Rh4BG151800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001515
Physical Location & Seq
Forward (+)
27188239 .. 27189705
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG151800.1

Sequence Viewer

Length: 1467 bp
ATGGGTTTTGATAAGGAACACATAGTGATGCTACCATTCTTGGCTCAAGGCCATCTGATTCCATTCCTAGCCCTAGCCAAGCAAATCCAGCGCAGAACAGGGTTCACCATCACCATCGCCACCACCGCCCTCAACGCCCATTACCTTCGGTCTGCTCAACCCAACACCAACATCCACTTGGCCGAGCTTCCCTTCCGCAGCGAAAACTATGGCCTCCCGCCCAACACAGAGAACACAGAGAACATACCTCTCAACGTAGTCGGAAACCTCTTCACTGCATCGCAACATCTCGAAGCTCCGACTCGCCGCCTAGTCTCGGACATCACCGAAAAAGAAGGCAAGCCGCCGCTTTGCTTAATCTCCGACGTGTTTTTTGGGTGGGCTGTGAATGTAGCGAAAAGCTTCGGCACCGTCAACGTCGCTTTCACCACCGGTGGGGCTTACGGCACGGCGGCGTACGTGTCCATCTGGCAACATCTCCCGCATCGTAGTGTGTCTTCAGAAGACGAGGAGTTCCACCTTCCGGGCTTCCCGGAACGGTGTCGTTTGACACCGTCTCACTTGCATCCGTTTTTGAGAGCCGCCGACGGTACTGATTCTTGGTCGAGATATTTCCAGCCACAGATCTCGCTCTCGATGAAGTCTTTTGGTTGCATATGCAACACCATTGAGGAAATCGAGCCGTTCGGATTGGAAGTGTTGCGAAATTACCTTAAGGTTCCTGTTTGGTCCGTCTTGGCTTCCAATATTTCCAGCCAAAAATATTCCGGCAAGAAATCCGGAATTTCGGCTGAGAAATGTATTGAGTGGCTCGACTCGCACGCTTCCGATTCGGTGGTGTATATCTCGTTCGGTTCTCAGAACACGATTAGTGCCTCCCAGATGATAGAATTGGCCAAAGGATTGGAAAAGAGCGGGAAGCCTTTTGTCTGGGTCTTAAGGCCGCCGGTGGGTCACGACTTGAAGGGCGAGTTCCGACCAGAGTGGCTGCCTGAGCGTTTCGAGGAGCGAATGAGGGAGACGAAGCAGGGATTATTGGTGCACAACTGGGCCTCGCAGCTGGAGATTCTGTCGCACGCGGCGACGCGAGCGTTTGTGAGTCACTGCGGGTGGAACTCGGTGGTGGAGAGCTTGAGCAGAGGGGTGCCGATCATTGGGTGGCCGCTGGCGGCGGAGCAGGCGTATAACTCGAAGATGTTGGTGGAGGAGATGGGTGTGAGTGTGGAGCTGACGAGGGGTGTGAAGAGTAATGTGGAGGCGGAGGAGGTGAGGCGAGTGATTGAGTTGGTGGTGGACGAGAGTGGGGAAGGTGGTGAGATGAGGAGAAGAGCTGGTGAGATTATGGAGAAGATAAGAGGAGCTGTAGGGGAGGATGGTGAAGCAAAGGGGTCTTCCCTGAAAGCTATAGATGATTTTGTTTCTGAACTTCTTTCACAGAGAGAAGGAAGAGGATCCAAAATTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

488

Amino Acids

54.19

Weight (kDa)

6.05

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 8 - 135 1.6e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 266 - 412 1.7e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 407, 1144
AccBSI CCGCTC 1 cut(s) 915
AccII CGCG 2 cut(s) 1079, 1087
AccIII TCCGGA 1 cut(s) 779
AclWI GGATC 2 cut(s) 1446, 1459
AcoI YGGCCR 3 cut(s) 180, 894, 1160
AcsI RAATTY 2 cut(s) 783, 1458
AcuI CTGAAG 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 2 cut(s) 458, 592
AfiI CCNNNNNNNGG 5 cut(s) 316, 435, 523, 950, 1154
AflII CTTAAG 2 cut(s) 713, 937
AflIII ACRYGT 2 cut(s) 366, 459
AgeI ACCGGT 1 cut(s) 431
AgsI TTSAA 1 cut(s) 964
