FvH4_4g11780

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001515
Physical Location & Seq
Forward (+)
15516062 .. 15520512
4451 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11780.t3

Sequence Viewer

Length: 1464 bp
ATGGGTTCTGATAAGGAACAACACATAGTGATGCTACCATTCTTGGCTCAAGGCCATCTGATCCCATTCCTAGCCCTTGCCAAGAAAATCCAGCACAGAACAGGCTTCACCATCACCATCGCCACCACGCCACTCAACGCCCAATACCTTCGTTCTGCTCAAACCAACACCAACATCCACTTGTTCGAGCTTCCCTTCCACAGCCAAGACTATGGCCTCCCACCCAACACAGAAAACACAGAGAACCTACCTTTCAATGTCATCGGAGACTTCTTCACTTCATCACAACAACTAGAAGCCCCGACTCGCCGTCTGGTCTCGGACATCACCGCAAAGGAAGGCAAGCCCCCGCTTTGCTTAATCTCCGACTTGTTCTTTGGATGGGCTGTCAATGTTGCGAAAAGCTCCGGAACCGTCAACATCGCTTTCTCCACAGGTGGGGCTTACGGCACGGCGGCGTACATCTCACTCTGGCAACATCTCCCTCATCGTACTGTGTCTTCAGACGACGAGGAGTTCCACCTTCCGGGGTTCCCGGAACGGTGTCGCTTGACGCCGTCTCACTTGCATCAGTTTCTGAGAGCCGCCGACGGTACTGATACTTGGTCGAGGTATTTCCAGCCGCAAATCTCGCTCTCGATGAAGTCTTTTGGTTTGATATGCAACACCGTTGAAGAAATCGAGCCGTTCGGACTGCAAGTGTTGCGAAACTACGTCAAGTTGCCTGTTTGGTCTGTTTTGGCTTCTAATATTTCCAGCAAAAAGTATTCCGGCAAGAAATCCGGAATTTCGGCCGAGAGATGCATTGAGTGGCTGGACTCGCACGCTTCTGATTCCGTGGTGTATATCTCGTTTGGTTCTCAGAACACGATCACTGCCTCCCAGATGATGGAATTGGCCAAGGGATTAGAAATGAGCAAGAAGCCTTTTGTGTGGGTCATAAGGCCGCCGGTGGGTCACGACTTGAAGGGCGAGTTCCGACCAGAGTGGCTGCCGGAGCGTTTCGAAGAACGAATGAATGAAACTAGGCAGGGATTGCTGGTGCACAACTGGGCGCCGCAGCTGGATATACTGGCGCATAAGATGACGCGTGCTTTTGTGAGTCATTGCGGGTGGAACTCGGTGGTGGAGAGCTTGAGCAGAGGGGTGCCGATCATCGGGTGGCCGCTGGCGGCGGAGCAGGCGTATAATTCCAAGATGTTGGTGGAGGAGATGGGTGTGAGTGTGGAGCTGACGAGGGGTGCGAAGAGTAATGTGGTGGCGGAGGAGGTGAGGAGGGTGATTGAGTTGGTGGTGGATGAGAGTGGGGAAGGAGGTGAGATGAGGAGGAGGGCCGGTGAGATTATGGAGAAGATAAGAGGAGCTGCTGGGGAGGATGGTGAAGCAAAAGGGTCTTCCGTTAAAGCTATTGATGATTTTGTTTCTCAACTTCTATCACAAAGAGAAGGATTAAAAATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

488

Amino Acids

54.3

Weight (kDa)

