Rroxscaffold_5G00353510

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
31375714 .. 31377327
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353510.1

Sequence Viewer

Length: 1614 bp
ATGCCAACCCAAACAGAAGACGTCATTGATGAGCATATACTCAGAAACTCTCACAAGCAATCCAAAAGCATATATAGTCAGTCCATTCATATAGTAATCCCAAAACCCATTCAGAGTCAAAAGCAAAAAAATCAAAGAATTTCAGAGATGGGTTTTGATAAGGAACACATAGTGATGCTACCATTCTTGGCTCAAGGCCATCTGATTCCATTCCTAGCCCTAGCCAAGCAAATCCAGCACAGAACAGGGTTCACCATCACCATCGCCACCACCGCCCTCAACGCCCATTACCTTCGGTCTGCTCAACCCAACACCAACATCCACTTGGCCGAGCTTCCCTTCCGCAGCGAAGACTATGGCCTCCCGCCCAACACAGAGAACACAGAGAACATACCTCTCAACGTAGTCGGAAACCTCTTCACTGCATCGCAACATCTCGAAGCTCCGACTCGCCGCCTTGTCTCGGACATCACCAAAAAAGATGGCAAGCCGCCGCTTTGCTTAATCTCTGACGTGTTTTTTGGGTGGGCAGTGAATGTAGCGAAAAGCTTCGGCACCGTCAACGTCGCCTTCACCACCGGTGGGGCTTACGGCACGGCGGCGTACGTATCCATCTGGCAACATCTCCCGCATCGTAGTGTGTCTTCAGAAGACGAGGAGTTCCACCTTCCGGGGTTCCCGGAACGGTGTCGTTTGACACCGTCTCACTTGCATCCGTTTTTGAGAGCCGCCGACGGTACTGATTCTTGGTCGAGATATTTCCAGCTGCAGATCTCGCTCTCGATGAAGTCTTTTGGTTGCATATGCAACACTATTGAGGAAATCGAGCCGTTCGGATTGCAAGTGTTGCGAAATTACCTTAAGGTTCCTGTTTGGTCCGTTTTGGCTTCCAATATTTCCAGCCAAAAATATTCCGGCAAGAAATCCGGAATTTCGGCTGAGAAATGTATTGAGTGGCTCGACTCGCACGCTTCCGATTCGGTGGTGTACATCTCGTTCGGTTCCCAGAACACGATCAGTGCCTCCCAGATGATAGAATTGGCCAAAGGATTGGAAAAGAGCGGGAAGCCTTTTGTCTGGGTCATAAGGCCGCCGGTGGGTCACGACTTGAAGGGCGAGTTCCGACCGGAGTGGCTGCCGGAGCGTTTCGAGGAGCGAATGAGGGAGACGAAGCAGGGGTTATTGGTGCACAACTGGGCCTCGCAGCTGGAGATTCTGTCGCACGCGGCGACGCGAGCGTTTGTGAGTCACTGCGGGTGGAACTCGGTGTTGGAGAGCTTGAGCAGAGGGGTGCCGATCATCGGGTGGCCGCTGGCGGCGGAGCAGGCGTATAACTCGAAGATGTTGGTGGAGGAGATGGGTGTGAGTGTGGAGCTGACGAGGGGTGTGAAGAGTAATGTGGAAGCGGAGGAGGTGAGGAGAGTGATTGAGTTGGTGGCGGACGAGAGTGGGGAAGGTGGTGAGATGAGGAGAAGAGCTGGTGAGATTATGGAGAAGATAAGAGGAGCTGTAGGGGAGGATGGTGAAGCAAAGGGGTCTTCCCTTAAAGCTATAGATGATTTTGTTTCTGAACTTCTTTCACAGAGAGAAGGAAGAGGATCAAAAATCCAGTAA
Functional Annotation

Protein Analysis

537

Amino Acids

59.88

Weight (kDa)