AjiI CACGTC 1 cut(s) 367
AluBI AGCT 9 cut(s) 187, 296, 402, 1060, 1131, 1228, 1331, 1361, 1403
AluI AGCT 9 cut(s) 187, 296, 402, 1060, 1131, 1228, 1331, 1361, 1403
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 3 cut(s) 319, 561, 1013
Alw44I GTGCAC 1 cut(s) 1040
AlwI GGATC 2 cut(s) 1446, 1459
Aor13HI TCCGGA 1 cut(s) 779
AoxI GGCC 7 cut(s) 49, 180, 211, 894, 941, 1050, 1160
ApaLI GTGCAC 1 cut(s) 1040
ApeKI GCWGC 3 cut(s) 198, 988, 1057
ApoI RAATTY 2 cut(s) 783, 1458
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 729, 1050
AsuC2I CCSGG 2 cut(s) 525, 533
AsuHPI GGTGA 8 cut(s) 97, 103, 316, 418, 1279, 1325, 1346, 1388
AvaII GGWCC 1 cut(s) 729
BaeGI GKGCMC 1 cut(s) 1044
BalI TGGCCA 1 cut(s) 896
BamHI GGATCC 1 cut(s) 1451
BanI GGYRCC 2 cut(s) 407, 1144
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BbsI GAAGAC 3 cut(s) 489, 510, 1383
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 3 cut(s) 210, 975, 1069
BccI CCATC 6 cut(s) 60, 116, 122, 473, 1204, 1367
BceAI ACGGC 3 cut(s) 460, 465, 667
BcnI CCSGG 2 cut(s) 525, 533
BcoDI GTCTC 3 cut(s) 319, 561, 1013
BfaI CTAG 3 cut(s) 68, 74, 311
BfmI CTRYAG 2 cut(s) 1362, 1404
BfrI CTTAAG 2 cut(s) 713, 937
BglII AGATCT 1 cut(s) 624
Bme1390I CCNGG 2 cut(s) 525, 533
Bme18I GGWCC 1 cut(s) 729
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 729, 1050
BmiI GGNNCC 4 cut(s) 409, 720, 1146, 1453
BmrFI CCNGG 2 cut(s) 525, 533
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 4 cut(s) 18, 287, 493, 574
BmuI ACTGGG 1 cut(s) 1057
BpiI GAAGAC 3 cut(s) 489, 510, 1383
BpmI CTGGAG 1 cut(s) 1082
Bpu10I CCTNAGC 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 30, 1153
BpuMI CCSGG 2 cut(s) 525, 533
BsaAI YACGTR 1 cut(s) 460
BsaWI WCCGGW 2 cut(s) 431, 779
BsaXI ACNNNNNCTCC 4 cut(s) 1055, 1085, 1166, 1196
Bsc4I CCNNNNNNNGG 5 cut(s) 316, 435, 523, 950, 1154
Bse118I RCCGGY 2 cut(s) 431, 946
Bse1I ACTGG 1 cut(s) 1052
BseAI TCCGGA 1 cut(s) 779
BseGI GGATG 3 cut(s) 171, 565, 1378
BseLI CCNNNNNNNGG 5 cut(s) 316, 435, 523, 950, 1154
BseMII CTCAG 3 cut(s) 783, 872, 984
BseNI ACTGG 1 cut(s) 1052
BseRI GAGGAG 6 cut(s) 524, 1019, 1220, 1277, 1336, 1371
BseSI GKGCMC 1 cut(s) 1044
BseXI GCAGC 3 cut(s) 210, 975, 1069
Bsh1236I CGCG 2 cut(s) 1079, 1087
BshFI GGCC 7 cut(s) 51, 182, 213, 896, 943, 1052, 1162
BshNI GGYRCC 2 cut(s) 407, 1144
BshTI ACCGGT 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 6 cut(s) 432, 524, 533, 768, 780, 947