6.23

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 9 - 133 1.9e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 268 - 415 1.2e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1054, 1147
AccB7I CCANNNNNTGG 1 cut(s) 889
AccII CGCG 1 cut(s) 1090
AccIII TCCGGA 2 cut(s) 407, 782
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 3 cut(s) 792, 897, 1163
AcsI RAATTY 1 cut(s) 786
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 2 cut(s) 554, 1055
AdeI CACNNNGTG 1 cut(s) 28
AfaI GTAC 3 cut(s) 461, 493, 595
AfiI CCNNNNNNNGG 5 cut(s) 438, 526, 889, 953, 1157
AflIII ACRYGT 1 cut(s) 1088
AgsI TTSAA 3 cut(s) 256, 674, 967
AhdI GACNNNNNGTC 1 cut(s) 309
AluBI AGCT 7 cut(s) 190, 405, 1063, 1134, 1231, 1364, 1406
AluI AGCT 7 cut(s) 190, 405, 1063, 1134, 1231, 1364, 1406
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 3 cut(s) 261, 322, 564
Alw44I GTGCAC 1 cut(s) 1043
AlwI GGATC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 577
Aor13HI TCCGGA 2 cut(s) 407, 782
AoxI GGCC 7 cut(s) 52, 214, 792, 897, 944, 1163, 1332
ApaLI GTGCAC 1 cut(s) 1043
ApeKI GCWGC 3 cut(s) 991, 1060, 1364
ApoI RAATTY 1 cut(s) 786
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspLEI GCGC 2 cut(s) 1057, 1078
AspS9I GGNCC 1 cut(s) 1332
AsuC2I CCSGG 2 cut(s) 528, 536
AsuHPI GGTGA 8 cut(s) 100, 106, 319, 1282, 1291, 1328, 1349, 1391
AsuII TTCGAA 1 cut(s) 1005
BaeGI GKGCMC 1 cut(s) 1047
BalI TGGCCA 1 cut(s) 899
BanI GGYRCC 2 cut(s) 1054, 1147
BarI GAAGNNNNNNTAC 2 cut(s) 484, 516
BbsI GAAGAC 2 cut(s) 492, 1386
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 3 cut(s) 978, 1072, 1351
BccI CCATC 7 cut(s) 63, 119, 125, 375, 883, 1207, 1370
BceAI ACGGC 5 cut(s) 294, 463, 468, 541, 670
BcnI CCSGG 2 cut(s) 528, 536
BcoDI GTCTC 3 cut(s) 261, 322, 564
BfaI CTAG 3 cut(s) 71, 293, 1026
BfoI RGCGCY 1 cut(s) 1058
Bme1390I CCNGG 2 cut(s) 528, 536
BmeRI GACNNNNNGTC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 1332
BmiI GGNNCC 4 cut(s) 412, 533, 1056, 1149
BmrFI CCNGG 2 cut(s) 528, 536
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 3 cut(s) 21, 577, 791
BmuI ACTGGG 1 cut(s) 1060
BpiI GAAGAC 2 cut(s) 492, 1386
Bpu14I TTCGAA 1 cut(s) 1005
BpuEI CTTGAG 2 cut(s) 33, 1156
BpuMI CCSGG 2 cut(s) 528, 536
BsaHI GRCGYC 2 cut(s) 554, 1055
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 527, 837, 900
BsaWI WCCGGW 2 cut(s) 407, 782
BsaXI ACNNNNNCTCC 4 cut(s) 1169, 1199, 1321, 1351
Bsc4I CCNNNNNNNGG 5 cut(s) 438, 526, 889, 953, 1157
Bse118I RCCGGY 2 cut(s) 949, 1334
Bse1I ACTGG 2 cut(s) 1055, 1077
Bse3DI GCAATG 1 cut(s) 1105
BseAI TCCGGA 2 cut(s) 407, 782
BseDI CCNNGG 3 cut(s) 527, 837, 900
BseGI GGATG 4 cut(s) 174, 386, 1303, 1381