6.46

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 57 - 184 2.1e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 316 - 460 2.7e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB1I GGYRCC 2 cut(s) 554, 1291
AccBSI CCGCTC 1 cut(s) 1062
AccII CGCG 2 cut(s) 1226, 1234
AccIII TCCGGA 1 cut(s) 926
AclWI GGATC 1 cut(s) 1606
AcoI YGGCCR 3 cut(s) 327, 1041, 1307
AcsI RAATTY 2 cut(s) 138, 930
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 1 cut(s) 21
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 3 cut(s) 605, 739, 989
AfiI CCNNNNNNNGG 5 cut(s) 463, 582, 670, 1097, 1301
AflII CTTAAG 1 cut(s) 860
AflIII ACRYGT 1 cut(s) 513
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 1 cut(s) 1111
AjiI CACGTC 1 cut(s) 514
AjuI GAANNNNNNNTTGG 2 cut(s) 1253, 1285
Alw21I GWGCWC 1 cut(s) 1191
Alw26I GTCTC 3 cut(s) 466, 708, 1160
Alw44I GTGCAC 1 cut(s) 1187
AlwI GGATC 1 cut(s) 1606
Aor13HI TCCGGA 1 cut(s) 926
AoxI GGCC 7 cut(s) 196, 327, 358, 1041, 1088, 1197, 1307
ApaLI GTGCAC 1 cut(s) 1187
ApeKI GCWGC 4 cut(s) 345, 766, 1135, 1204
ApoI RAATTY 2 cut(s) 138, 930
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AsiGI ACCGGT 1 cut(s) 578
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 876, 1197
AsuC2I CCSGG 2 cut(s) 672, 680
AsuHPI GGTGA 8 cut(s) 244, 250, 463, 565, 1426, 1472, 1493, 1535
AvaII GGWCC 1 cut(s) 876
BaeGI GKGCMC 1 cut(s) 1191
BalI TGGCCA 1 cut(s) 1043
BanI GGYRCC 2 cut(s) 554, 1291
BarI GAAGNNNNNNTAC 2 cut(s) 628, 660
BbsI GAAGAC 5 cut(s) 24, 357, 636, 657, 1530
Bbv12I GWGCWC 1 cut(s) 1191
BbvI GCAGC 4 cut(s) 357, 753, 1122, 1216
BccI CCATC 8 cut(s) 142, 207, 263, 269, 476, 620, 1351, 1514
BceAI ACGGC 3 cut(s) 607, 612, 814
BciVI GTATCC 1 cut(s) 619
BcnI CCSGG 2 cut(s) 672, 680
BcoDI GTCTC 3 cut(s) 466, 708, 1160
BfaI CTAG 2 cut(s) 215, 221
BfmI CTRYAG 3 cut(s) 767, 1509, 1551
BfrI CTTAAG 1 cut(s) 860
BfuI GTATCC 1 cut(s) 619
BglII AGATCT 1 cut(s) 771
Bme1390I CCNGG 2 cut(s) 672, 680
Bme18I GGWCC 1 cut(s) 876
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 2 cut(s) 876, 1197
BmiI GGNNCC 5 cut(s) 556, 677, 867, 1003, 1293
BmrFI CCNGG 2 cut(s) 672, 680
BmrI ACTGGG 1 cut(s) 1204
BmsI GCATC 4 cut(s) 165, 434, 640, 721
BmuI ACTGGG 1 cut(s) 1204
BpiI GAAGAC 5 cut(s) 24, 357, 636, 657, 1530
BpmI CTGGAG 1 cut(s) 1229
BpuEI CTTGAG 2 cut(s) 177, 1300
BpuMI CCSGG 2 cut(s) 672, 680
BsaAI YACGTR 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 671
BsaWI WCCGGW 3 cut(s) 578, 926, 1126
BsaXI ACNNNNNCTCC 4 cut(s) 1202, 1232, 1313, 1343
Bsc4I CCNNNNNNNGG 5 cut(s) 463, 582, 670, 1097, 1301
Bse118I RCCGGY 2 cut(s) 578, 1093
Bse1I ACTGG 2 cut(s) 1199, 1609
BseAI TCCGGA 1 cut(s) 926
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 3 cut(s) 318, 712, 1525