BsiWI CGTACG 1 cut(s) 456
BslI CCNNNNNNNGG 5 cut(s) 316, 435, 523, 950, 1154
BsmAI GTCTC 3 cut(s) 319, 561, 1013
BsmBI CGTCTC 2 cut(s) 561, 1013
BsnI GGCC 7 cut(s) 51, 182, 213, 896, 943, 1052, 1162
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp13I TCCGGA 1 cut(s) 779
Bsp143I GATC 3 cut(s) 624, 1149, 1451
BspANI GGCC 7 cut(s) 51, 182, 213, 896, 943, 1052, 1162
BspCNI CTCAG 3 cut(s) 784, 871, 985
BspEI TCCGGA 1 cut(s) 779
BspFNI CGCG 2 cut(s) 1079, 1087
BspLI GGNNCC 4 cut(s) 409, 720, 1146, 1453
BspPI GGATC 2 cut(s) 1446, 1459
BspQI GCTCTTC 1 cut(s) 1321
BspT107I GGYRCC 2 cut(s) 407, 1144
BspTI CTTAAG 2 cut(s) 713, 937
BsrBI CCGCTC 1 cut(s) 915
BsrFI RCCGGY 2 cut(s) 431, 946
BsrI ACTGG 1 cut(s) 1052
BssAI RCCGGY 2 cut(s) 431, 946
BssMI GATC 3 cut(s) 624, 1149, 1451
Bst4CI ACNGT 4 cut(s) 412, 540, 555, 590
Bst6I CTCTTC 4 cut(s) 275, 1238, 1321, 1441
BstAFI CTTAAG 2 cut(s) 713, 937
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 6 cut(s) 341, 822, 1077, 1089, 1167, 1179
BstDEI CTNAG 3 cut(s) 792, 858, 993
BstF5I GGATG 3 cut(s) 171, 565, 1378
BstFNI CGCG 2 cut(s) 1079, 1087
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 3 cut(s) 627, 1152, 1454
BstMAI GTCTC 3 cut(s) 319, 561, 1013
BstMBI GATC 3 cut(s) 624, 1149, 1451
BstMWI GCNNNNNNNGC 7 cut(s) 88, 125, 134, 817, 994, 1088, 1178
BstSCI CCNGG 2 cut(s) 523, 531
BstSFI CTRYAG 2 cut(s) 1362, 1404
BstSLI GKGCMC 1 cut(s) 1044
BstUI CGCG 2 cut(s) 1079, 1087
BstV1I GCAGC 3 cut(s) 210, 975, 1069
BstV2I GAAGAC 3 cut(s) 489, 510, 1383
BstX2I RGATCY 2 cut(s) 624, 1451
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 2 cut(s) 624, 1451
BsuRI GGCC 7 cut(s) 51, 182, 213, 896, 943, 1052, 1162
BtgZI GCGATG 2 cut(s) 100, 264
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 3 cut(s) 171, 565, 1378
BtsI GCAGTG 2 cut(s) 273, 1102
BtsIMutI CAGTG 2 cut(s) 273, 1102
Cac8I GCNNGC 6 cut(s) 341, 822, 1077, 1089, 1167, 1179
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 2 cut(s) 431, 946
Cfr13I GGNCC 2 cut(s) 729, 1050
CseI GACGC 1 cut(s) 1093
Csp6I GTAC 2 cut(s) 457, 591
CspAI ACCGGT 1 cut(s) 431
CviQI GTAC 2 cut(s) 457, 591
DdeI CTNAG 3 cut(s) 792, 858, 993
DpnI GATC 3 cut(s) 626, 1151, 1453
DpnII GATC 3 cut(s) 624, 1149, 1451
DraIII CACNNNGTG 1 cut(s) 25
EaeI YGGCCR 3 cut(s) 180, 894, 1160
Eam1104I CTCTTC 4 cut(s) 275, 1238, 1321, 1441
EarI CTCTTC 4 cut(s) 275, 1238, 1321, 1441
EciI GGCGGA 2 cut(s) 1187, 1274