BseLI CCNNNNNNNGG 5 cut(s) 438, 526, 889, 953, 1157
BseMI GCAATG 1 cut(s) 1105
BseMII CTCAG 2 cut(s) 569, 875
BseNI ACTGG 2 cut(s) 1055, 1077
BseRI GAGGAG 7 cut(s) 527, 1223, 1280, 1288, 1339, 1342, 1374
BseSI GKGCMC 1 cut(s) 1047
BseX3I CGGCCG 1 cut(s) 792
BseXI GCAGC 3 cut(s) 978, 1072, 1351
BseYI CCCAGC 1 cut(s) 1367
Bsh1236I CGCG 1 cut(s) 1090
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 7 cut(s) 54, 216, 794, 899, 946, 1165, 1334
BshNI GGYRCC 2 cut(s) 1054, 1147
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 1047
BsiSI CCGG 8 cut(s) 408, 527, 536, 771, 783, 950, 995, 1335
BslI CCNNNNNNNGG 5 cut(s) 438, 526, 889, 953, 1157
BsmAI GTCTC 3 cut(s) 261, 322, 564
BsmBI CGTCTC 1 cut(s) 564
BsnI GGCC 7 cut(s) 54, 216, 794, 899, 946, 1165, 1334
Bso31I GGTCTC 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 1005
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp13I TCCGGA 2 cut(s) 407, 782
Bsp143I GATC 3 cut(s) 60, 870, 1152
BspANI GGCC 7 cut(s) 54, 216, 794, 899, 946, 1165, 1334
BspCNI CTCAG 2 cut(s) 570, 874
BspEI TCCGGA 2 cut(s) 407, 782
BspFNI CGCG 1 cut(s) 1090
BspLI GGNNCC 4 cut(s) 412, 533, 1056, 1149
BspPI GGATC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 1005
BspT107I GGYRCC 2 cut(s) 1054, 1147
BspTNI GGTCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 1105
BsrFI RCCGGY 2 cut(s) 949, 1334
BsrI ACTGG 2 cut(s) 1055, 1077
BssAI RCCGGY 2 cut(s) 949, 1334
BssECI CCNNGG 3 cut(s) 527, 837, 900
BssMI GATC 3 cut(s) 60, 870, 1152
BssNI GRCGYC 2 cut(s) 554, 1055
BssT1I CCWWGG 1 cut(s) 900
Bst4CI ACNGT 5 cut(s) 415, 496, 543, 593, 670
Bst6I CTCTTC 1 cut(s) 1241
BstACI GRCGYC 2 cut(s) 554, 1055
BstAPI GCANNNNNTGC 2 cut(s) 703, 1036
BstBI TTCGAA 1 cut(s) 1005
BstC8I GCNNGC 5 cut(s) 344, 825, 1092, 1170, 1182
BstDEI CTNAG 2 cut(s) 578, 861
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 4 cut(s) 174, 386, 1303, 1381
BstFNI CGCG 1 cut(s) 1090
BstH2I RGCGCY 1 cut(s) 1058
BstHHI GCGC 2 cut(s) 1057, 1078
BstKTI GATC 3 cut(s) 63, 873, 1155
BstMAI GTCTC 3 cut(s) 261, 322, 564
BstMBI GATC 3 cut(s) 60, 870, 1152
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 6 cut(s) 631, 703, 820, 997, 1036, 1181
BstSCI CCNGG 2 cut(s) 526, 534
BstSLI GKGCMC 1 cut(s) 1047
BstUI CGCG 1 cut(s) 1090
BstV1I GCAGC 3 cut(s) 978, 1072, 1351
BstV2I GAAGAC 2 cut(s) 492, 1386
BstXI CCANNNNNNTGG 2 cut(s) 212, 1201
BstZI CGGCCG 1 cut(s) 792
BsuRI GGCC 7 cut(s) 54, 216, 794, 899, 946, 1165, 1334
BtgI CCRYGG 1 cut(s) 837
BtgZI GCGATG 2 cut(s) 103, 406
BtsCI GGATG 4 cut(s) 174, 386, 1303, 1381
BtsI GCAGTG 1 cut(s) 873
BtsIMutI CAGTG 1 cut(s) 873
Cac8I GCNNGC 5 cut(s) 344, 825, 1092, 1170, 1182
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 2 cut(s) 1057, 1078