BseLI CCNNNNNNNGG 5 cut(s) 463, 582, 670, 1097, 1301
BseMII CTCAG 2 cut(s) 55, 930
BseNI ACTGG 2 cut(s) 1199, 1609
BseRI GAGGAG 7 cut(s) 671, 1166, 1367, 1424, 1432, 1483, 1518
BseSI GKGCMC 1 cut(s) 1191
BseXI GCAGC 4 cut(s) 357, 753, 1122, 1216
Bsh1236I CGCG 2 cut(s) 1226, 1234
Bsh1285I CGRYCG 1 cut(s) 1127
BshFI GGCC 7 cut(s) 198, 329, 360, 1043, 1090, 1199, 1309
BshNI GGYRCC 2 cut(s) 554, 1291
BshTI ACCGGT 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 1127
BsiHKAI GWGCWC 1 cut(s) 1191
BsiSI CCGG 8 cut(s) 579, 671, 680, 915, 927, 1094, 1127, 1139
BsiWI CGTACG 1 cut(s) 603
BslI CCNNNNNNNGG 5 cut(s) 463, 582, 670, 1097, 1301
BsmAI GTCTC 3 cut(s) 466, 708, 1160
BsmBI CGTCTC 2 cut(s) 708, 1160
BsnI GGCC 7 cut(s) 198, 329, 360, 1043, 1090, 1199, 1309
Bsp1286I GDGCHC 1 cut(s) 1191
Bsp13I TCCGGA 1 cut(s) 926
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 4 cut(s) 771, 1014, 1296, 1598
BspANI GGCC 7 cut(s) 198, 329, 360, 1043, 1090, 1199, 1309
BspCNI CTCAG 2 cut(s) 54, 931
BspEI TCCGGA 1 cut(s) 926
BspFNI CGCG 2 cut(s) 1226, 1234
BspLI GGNNCC 5 cut(s) 556, 677, 867, 1003, 1293
BspMAI CTGCAG 1 cut(s) 771
BspPI GGATC 1 cut(s) 1606
BspQI GCTCTTC 1 cut(s) 1468
BspT107I GGYRCC 2 cut(s) 554, 1291
BspTI CTTAAG 1 cut(s) 860
BsrBI CCGCTC 1 cut(s) 1062
BsrFI RCCGGY 2 cut(s) 578, 1093
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 2 cut(s) 1199, 1609
BssAI RCCGGY 2 cut(s) 578, 1093
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 4 cut(s) 771, 1014, 1296, 1598
BssNI GRCGYC 1 cut(s) 21
Bst4CI ACNGT 4 cut(s) 559, 687, 702, 737
Bst6I CTCTTC 4 cut(s) 422, 1385, 1468, 1588
BstACI GRCGYC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 860
BstAPI GCANNNNNTGC 1 cut(s) 847
BstAUI TGTACA 1 cut(s) 987
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 6 cut(s) 488, 969, 1224, 1236, 1314, 1326
BstDEI CTNAG 2 cut(s) 41, 939
BstF5I GGATG 3 cut(s) 318, 712, 1525
BstFNI CGCG 2 cut(s) 1226, 1234
BstKTI GATC 4 cut(s) 774, 1017, 1299, 1601
BstMAI GTCTC 3 cut(s) 466, 708, 1160
BstMBI GATC 4 cut(s) 771, 1014, 1296, 1598
BstMCI CGRYCG 1 cut(s) 1127
BstMWI GCNNNNNNNGC 9 cut(s) 235, 272, 281, 775, 847, 964, 1141, 1235, 1325
BstSCI CCNGG 2 cut(s) 670, 678
BstSFI CTRYAG 3 cut(s) 767, 1509, 1551
BstSLI GKGCMC 1 cut(s) 1191
BstSNI TACGTA 1 cut(s) 607
BstUI CGCG 2 cut(s) 1226, 1234
BstV1I GCAGC 4 cut(s) 357, 753, 1122, 1216
BstV2I GAAGAC 5 cut(s) 24, 357, 636, 657, 1530
BstX2I RGATCY 1 cut(s) 771
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 1 cut(s) 771
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 7 cut(s) 198, 329, 360, 1043, 1090, 1199, 1309
BtgZI GCGATG 2 cut(s) 247, 411
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 3 cut(s) 318, 712, 1525
BtsI GCAGTG 3 cut(s) 420, 537, 1249
BtsIMutI CAGTG 4 cut(s) 420, 537, 1024, 1249