Eco47I GGWCC 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 483
Esp3I CGTCTC 2 cut(s) 561, 1013
FaiI YATR 9 cut(s) 23, 210, 245, 656, 658, 843, 1185, 1343, 1406
FauI CCCGC 4 cut(s) 225, 489, 908, 1100
FauNDI CATATG 1 cut(s) 656
FokI GGATG 3 cut(s) 158, 552, 1385
FspBI CTAG 3 cut(s) 68, 74, 311
GlaI GCGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 1082
HaeIII GGCC 7 cut(s) 51, 182, 213, 896, 943, 1052, 1162
HapII CCGG 6 cut(s) 432, 524, 533, 768, 780, 947
HgaI GACGC 1 cut(s) 1093
HhaI GCGC 1 cut(s) 93
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 7 cut(s) 58, 301, 596, 815, 830, 1066, 1099
HpaII CCGG 6 cut(s) 432, 524, 533, 768, 780, 947
HphI GGTGA 8 cut(s) 97, 103, 316, 418, 1279, 1325, 1346, 1388
Hpy166II GTNNAC 4 cut(s) 105, 415, 1042, 1294
Hpy188III TCNNGA 5 cut(s) 290, 606, 634, 780, 956
Hpy8I GTNNAC 4 cut(s) 105, 415, 1042, 1294
Hpy99I CGWCG 4 cut(s) 368, 422, 590, 1087
HpyAV CCTTC 7 cut(s) 155, 202, 329, 530, 958, 1301, 1436
HpyCH4III ACNGT 4 cut(s) 412, 540, 555, 590
HpyCH4IV ACGT 4 cut(s) 255, 366, 417, 459
HpyCH4V TGCA 5 cut(s) 278, 565, 654, 660, 1042
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 125, 134, 817, 994, 1088, 1178
HpyF3I CTNAG 3 cut(s) 792, 858, 993
HpySE526I ACGT 4 cut(s) 255, 366, 417, 459
HspAI GCGC 1 cut(s) 91
Kpn2I TCCGGA 1 cut(s) 779
Kzo9I GATC 3 cut(s) 624, 1149, 1451
LguI GCTCTTC 1 cut(s) 1321
LmnI GCTCC 5 cut(s) 301, 1006, 1174, 1225, 1358
Lsp1109I GCAGC 3 cut(s) 210, 975, 1069
LweI GCATC 4 cut(s) 18, 287, 493, 574
MaeI CTAG 3 cut(s) 68, 74, 311
MaeII ACGT 4 cut(s) 255, 366, 417, 459
MaeIII GTNAC 2 cut(s) 953, 1100
MalI GATC 3 cut(s) 626, 1151, 1453
MbiI CCGCTC 1 cut(s) 915
MboI GATC 3 cut(s) 624, 1149, 1451
MboII GAAGA 9 cut(s) 262, 489, 515, 1204, 1255, 1338, 1360, 1383, 1458
MflI RGATCY 2 cut(s) 624, 1451
MhlI GDGCHC 1 cut(s) 1044
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 4 cut(s) 706, 783, 890, 1458
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 3 cut(s) 295, 809, 1108
MmeI TCCRAC 4 cut(s) 241, 323, 387, 1000
Mox20I TGGCCA 1 cut(s) 896
MroI TCCGGA 1 cut(s) 779
MroXI GAANNNNTTC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 896
MseI TTAA 3 cut(s) 356, 714, 938
MslI CAYNNNNRTG 2 cut(s) 26, 489
Msp20I TGGCCA 1 cut(s) 896
MspA1I CMGCKG 2 cut(s) 1060, 1165
MspCI CTTAAG 2 cut(s) 713, 937
MspI CCGG 6 cut(s) 432, 524, 533, 768, 780, 947
MspR9I CCNGG 2 cut(s) 525, 533
MvnI CGCG 2 cut(s) 1079, 1087