Cfr10I RCCGGY 2 cut(s) 949, 1334
Cfr13I GGNCC 1 cut(s) 1332
CseI GACGC 2 cut(s) 562, 1096
Csp6I GTAC 3 cut(s) 460, 492, 594
CviQI GTAC 3 cut(s) 460, 492, 594
DdeI CTNAG 2 cut(s) 578, 861
DinI GGCGCC 1 cut(s) 1056
DpnI GATC 3 cut(s) 62, 872, 1154
DpnII GATC 3 cut(s) 60, 870, 1152
DraIII CACNNNGTG 1 cut(s) 28
DriI GACNNNNNGTC 1 cut(s) 309
EaeI YGGCCR 3 cut(s) 792, 897, 1163
EagI CGGCCG 1 cut(s) 792
Eam1104I CTCTTC 1 cut(s) 1241
Eam1105I GACNNNNNGTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 1241
EciI GGCGGA 2 cut(s) 1190, 1277
EclXI CGGCCG 1 cut(s) 792
Eco130I CCWWGG 1 cut(s) 900
Eco31I GGTCTC 1 cut(s) 322
Eco52I CGGCCG 1 cut(s) 792
Eco57I CTGAAG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 900
EcoT22I ATGCAT 1 cut(s) 806
EgeI GGCGCC 1 cut(s) 1056
EheI GGCGCC 1 cut(s) 1056
ErhI CCWWGG 1 cut(s) 900
Esp3I CGTCTC 1 cut(s) 564
FaiI YATR 9 cut(s) 26, 213, 661, 846, 941, 1070, 1080, 1188, 1346
FauI CCCGC 2 cut(s) 357, 1103
FokI GGATG 4 cut(s) 161, 393, 1310, 1388
FspBI CTAG 3 cut(s) 71, 293, 1026
GlaI GCGC 2 cut(s) 1056, 1077
GsaI CCCAGC 1 cut(s) 1371
HaeII RGCGCY 1 cut(s) 1058
HaeIII GGCC 7 cut(s) 54, 216, 794, 899, 946, 1165, 1334
HapII CCGG 8 cut(s) 408, 527, 536, 771, 783, 950, 995, 1335
HgaI GACGC 2 cut(s) 562, 1096
HhaI GCGC 2 cut(s) 1057, 1078
Hin1I GRCGYC 2 cut(s) 554, 1055
Hin6I GCGC 2 cut(s) 1055, 1076
HinP1I GCGC 2 cut(s) 1055, 1076
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 4 cut(s) 304, 818, 833, 1102
HpaII CCGG 8 cut(s) 408, 527, 536, 771, 783, 950, 995, 1335
HphI GGTGA 8 cut(s) 100, 106, 319, 1282, 1291, 1328, 1349, 1391
Hpy166II GTNNAC 2 cut(s) 418, 1045
Hpy188III TCNNGA 4 cut(s) 408, 637, 783, 959
Hpy8I GTNNAC 2 cut(s) 418, 1045
Hpy99I CGWCG 2 cut(s) 512, 593
HpyAV CCTTC 7 cut(s) 158, 205, 332, 533, 961, 1304, 1439
HpyCH4III ACNGT 5 cut(s) 415, 496, 543, 593, 670
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 6 cut(s) 568, 663, 697, 804, 1045, 1459
HpyF10VI GCNNNNNNNGC 6 cut(s) 631, 703, 820, 997, 1036, 1181
HpyF3I CTNAG 2 cut(s) 578, 861
HpySE526I ACGT 1 cut(s) 714
Hsp92I GRCGYC 2 cut(s) 554, 1055
HspAI GCGC 2 cut(s) 1055, 1076
KasI GGCGCC 1 cut(s) 1054
Kpn2I TCCGGA 2 cut(s) 407, 782
Kzo9I GATC 3 cut(s) 60, 870, 1152
LmnI GCTCC 5 cut(s) 410, 997, 1177, 1228, 1361
Lsp1109I GCAGC 3 cut(s) 978, 1072, 1351
LweI GCATC 3 cut(s) 21, 577, 791
MaeI CTAG 3 cut(s) 71, 293, 1026
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 1 cut(s) 956
MalI GATC 3 cut(s) 62, 872, 1154
MboI GATC 3 cut(s) 60, 870, 1152
MboII GAAGA 7 cut(s) 265, 492, 686, 1019, 1258, 1363, 1386
MhlI GDGCHC 1 cut(s) 1047
MlsI TGGCCA 1 cut(s) 899
MluCI AATT 3 cut(s) 786, 893, 1189
MluI ACGCGT 1 cut(s) 1088