Cac8I GCNNGC 6 cut(s) 488, 969, 1224, 1236, 1314, 1326
Cfr10I RCCGGY 2 cut(s) 578, 1093
Cfr13I GGNCC 2 cut(s) 876, 1197
CseI GACGC 1 cut(s) 1240
Csp6I GTAC 3 cut(s) 604, 738, 988
CspAI ACCGGT 1 cut(s) 578
CviQI GTAC 3 cut(s) 604, 738, 988
DdeI CTNAG 2 cut(s) 41, 939
DpnI GATC 4 cut(s) 773, 1016, 1298, 1600
DpnII GATC 4 cut(s) 771, 1014, 1296, 1598
DraIII CACNNNGTG 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 327, 1041, 1307
Eam1104I CTCTTC 4 cut(s) 422, 1385, 1468, 1588
EarI CTCTTC 4 cut(s) 422, 1385, 1468, 1588
EciI GGCGGA 2 cut(s) 1334, 1454
Eco105I TACGTA 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 876
Eco57I CTGAAG 1 cut(s) 630
Esp3I CGTCTC 2 cut(s) 708, 1160
FauI CCCGC 4 cut(s) 372, 636, 1055, 1247
FauNDI CATATG 1 cut(s) 803
FokI GGATG 3 cut(s) 305, 699, 1532
FspBI CTAG 2 cut(s) 215, 221
GsuI CTGGAG 1 cut(s) 1229
HaeIII GGCC 7 cut(s) 198, 329, 360, 1043, 1090, 1199, 1309
HapII CCGG 8 cut(s) 579, 671, 680, 915, 927, 1094, 1127, 1139
HgaI GACGC 1 cut(s) 1240
Hin1I GRCGYC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 8 cut(s) 115, 205, 448, 743, 962, 977, 1213, 1246
HpaII CCGG 8 cut(s) 579, 671, 680, 915, 927, 1094, 1127, 1139
HphI GGTGA 8 cut(s) 244, 250, 463, 565, 1426, 1472, 1493, 1535
Hpy166II GTNNAC 4 cut(s) 252, 562, 988, 1189
Hpy188III TCNNGA 5 cut(s) 437, 753, 781, 927, 1103
Hpy8I GTNNAC 4 cut(s) 252, 562, 988, 1189
Hpy99I CGWCG 3 cut(s) 569, 737, 1234
HpyAV CCTTC 7 cut(s) 302, 349, 580, 677, 1105, 1448, 1583
HpyCH4III ACNGT 4 cut(s) 559, 687, 702, 737
HpyCH4IV ACGT 5 cut(s) 21, 402, 513, 564, 606
HpyCH4V TGCA 7 cut(s) 425, 712, 769, 801, 807, 841, 1189
HpyF10VI GCNNNNNNNGC 9 cut(s) 235, 272, 281, 775, 847, 964, 1141, 1235, 1325
HpyF3I CTNAG 2 cut(s) 41, 939
HpySE526I ACGT 5 cut(s) 21, 402, 513, 564, 606
Hsp92I GRCGYC 1 cut(s) 21
Kpn2I TCCGGA 1 cut(s) 926
Kzo9I GATC 4 cut(s) 771, 1014, 1296, 1598
LguI GCTCTTC 1 cut(s) 1468
LmnI GCTCC 6 cut(s) 448, 1141, 1153, 1321, 1372, 1505
Lsp1109I GCAGC 4 cut(s) 357, 753, 1122, 1216
LweI GCATC 4 cut(s) 165, 434, 640, 721
MaeI CTAG 2 cut(s) 215, 221
MaeII ACGT 5 cut(s) 21, 402, 513, 564, 606
MaeIII GTNAC 2 cut(s) 1100, 1247
MalI GATC 4 cut(s) 773, 1016, 1298, 1600
MbiI CCGCTC 1 cut(s) 1062
MboI GATC 4 cut(s) 771, 1014, 1296, 1598
MflI RGATCY 1 cut(s) 771
MhlI GDGCHC 1 cut(s) 1191
MlsI TGGCCA 1 cut(s) 1043
MluCI AATT 4 cut(s) 138, 853, 930, 1037
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 4 cut(s) 124, 442, 956, 1255
MmeI TCCRAC 4 cut(s) 388, 470, 1147, 1251
Mox20I TGGCCA 1 cut(s) 1043
MroI TCCGGA 1 cut(s) 926
MroXI GAANNNNTTC 1 cut(s) 548
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 3 cut(s) 503, 861, 1545
MslI CAYNNNNRTG 2 cut(s) 173, 636
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 3 cut(s) 766, 1207, 1312