MwoI GCNNNNNNNGC 7 cut(s) 88, 125, 134, 817, 994, 1088, 1178
NciI CCSGG 2 cut(s) 525, 533
NdeI CATATG 1 cut(s) 656
NdeII GATC 3 cut(s) 624, 1149, 1451
NlaIV GGNNCC 4 cut(s) 409, 720, 1146, 1453
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 953, 1100
PciSI GCTCTTC 1 cut(s) 1321
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 4 cut(s) 58, 596, 830, 1066
Pfl23II CGTACG 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 531
PinAI ACCGGT 1 cut(s) 431
PleI GAGTC 3 cut(s) 295, 809, 1107
PpsI GAGTC 3 cut(s) 295, 809, 1107
Ppu21I YACGTR 1 cut(s) 460
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 4 cut(s) 409, 720, 1146, 1453
PspPI GGNCC 2 cut(s) 729, 1050
PsrI GAACNNNNNNTAC 2 cut(s) 833, 865
PsuI RGATCY 2 cut(s) 624, 1451
PsyI GACNNNGTC 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 1060
RsaI GTAC 2 cut(s) 458, 592
RsaNI GTAC 2 cut(s) 457, 591
RseI CAYNNNNRTG 2 cut(s) 26, 489
SapI GCTCTTC 1 cut(s) 1321
SaqAI TTAA 3 cut(s) 356, 714, 938
Sau3AI GATC 3 cut(s) 624, 1149, 1451
Sau96I GGNCC 2 cut(s) 729, 1050
SchI GAGTC 3 cut(s) 295, 809, 1108
ScrFI CCNGG 2 cut(s) 525, 533
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 4 cut(s) 18, 287, 493, 574
SfcI CTRYAG 2 cut(s) 1362, 1404
SgrAI CRCCGGYG 2 cut(s) 431, 946
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 2 cut(s) 26, 489
SmlI CTYRAG 4 cut(s) 45, 713, 937, 1132
SmoI CTYRAG 4 cut(s) 45, 713, 937, 1132
Sse9I AATT 4 cut(s) 706, 783, 890, 1458
SspI AATATT 2 cut(s) 748, 764
SspMI CTAG 3 cut(s) 68, 74, 311
StyD4I CCNGG 2 cut(s) 523, 531
TaaI ACNGT 4 cut(s) 412, 540, 555, 590
TaiI ACGT 4 cut(s) 258, 369, 420, 462
TaqI TCGA 7 cut(s) 291, 605, 635, 678, 813, 1002, 1190
TaqII GACCGA 1 cut(s) 138
TasI AATT 4 cut(s) 706, 783, 890, 1458
TauI GCSGC 9 cut(s) 309, 346, 349, 455, 584, 946, 1082, 1165, 1172
TfiI GAWTC 4 cut(s) 58, 596, 830, 1066
Tru1I TTAA 3 cut(s) 356, 714, 938
Tru9I TTAA 3 cut(s) 356, 714, 938
TscAI CASTG 2 cut(s) 280, 1109
TseFI GTSAC 2 cut(s) 953, 1100
TseI GCWGC 3 cut(s) 198, 988, 1057
Tsp45I GTSAC 2 cut(s) 953, 1100
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 2 cut(s) 558, 721
TspRI CASTG 2 cut(s) 280, 1109
Tth111I GACNNNGTC 1 cut(s) 553
Vha464I CTTAAG 2 cut(s) 713, 937
VneI GTGCAC 1 cut(s) 1040
VpaK11BI GGWCC 1 cut(s) 729
XapI RAATTY 2 cut(s) 783, 1458
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 3 cut(s) 68, 74, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.