MluNI TGGCCA 1 cut(s) 899
Mly113I GGCGCC 1 cut(s) 1055
MlyI GAGTC 3 cut(s) 298, 812, 1111
MmeI TCCRAC 2 cut(s) 390, 1003
Mox20I TGGCCA 1 cut(s) 899
Mph1103I ATGCAT 1 cut(s) 806
MroI TCCGGA 2 cut(s) 407, 782
MscI TGGCCA 1 cut(s) 899
MseI TTAA 3 cut(s) 359, 1401, 1451
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 899
MspA1I CMGCKG 2 cut(s) 1063, 1168
MspI CCGG 8 cut(s) 408, 527, 536, 771, 783, 950, 995, 1335
MspR9I CCNGG 2 cut(s) 528, 536
MvnI CGCG 1 cut(s) 1090
MwoI GCNNNNNNNGC 6 cut(s) 631, 703, 820, 997, 1036, 1181
NarI GGCGCC 1 cut(s) 1055
NciI CCSGG 2 cut(s) 528, 536
NdeII GATC 3 cut(s) 60, 870, 1152
NlaIV GGNNCC 4 cut(s) 412, 533, 1056, 1149
NmeAIII GCCGAG 1 cut(s) 820
NmuCI GTSAC 1 cut(s) 956
NsiI ATGCAT 1 cut(s) 806
NspV TTCGAA 1 cut(s) 1005
PcsI WCGNNNNNNNCGW 1 cut(s) 1241
PfeI GAWTC 1 cut(s) 833
PflFI GACNNNGTC 1 cut(s) 556
PflMI CCANNNNNTGG 1 cut(s) 889
PfoI TCCNGGA 1 cut(s) 534
PleI GAGTC 3 cut(s) 298, 812, 1110
PluTI GGCGCC 1 cut(s) 1058
PpsI GAGTC 3 cut(s) 298, 812, 1110
PspFI CCCAGC 1 cut(s) 1367
PspN4I GGNNCC 4 cut(s) 412, 533, 1056, 1149
PspPI GGNCC 1 cut(s) 1332
PstNI CAGNNNCTG 1 cut(s) 577
PsyI GACNNNGTC 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 1063
RsaI GTAC 3 cut(s) 461, 493, 595
RsaNI GTAC 3 cut(s) 460, 492, 594
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 359, 1401, 1451
Sau3AI GATC 3 cut(s) 60, 870, 1152
Sau96I GGNCC 1 cut(s) 1332
SchI GAGTC 3 cut(s) 298, 812, 1111
ScrFI CCNGG 2 cut(s) 528, 536
SduI GDGCHC 1 cut(s) 1047
SfaNI GCATC 3 cut(s) 21, 577, 791
SfoI GGCGCC 1 cut(s) 1056
SfuI TTCGAA 1 cut(s) 1005
SgrAI CRCCGGYG 1 cut(s) 949
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 2 cut(s) 48, 1135
SmoI CTYRAG 2 cut(s) 48, 1135
Sse9I AATT 3 cut(s) 786, 893, 1189
SspDI GGCGCC 1 cut(s) 1054
SspI AATATT 1 cut(s) 751
SspMI CTAG 3 cut(s) 71, 293, 1026
StyD4I CCNGG 2 cut(s) 526, 534
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 5 cut(s) 415, 496, 543, 593, 670
TaiI ACGT 1 cut(s) 717
TaqI TCGA 5 cut(s) 186, 608, 638, 681, 1005
TasI AATT 3 cut(s) 786, 893, 1189
TauI GCSGC 7 cut(s) 458, 587, 625, 949, 1060, 1168, 1175
TfiI GAWTC 1 cut(s) 833
Tru1I TTAA 3 cut(s) 359, 1401, 1451
Tru9I TTAA 3 cut(s) 359, 1401, 1451
TscAI CASTG 1 cut(s) 880
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 3 cut(s) 991, 1060, 1364
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 4 cut(s) 270, 656, 1031, 1035
TspGWI ACGGA 2 cut(s) 826, 1387
TspRI CASTG 1 cut(s) 880
Tth111I GACNNNGTC 1 cut(s) 556
Van91I CCANNNNNTGG 1 cut(s) 889
VneI GTGCAC 1 cut(s) 1043
XapI RAATTY 1 cut(s) 786
XcmI CCANNNNNNNNNTGG 1 cut(s) 1201
XspI CTAG 3 cut(s) 71, 293, 1026
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.