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 8 cut(s) 579, 671, 680, 915, 927, 1094, 1127, 1139
MspR9I CCNGG 2 cut(s) 672, 680
MvnI CGCG 2 cut(s) 1226, 1234
MwoI GCNNNNNNNGC 9 cut(s) 235, 272, 281, 775, 847, 964, 1141, 1235, 1325
NciI CCSGG 2 cut(s) 672, 680
NdeI CATATG 1 cut(s) 803
NdeII GATC 4 cut(s) 771, 1014, 1296, 1598
NlaIV GGNNCC 5 cut(s) 556, 677, 867, 1003, 1293
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 1100, 1247
PciSI GCTCTTC 1 cut(s) 1468
PcsI WCGNNNNNNNCGW 1 cut(s) 1226
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 4 cut(s) 205, 743, 977, 1213
Pfl23II CGTACG 1 cut(s) 603
PflFI GACNNNGTC 1 cut(s) 700
PfoI TCCNGGA 1 cut(s) 678
PinAI ACCGGT 1 cut(s) 578
PleI GAGTC 4 cut(s) 123, 442, 956, 1254
PpsI GAGTC 4 cut(s) 123, 442, 956, 1254
Ppu21I YACGTR 1 cut(s) 607
PspLI CGTACG 1 cut(s) 603
PspN4I GGNNCC 5 cut(s) 556, 677, 867, 1003, 1293
PspPI GGNCC 2 cut(s) 876, 1197
PsrI GAACNNNNNNTAC 2 cut(s) 980, 1012
PstI CTGCAG 1 cut(s) 771
PsuI RGATCY 1 cut(s) 771
PsyI GACNNNGTC 1 cut(s) 700
PvuII CAGCTG 2 cut(s) 766, 1207
RsaI GTAC 3 cut(s) 605, 739, 989
RsaNI GTAC 3 cut(s) 604, 738, 988
RseI CAYNNNNRTG 2 cut(s) 173, 636
SapI GCTCTTC 1 cut(s) 1468
SaqAI TTAA 3 cut(s) 503, 861, 1545
Sau3AI GATC 4 cut(s) 771, 1014, 1296, 1598
Sau96I GGNCC 2 cut(s) 876, 1197
SchI GAGTC 4 cut(s) 124, 442, 956, 1255
ScrFI CCNGG 2 cut(s) 672, 680
SduI GDGCHC 1 cut(s) 1191
SfaNI GCATC 4 cut(s) 165, 434, 640, 721
SfcI CTRYAG 3 cut(s) 767, 1509, 1551
SgrAI CRCCGGYG 2 cut(s) 578, 1093
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 2 cut(s) 173, 636
SmlI CTYRAG 3 cut(s) 192, 860, 1279
SmoI CTYRAG 3 cut(s) 192, 860, 1279
SnaBI TACGTA 1 cut(s) 607
Sse9I AATT 4 cut(s) 138, 853, 930, 1037
SspI AATATT 2 cut(s) 895, 911
SspMI CTAG 2 cut(s) 215, 221
StyD4I CCNGG 2 cut(s) 670, 678
TaaI ACNGT 4 cut(s) 559, 687, 702, 737
TaiI ACGT 5 cut(s) 24, 405, 516, 567, 609
TaqI TCGA 7 cut(s) 438, 752, 782, 825, 960, 1149, 1337
TaqII GACCGA 1 cut(s) 285
TasI AATT 4 cut(s) 138, 853, 930, 1037
TatI WGTACW 1 cut(s) 987
TauI GCSGC 9 cut(s) 456, 493, 496, 602, 731, 1093, 1229, 1312, 1319
TfiI GAWTC 4 cut(s) 205, 743, 977, 1213
Tru1I TTAA 3 cut(s) 503, 861, 1545
Tru9I TTAA 3 cut(s) 503, 861, 1545
TscAI CASTG 4 cut(s) 427, 537, 1024, 1256
TseFI GTSAC 2 cut(s) 1100, 1247
TseI GCWGC 4 cut(s) 345, 766, 1135, 1204
Tsp45I GTSAC 2 cut(s) 1100, 1247
TspDTI ATGAA 2 cut(s) 77, 800
TspGWI ACGGA 2 cut(s) 705, 868
TspRI CASTG 4 cut(s) 427, 537, 1024, 1256
Tth111I GACNNNGTC 1 cut(s) 700
Vha464I CTTAAG 1 cut(s) 860
VneI GTGCAC 1 cut(s) 1187
VpaK11BI GGWCC 1 cut(s) 876
XapI RAATTY 2 cut(s) 138, 930
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 2 cut(s) 215, 221
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.