SspI AATATT 2 cut(s) 112, 128
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 4 cut(s) 42, 177, 366, 554
TasI AATT 4 cut(s) 70, 147, 254, 822
TauI GCSGC 3 cut(s) 310, 529, 536
TfiI GAWTC 2 cut(s) 194, 430
Tru1I TTAA 2 cut(s) 78, 762
Tru9I TTAA 2 cut(s) 78, 762
TscAI CASTG 2 cut(s) 241, 473
TseFI GTSAC 2 cut(s) 317, 464
TseI GCWGC 2 cut(s) 352, 421
Tsp45I GTSAC 2 cut(s) 317, 464
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 241, 473
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 404
XapI RAATTY 2 cut(s) 147, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.